RchiOBHm_Chr7g0214601

Aspartokinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
31953567 .. 31954988
1422 bp
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UTR
Exon/CDS
Intron
PRQ19200

Sequence Viewer

Length: 324 bp
ATGTTTACTTCCATGAGGTGGAGCAGGGCTGATTCTATTATCCTAGAGGTCATGGATCTGATCAAGGGGTGGATATCATGTGCAGTGACCACGCTGGGTAGAGATGGTAGTGATTTGACCGCTACAACCATTGGTAAAGCACGTTGGCAGGAACTTGACCATGTTGTGGAAGAACTGGAGAAAATTGTTGTTGTCAATCTTCAGCACCGATCAATATCTCATTGGAAATGTGCAGAAATCATCACTAATATTAGAGAAGGTGTTGTACTGTGTTTTGCCAAGTACTTAGAAAGCATTCCCTATTTTCTTTTGTTCTCTGGTTGA

Protein Analysis

107

Amino Acids

12.2

Weight (kDa)

5.87

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 18, 166
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 2 cut(s) 267, 284
AfiI CCNNNNNNNGG 2 cut(s) 18, 166
AlwI GGATC 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 294
BarI GAAGNNNNNNTAC 2 cut(s) 249, 281
BccI CCATC 1 cut(s) 98
BclI TGATCA 1 cut(s) 60
BfaI CTAG 1 cut(s) 44
BmcAI AGTACT 1 cut(s) 284
BpmI CTGGAG 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 214
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 166
Bse1I ACTGG 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 214
BseJI GATNNNNATC 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 18, 166
BseNI ACTGG 1 cut(s) 180
BseYI CCCAGC 1 cut(s) 94
BsgI GTGCAG 2 cut(s) 102, 252
BslI CCNNNNNNNGG 2 cut(s) 18, 166
BsmI GAATGC 1 cut(s) 294
Bsp143I GATC 3 cut(s) 55, 60, 209
BspACI CCGC 1 cut(s) 120
BspPI GGATC 1 cut(s) 63
BsrI ACTGG 1 cut(s) 180
BssMI GATC 3 cut(s) 55, 60, 209
Bst4CI ACNGT 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 286
BstKTI GATC 3 cut(s) 58, 63, 212
BstMBI GATC 3 cut(s) 55, 60, 209
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
Csp6I GTAC 2 cut(s) 266, 283
CviAII CATG 4 cut(s) 13, 52, 78, 161
CviJI RGCY 1 cut(s) 29
CviKI_1 RGCY 1 cut(s) 29
CviQI GTAC 2 cut(s) 266, 283
DdeI CTNAG 1 cut(s) 286
DpnI GATC 3 cut(s) 57, 62, 211
DpnII GATC 3 cut(s) 55, 60, 209
Eco32I GATATC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 185
EcoRV GATATC 1 cut(s) 75
FaeI CATG 4 cut(s) 16, 55, 81, 164
FaiI YATR 4 cut(s) 14, 53, 79, 162
FatI CATG 4 cut(s) 12, 51, 77, 160
FbaI TGATCA 1 cut(s) 60
FspBI CTAG 1 cut(s) 44
GsaI CCCAGC 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 197
Hin1II CATG 4 cut(s) 16, 55, 81, 164
HinfI GANTC 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 60
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 83, 233
HpyF3I CTNAG 1 cut(s) 286
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 4 cut(s) 16, 55, 81, 164
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 3 cut(s) 55, 60, 209
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 5 cut(s) 10, 80, 134, 161, 303
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 85
MalI GATC 3 cut(s) 57, 62, 211
MboI GATC 3 cut(s) 55, 60, 209
MboII GAAGA 2 cut(s) 182, 191
MflI RGATCY 1 cut(s) 55
MluCI AATT 1 cut(s) 183
MnlI CCTC 2 cut(s) 9, 40
MroXI GAANNNNTTC 1 cut(s) 294
Mva1269I GAATGC 1 cut(s) 294
NdeII GATC 3 cut(s) 55, 60, 209
NlaIII CATG 4 cut(s) 16, 55, 81, 164
NmuCI GTSAC 1 cut(s) 85
PctI GAATGC 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 32
PflMI CCANNNNNTGG 2 cut(s) 18, 166
PspFI CCCAGC 1 cut(s) 94
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 2 cut(s) 267, 284
RsaNI GTAC 2 cut(s) 266, 283
Sau3AI GATC 3 cut(s) 55, 60, 209
ScaI AGTACT 1 cut(s) 284
SetI ASST 4 cut(s) 20, 51, 145, 262
Sse9I AATT 1 cut(s) 183
SsiI CCGC 1 cut(s) 120
SspI AATATT 1 cut(s) 250
SspMI CTAG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 270
TaiI ACGT 1 cut(s) 145
TasI AATT 1 cut(s) 183
TatI WGTACW 2 cut(s) 265, 282
TfiI GAWTC 1 cut(s) 32
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspRI CASTG 1 cut(s) 90
Van91I CCANNNNNTGG 2 cut(s) 18, 166
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 1 cut(s) 44
ZrmI AGTACT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.