Rroxscaffold_7G00169280
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
9973604 .. 9980839
7236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169280.1

Sequence Viewer

Length: 4230 bp
ATGGAGAGTAGTAGTGGAGACGTATATAGAGTGAGCAGTGCTCGTCTGAGCAGTTCAAACATTTGGAGGAACAGTACCATGGATGTTTTCTCCAAGTCTTCACACGATGAAGACGATGAAGAAGCGCTGAAATGGGCCGCCATTGAAAAACTGCCAACTTACTTGCGTATAAGGAGAGGCATTCTCACCGAGGAAGAAGGTGAAGCGAGAGAGATTGACATCAAGAATCTTGGATTATTGGAAAGGAAGAATGTGTTGGAGAGGCTGGTGAAAGTTGCAGATGAAGATAATGAGAGGTTCTTGATGAAGCTCAAGGACCGGATTGATCGGGTTGGACTTGATATTCCGACGATTGAAGTCCGGTTTGAGCATTTGAATGTTGAAGCAGAAGCTTATAATGACACTGCTTTTAGGCCCCCAAACTCTGGAAAAACCACATTGCTTTTGTCTTTGGCTGGTAAACTTGCTAAAGATCTAAAGTCTTCTGGGAGAGTTGCATATAACGGACATGGGATGGAAGAGTTTGTACCGGAGAGGACATCAGCTTATATTAGTCAGTATGATCTCCACATAGGGGAAATGACAGTAAGAGAAACACTGGCCTTTTCAGCAAGGTGTCAAGGGGTTGGAGGACGTTATGAAATGTTGGCAGAGTTATCAAGGAGAGAAAAGGCAGCAAATATTATGCCAGAGAAAGATCTTGATATCTACATGAAGGCTGCATCATTAGAAGGGCAGGAGGCCAATGTAGTTACAGATTACATACTCAAGATTCTGGGACTTGAAGTTTGTGCTGACACCATGGTGGGGGATGAAATGTTCCGAGGTATATCTGGCGGACAAAAGAAGCGAGTCACAACAGGGGAAATGCTGGTTGGACCAGCAAGAGCACTTTTTATGGATGAGATATCAACTGGTTTAGACAGTTCAACAACATTTCAGATAGTGAATTCCCTCAGACAAACTATCCACATCCTCAATGGAACTGCTCTTATATCTCTTCTCCAGCCAGCACCGGAAACATATGACCTGTTTGATGACATAATTCTTCTGTCAGATGGGCAAATTGTATACCAAGGTCCCCGTGAAAATGTGCTCGAGTTCTTTGAGTATATGGGCTTCAAATGTCCAGAGAGGAAAGGAGTTGCTGACTTCCTTCAAGAAGTGACTTCAAAGAAGGATCAGGAGCAGTACTGGATACAGAAAGAAGAGCCTTATAATTTTATATCTTCCAAGGAATTTGCTGAAGCATTTCAGTCATTTCATATTGGTCGAAAACTAGGTGATGATCTTGCTACTCCATTTGACAAGTCCAAAGGTCACCCTGCTGCTTTAACAACTAAGAAGTATGGTGTTAGCAAGAGGGAACTGCTCAAAGCCTGCATTGCTAGAGAATATTTGCTGATGAAGAGGAATTCGTTTGTGTACATTTTCAAAATGACCCAGCTCACTCTATTGGCCTTTATATCAATGACACTATTTTTCCGTACTAAGATGCACCGGGATACAGTTGAGGATGGTGGGATTTACATGGGTGCTATGTTCTTCACAGTCATCATAATTATGTTCAATGGGTTCTCCGAGCTTGCATTGACTATCATGAAACTTCCTGTATTTTTCAAGCAAAGAGACCTTCTGTTCTATCCAGCTTGGGCATATTCCTTACCAGCATGGATCCTTAAGATTCCCATCACCTTTGTAGAAGTTGCCATTTGGGTGTTCATGACATACTATGTAATTGGTTTTGATCCAAACCCCGGAAGGTTTTTCAAGCAATATCTTTTGCTCCTATGCATTAACCAGATGGCATCCGGATTATTCCGATTTATGGGGGCATTAGGGAGGAATATAATTGTTGCCAACACATTTGGTTCATTTGCTCTACTTGCAGTTCTGGTGATGGGTGGCTTTATCTTGTCCCGAGAGAATGTGCAGGCGTGGTGGTTATGGGGTTATTGGATCTCACCAATGATGTATGGCCAGAATGCTATAGCTGTCAATGAATTTCTTGGAGACAGTTGGAGTCATATTCCTCCTGATTCAACAGAGTCGTTAGGGATCATGGTCTTGAAGTCTCGTGGGGTTTTCGTACAAGCATATTGGTACTGGATTGGAGTAGGAGCTACAATTGGATATATATTTCTGTTTAATTTCTTCTACACTGTGGCCTTGCATTATCTTGATCCGTTTGGGAAACCTCAGGCTGTACTCTCCAAAGAAGCTTTAGCTGATAAAAACGCTGCTAGAGCTGGAGGAAACATAGAGCTATCATCAAGAGGAAAGAACTCTTCAGATGCAAACAATGATAGTCGAAGAAGTATCTCATCTAGAACACTGTCCGCTAGAGTGGGCAGCTTTAATGAAGCCAATGAAAACAGGAAGAGGGGAATGGTTCTTCCTTTTGAACCCCTTTGGATTACATTTAATGAAATCAAATATTCTGTGGACATGCCCGAGGAAATGAAAACTCAAGGAATAACTGAGGAACGGTTACCACTTCTAAAGGGCGTGACTGGTGCTTTTAGGCCTGGAGTTTTAACAGCTCTAATGGGCATAAGTGGTGCTGGAAAGACTACTCTAATGGATGTCTTGGCAGGCAGAAAAACTGGTGGATATATTGAGGGGGACATAACCATTTCTGGGTATCCAAAAAAGCAAGAAACATTTGCTCGTATATCAGGATATTGTGAGCAAACCGATATACACTCTCCTCATGTTACAGTATATGAGTCTTTGGTTTATTCTGCATGGCTCCGGTTGCCCCCTGAGGTTGATTCCACAACTAGAAAGATGTTTGTTGAGGAAGTCATGGAGCTTGTGGAACTGACGTCGATAAGGGAGTCTCTTGTGGGATTGCCAGGAGTAAATGGTCTCTCAACCGAGCAGCGTAAAAGGCTAACCATTGCTGTAGAACTTGTTGCTAACCCTTCCATAATATTTATGGATGAGCCAACCTCTGGTCTTGATGCAAGGGCAGCAGCTATTGTAATGAGAACAGTGAGGAATACTGTGGACACAGGGCGAACTGTAGTCTGCACTATCCACCAGCCAAGTATCGACATTTTTGATGCTTTTGATGAGCTGTTTCTATTGAAAAGGGGAGGTGAAGAGATATATGTTGGCCCTCTAGGCCGACATTCTTCCCAGTTGATCAAGTATTTTGAGGAAATTGATGGGGTTCCCAAAATCAAGGATGGTTACAATCCAGCAACTTGGATGTTGGAGGTTACTTCAGCAGCACAGGAAGTAGTTCTCGGTATTAACTTTACCGATATATACAGGAGCTCAGAGCTATATAGGAGAAACAAGGACCTGATCAAGGAACTGAGTACTCCTCCGCAAGGCACAAAAGACTTGTACTTCTCTACTAAATACTCTCAGTCTTTCTACTATCAGTGTATGGCTTGTTTATGGAAACAGCATCTATCATACTGGCGAAACCCACCATACAGTGCAGTGAGACTCCTATTCACCACTTTCATAGCCTTAATGTTTGGAACAATATTCTGGGATCTTGGCTCCAAAAGGAAAAACCAACAAGATCTATTCAATGCTATGGGTTCCATGTACGCCGCTGTTCTCTTCATTGGAGTACAAAATGCCTCATCGGTGCAGCCAGTTGTGGCTATCGAGAGGACAGTCTTTTACAGAGAAAGGGCTGCTGGAATGTACTCAGCATTGCCATATGCCTTCGGACAAGTATTTTACTCATCTGAAGTTGTGATTGAGCTTCCATACATCTTTGTCCAGACTGTCATATATGGAGTTATAGTATACGCCATGATTGGATTTGACTGGACAGTGAGCAAGTTCCTTTGGTATCTCTTCTTCATGTACTTCACTTTCTTATACTTTACATTCTATGGGATGATGACCGTGGCTGTTACACCCAACCACAACATTGCCGCCATAGTGTCCTCTGCCTTCTATGCAATATGGAACCTTTTCTCAGGATTCATTGTTCCCCGAACTAGAATGCCAATTTGGTGGAGATGGTACTATTGGATCTGCCCGGTCTCATATACATTGTATGGACTTGTTGCTTCACAGTTTGGAGACATAAAAGAAGTAATGGATTCAGGTGAAAGTGTGGAAGACTTTGTGAGGAACTACTTTGGTTACAGACACGACTTTGTAGGTATTGTTGCAGTTGTGCTTGTTGGGATTTCAGTGCTTTTCGGGTTCACCTTTGCCTTCTCGATCAAGGCATTCAACTTCCAAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1409

Amino Acids

159.92

Weight (kDa)

6.15

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 142 - 302 2.8e-09 ABC transporter
ABC2_membrane_7 PF19055 336 - 388 1e-05 ABC-2 type transporter
ABC2_membrane PF01061 457 - 669 1.2e-47 ABC-2 type transporter
PDR_assoc PF08370 674 - 736 1e-27 Plant PDR ABC transporter associated
ABC_tran PF00005 834 - 986 5.5e-20 ABC transporter
ABC2_membrane PF01061 1131 - 1351 1.9e-60 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 396, 1218
AatII GACGTC 1 cut(s) 2831
AccB7I CCANNNNNTGG 2 cut(s) 425, 2957
AccI GTMKAC 2 cut(s) 1071, 3774
AccIII TCCGGA 1 cut(s) 1811
AciI CCGC 6 cut(s) 138, 837, 2340, 3338, 3573, 3906
AclWI GGATC 9 cut(s) 1188, 1669, 1682, 1742, 1967, 2066, 2177, 3519, 4013
AcoI YGGCCR 1 cut(s) 1978
AcsI RAATTY 4 cut(s) 949, 1238, 1414, 2003
AcuI CTGAAG 4 cut(s) 1266, 2274, 3216, 3735
AcyI GRCGYC 1 cut(s) 2828
AfeI AGCGCT 1 cut(s) 126
AfiI CCNNNNNNNGG 9 cut(s) 425, 574, 807, 1757, 1828, 2640, 2957, 3319, 3341
AflII CTTAAG 1 cut(s) 1679
AjnI CCWGG 2 cut(s) 2527, 2857
AjuI GAANNNNNNNTTGG 6 cut(s) 239, 271, 858, 890, 3967, 3999
AleI CACNNNNGTG 1 cut(s) 803
AloI GAACNNNNNNTCC 4 cut(s) 803, 835, 3945, 3977
Alw21I GWGCWC 4 cut(s) 43, 892, 1098, 3287
Alw26I GTCTC 9 cut(s) 12, 1623, 2007, 2079, 2847, 2876, 3454, 4021, 4050
AlwI GGATC 9 cut(s) 1188, 1669, 1682, 1742, 1967, 2066, 2177, 3519, 4013
Ama87I CYCGRG 3 cut(s) 1097, 1920, 2453
Aor13HI TCCGGA 1 cut(s) 1811
Aor51HI AGCGCT 1 cut(s) 126
ApoI RAATTY 4 cut(s) 949, 1238, 1414, 2003
ArsI GACNNNNNNTTYG 2 cut(s) 771, 803
Asp700I GAANNNNTTC 3 cut(s) 1251, 3249, 3944
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 7 cut(s) 135, 316, 414, 878, 1079, 3122, 3310
AsuC2I CCSGG 3 cut(s) 1502, 1758, 4013
AvaI CYCGRG 3 cut(s) 1097, 1920, 2453
AvaII GGWCC 4 cut(s) 316, 878, 1079, 3310
AxyI CCTNAGG 2 cut(s) 2199, 2766
BalI TGGCCA 1 cut(s) 1980
BamHI GGATCC 1 cut(s) 1674
BanII GRGCYC 1 cut(s) 3287
BarI GAAGNNNNNNTAC 6 cut(s) 510, 542, 1103, 1135, 3812, 3844
BauI CACGAG 1 cut(s) 2076
BbsI GAAGAC 4 cut(s) 90, 117, 474, 4101
Bbv12I GWGCWC 4 cut(s) 43, 892, 1098, 3287
BccI CCATC 9 cut(s) 508, 1052, 1511, 1697, 1798, 1894, 3167, 3188, 3987
BciT130I CCWGG 2 cut(s) 2529, 2859
BciVI GTATCC 3 cut(s) 1191, 1498, 2655
BclI TGATCA 2 cut(s) 3150, 3315
BcnI CCSGG 3 cut(s) 1502, 1758, 4013
BcoDI GTCTC 9 cut(s) 12, 1623, 2007, 2079, 2847, 2876, 3454, 4021, 4050
BfaI CTAG 8 cut(s) 1280, 1389, 2244, 2328, 2343, 2784, 3128, 3972
BfmI CTRYAG 3 cut(s) 1989, 2907, 3027
BfoI RGCGCY 1 cut(s) 128
BfrI CTTAAG 1 cut(s) 1679
BfuI GTATCC 3 cut(s) 1191, 1498, 2655
BglI GCCNNNNNGGC 1 cut(s) 3129
BglII AGATCT 3 cut(s) 472, 697, 3541
BmcAI AGTACT 2 cut(s) 1193, 3331
Bme1390I CCNGG 5 cut(s) 1502, 1758, 2529, 2859, 4013
Bme18I GGWCC 4 cut(s) 316, 878, 1079, 3310
BmeT110I CYCGRG 3 cut(s) 1097, 1920, 2453
BmgT120I GGNCC 7 cut(s) 135, 316, 414, 878, 1079, 3122, 3310
BmiI GGNNCC 8 cut(s) 416, 1081, 1676, 2753, 3180, 3520, 3562, 3941
BmrFI CCNGG 5 cut(s) 1502, 1758, 2529, 2859, 4013
BmrI ACTGGG 1 cut(s) 3139
BmsI GCATC 7 cut(s) 731, 1485, 1817, 2284, 2956, 3058, 3430
BmuI ACTGGG 1 cut(s) 3139
BpiI GAAGAC 4 cut(s) 90, 117, 474, 4101
BplI GAGNNNNNCTC 8 cut(s) 25, 57, 168, 200, 2939, 2971, 3319, 3351
BpmI CTGGAG 3 cut(s) 989, 2271, 2550
BpuEI CTTGAG 3 cut(s) 296, 752, 2454
BpuMI CCSGG 3 cut(s) 1502, 1758, 4013
BsaBI GATNNNNATC 2 cut(s) 218, 1688
BsaHI GRCGYC 1 cut(s) 2828
BsaI GGTCTC 3 cut(s) 1623, 2876, 4021
BsaJI CCNNGG 9 cut(s) 78, 189, 801, 823, 1075, 1233, 1756, 2454, 3876
BsaWI WCCGGW 6 cut(s) 318, 360, 529, 1015, 1811, 2754
BsaXI ACNNNNNCTCC 4 cut(s) 58, 88, 3756, 3786
Bsc4I CCNNNNNNNGG 9 cut(s) 425, 574, 807, 1757, 1828, 2640, 2957, 3319, 3341
Bse21I CCTNAGG 2 cut(s) 2199, 2766
Bse3DI GCAATG 5 cut(s) 437, 1383, 2901, 3677, 3900
Bse8I GATNNNNATC 2 cut(s) 218, 1688
BseAI TCCGGA 1 cut(s) 1811
BseBI CCWGG 2 cut(s) 2529, 2859
BseDI CCNNGG 9 cut(s) 78, 189, 801, 823, 1075, 1233, 1756, 2454, 3876
BseJI GATNNNNATC 2 cut(s) 218, 1688
BseLI CCNNNNNNNGG 9 cut(s) 425, 574, 807, 1757, 1828, 2640, 2957, 3319, 3341
BseMI GCAATG 5 cut(s) 437, 1383, 2901, 3677, 3900
BseRI GAGGAG 2 cut(s) 2700, 3324
BseYI CCCAGC 1 cut(s) 1443
BsgI GTGCAG 4 cut(s) 1952, 3019, 3474, 3632
BsiHKAI GWGCWC 4 cut(s) 43, 892, 1098, 3287
BsiHKCI CYCGRG 3 cut(s) 1097, 1920, 2453
BsiSI CCGG 9 cut(s) 319, 361, 530, 1016, 1501, 1758, 1812, 2755, 4013
BslFI GGGAC 4 cut(s) 792, 1065, 1903, 2639
BslI CCNNNNNNNGG 9 cut(s) 425, 574, 807, 1757, 1828, 2640, 2957, 3319, 3341
BsmAI GTCTC 9 cut(s) 12, 1623, 2007, 2079, 2847, 2876, 3454, 4021, 4050
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 4 cut(s) 792, 1065, 1903, 2639
BsmI GAATGC 4 cut(s) 180, 1990, 3981, 4208
Bso31I GGTCTC 3 cut(s) 1623, 2876, 4021
BsoBI CYCGRG 3 cut(s) 1097, 1920, 2453
Bsp1286I GDGCHC 4 cut(s) 43, 892, 1098, 3287
Bsp13I TCCGGA 1 cut(s) 1811
Bsp1407I TGTACA 1 cut(s) 1425
Bsp19I CCATGG 2 cut(s) 78, 801
BspACI CCGC 6 cut(s) 138, 837, 2340, 3338, 3573, 3906
BspEI TCCGGA 1 cut(s) 1811
BspHI TCATGA 2 cut(s) 1599, 1722
BspLI GGNNCC 8 cut(s) 416, 1081, 1676, 2753, 3180, 3520, 3562, 3941
BspPI GGATC 9 cut(s) 1188, 1669, 1682, 1742, 1967, 2066, 2177, 3519, 4013
BspQI GCTCTTC 1 cut(s) 1203
BspTI CTTAAG 1 cut(s) 1679
BspTNI GGTCTC 3 cut(s) 1623, 2876, 4021
BsrDI GCAATG 5 cut(s) 437, 1383, 2901, 3677, 3900
BsrGI TGTACA 1 cut(s) 1425
BssECI CCNNGG 9 cut(s) 78, 189, 801, 823, 1075, 1233, 1756, 2454, 3876
BssNAI GTATAC 2 cut(s) 1072, 3775
BssNI GRCGYC 1 cut(s) 2828
BssSI CACGAG 1 cut(s) 2076
BssT1I CCWWGG 4 cut(s) 78, 801, 1075, 1233
Bst1107I GTATAC 2 cut(s) 1072, 3775
Bst2BI CACGAG 1 cut(s) 2076
Bst2UI CCWGG 2 cut(s) 2529, 2859
Bst6I CTCTTC 9 cut(s) 513, 1005, 1203, 1403, 2293, 2375, 3102, 3587, 3830
BstACI GRCGYC 1 cut(s) 2828
BstAFI CTTAAG 1 cut(s) 1679
BstAUI TGTACA 1 cut(s) 1425
BstC8I GCNNGC 5 cut(s) 1011, 1381, 1587, 1935, 2596
BstDSI CCRYGG 3 cut(s) 78, 801, 3876
BstEII GGTNACC 2 cut(s) 1319, 2490
BstENI CCTNNNNNAGG 2 cut(s) 3317, 3339
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstMAI GTCTC 9 cut(s) 12, 1623, 2007, 2079, 2847, 2876, 3454, 4021, 4050
BstMWI GCNNNNNNNGC 9 cut(s) 608, 1385, 1886, 2246, 2758, 2893, 2975, 3129, 3929
BstNI CCWGG 2 cut(s) 2529, 2859
BstNSI RCATGY 1 cut(s) 2452
BstPI GGTNACC 2 cut(s) 1319, 2490
BstSCI CCNGG 5 cut(s) 1500, 1756, 2527, 2857, 4011
BstSFI CTRYAG 3 cut(s) 1989, 2907, 3027
BstV2I GAAGAC 4 cut(s) 90, 117, 474, 4101
BstX2I RGATCY 7 cut(s) 472, 697, 1674, 1959, 3511, 3541, 4005
BstXI CCANNNNNNTGG 2 cut(s) 3213, 3987
BstYI RGATCY 7 cut(s) 472, 697, 1674, 1959, 3511, 3541, 4005
BstZ17I GTATAC 2 cut(s) 1072, 3775
Bsu36I CCTNAGG 2 cut(s) 2199, 2766
BsuI GTATCC 3 cut(s) 1191, 1498, 2655
BtgI CCRYGG 3 cut(s) 78, 801, 3876
BtsI GCAGTG 3 cut(s) 43, 402, 3462
Cac8I GCNNGC 5 cut(s) 1011, 1381, 1587, 1935, 2596
CciI TCATGA 2 cut(s) 1599, 1722
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 7 cut(s) 135, 316, 414, 878, 1079, 3122, 3310
EaeI YGGCCR 1 cut(s) 1978
Eam1104I CTCTTC 9 cut(s) 513, 1005, 1203, 1403, 2293, 2375, 3102, 3587, 3830
EarI CTCTTC 9 cut(s) 513, 1005, 1203, 1403, 2293, 2375, 3102, 3587, 3830
EciI GGCGGA 1 cut(s) 852
Ecl136II GAGCTC 1 cut(s) 3285
Eco130I CCWWGG 4 cut(s) 78, 801, 1075, 1233
Eco147I AGGCCT 1 cut(s) 2527
Eco24I GRGCYC 1 cut(s) 3287
Eco31I GGTCTC 3 cut(s) 1623, 2876, 4021
Eco32I GATATC 2 cut(s) 706, 909
Eco47I GGWCC 4 cut(s) 316, 878, 1079, 3310
Eco47III AGCGCT 1 cut(s) 126
Eco53kI GAGCTC 1 cut(s) 3285
Eco57I CTGAAG 4 cut(s) 1266, 2274, 3216, 3735
Eco81I CCTNAGG 2 cut(s) 2199, 2766
Eco88I CYCGRG 3 cut(s) 1097, 1920, 2453
Eco91I GGTNACC 2 cut(s) 1319, 2490
EcoICRI GAGCTC 1 cut(s) 3285
EcoNI CCTNNNNNAGG 2 cut(s) 3317, 3339
EcoO109I RGGNCCY 3 cut(s) 414, 1079, 3310
EcoO65I GGTNACC 2 cut(s) 1319, 2490
EcoRI GAATTC 2 cut(s) 949, 1414
EcoRII CCWGG 2 cut(s) 2527, 2857
EcoRV GATATC 2 cut(s) 706, 909
EcoT14I CCWWGG 4 cut(s) 78, 801, 1075, 1233
EcoT22I ATGCAT 1 cut(s) 1796
EcoT38I GRGCYC 1 cut(s) 3287
ErhI CCWWGG 4 cut(s) 78, 801, 1075, 1233
Esp3I CGTCTC 1 cut(s) 12
FaqI GGGAC 4 cut(s) 792, 1065, 1903, 2639
FauNDI CATATG 2 cut(s) 1024, 3685
FbaI TGATCA 2 cut(s) 3150, 3315
FblI GTMKAC 2 cut(s) 1071, 3774
FriOI GRGCYC 1 cut(s) 3287
FspBI CTAG 8 cut(s) 1280, 1389, 2244, 2328, 2343, 2784, 3128, 3972
GlaI GCGC 1 cut(s) 126
GsaI CCCAGC 1 cut(s) 1447
GsuI CTGGAG 3 cut(s) 989, 2271, 2550
HaeII RGCGCY 1 cut(s) 128
HapII CCGG 9 cut(s) 319, 361, 530, 1016, 1501, 1758, 1812, 2755, 4013
HhaI GCGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 2828
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HindIII AAGCTT 2 cut(s) 390, 2220
HpaII CCGG 9 cut(s) 319, 361, 530, 1016, 1501, 1758, 1812, 2755, 4013
Hpy166II GTNNAC 7 cut(s) 461, 1072, 1426, 2446, 3013, 3775, 4185
Hpy8I GTNNAC 7 cut(s) 461, 1072, 1426, 2446, 3013, 3775, 4185
Hpy99I CGWCG 2 cut(s) 352, 2833
HpyCH4IV ACGT 3 cut(s) 21, 634, 2828
HpyF10VI GCNNNNNNNGC 9 cut(s) 608, 1385, 1886, 2246, 2758, 2893, 2975, 3129, 3929
HpySE526I ACGT 3 cut(s) 21, 634, 2828
Hsp92I GRCGYC 1 cut(s) 2828
HspAI GCGC 1 cut(s) 125
Kpn2I TCCGGA 1 cut(s) 1811
Ksp22I TGATCA 2 cut(s) 3150, 3315
LguI GCTCTTC 1 cut(s) 1203
LmnI GCTCC 7 cut(s) 1186, 1791, 2120, 2757, 2812, 3282, 3524
LweI GCATC 7 cut(s) 731, 1485, 1817, 2284, 2956, 3058, 3430
MaeI CTAG 8 cut(s) 1280, 1389, 2244, 2328, 2343, 2784, 3128, 3972
MaeII ACGT 3 cut(s) 21, 634, 2828
MfeI CAATTG 1 cut(s) 2127
MflI RGATCY 7 cut(s) 472, 697, 1674, 1959, 3511, 3541, 4005
MhlI GDGCHC 4 cut(s) 43, 892, 1098, 3287
MlsI TGGCCA 1 cut(s) 1980
MluNI TGGCCA 1 cut(s) 1980
MlyI GAGTC 6 cut(s) 861, 2032, 2057, 2738, 2849, 3456
MmeI TCCRAC 7 cut(s) 237, 313, 371, 607, 856, 2000, 3201
Mox20I TGGCCA 1 cut(s) 1980
Mph1103I ATGCAT 1 cut(s) 1796
MroI TCCGGA 1 cut(s) 1811
MroXI GAANNNNTTC 3 cut(s) 1251, 3249, 3944
MscI TGGCCA 1 cut(s) 1980
MseI TTAA 9 cut(s) 1334, 1680, 1797, 2148, 2358, 2424, 2537, 3261, 3488
MslI CAYNNNNRTG 4 cut(s) 375, 803, 1562, 1715
Msp20I TGGCCA 1 cut(s) 1980
MspA1I CMGCKG 1 cut(s) 3575
MspCI CTTAAG 1 cut(s) 1679
MspI CCGG 9 cut(s) 319, 361, 530, 1016, 1501, 1758, 1812, 2755, 4013
MspR9I CCNGG 5 cut(s) 1502, 1758, 2529, 2859, 4013
MunI CAATTG 1 cut(s) 2127
Mva1269I GAATGC 4 cut(s) 180, 1990, 3981, 4208
MvaI CCWGG 2 cut(s) 2529, 2859
MwoI GCNNNNNNNGC 9 cut(s) 608, 1385, 1886, 2246, 2758, 2893, 2975, 3129, 3929
NciI CCSGG 3 cut(s) 1502, 1758, 4013
NcoI CCATGG 2 cut(s) 78, 801
NdeI CATATG 2 cut(s) 1024, 3685
NlaIV GGNNCC 8 cut(s) 416, 1081, 1676, 2753, 3180, 3520, 3562, 3941
NmuCI GTSAC 4 cut(s) 853, 1165, 1319, 2509
NsiI ATGCAT 1 cut(s) 1796
NspI RCATGY 1 cut(s) 2452
OliI CACNNNNGTG 1 cut(s) 803
PaeR7I CTCGAG 1 cut(s) 1097
PagI TCATGA 2 cut(s) 1599, 1722
PceI AGGCCT 1 cut(s) 2527
PciSI GCTCTTC 1 cut(s) 1203
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 4 cut(s) 180, 1990, 3981, 4208
PdmI GAANNNNTTC 3 cut(s) 1251, 3249, 3944
PfeI GAWTC 7 cut(s) 226, 772, 1684, 2039, 2774, 3954, 4076
PflMI CCANNNNNTGG 2 cut(s) 425, 2957
PleI GAGTC 6 cut(s) 860, 2031, 2056, 2737, 2848, 3456
PpsI GAGTC 6 cut(s) 860, 2031, 2056, 2737, 2848, 3456
PpuMI RGGWCCY 2 cut(s) 1079, 3310
PsiI TTATAA 2 cut(s) 396, 1218
Psp124BI GAGCTC 1 cut(s) 3287
Psp5II RGGWCCY 2 cut(s) 1079, 3310
Psp6I CCWGG 2 cut(s) 2527, 2857
PspEI GGTNACC 2 cut(s) 1319, 2490
PspFI CCCAGC 1 cut(s) 1443
PspGI CCWGG 2 cut(s) 2527, 2857
PspN4I GGNNCC 8 cut(s) 416, 1081, 1676, 2753, 3180, 3520, 3562, 3941
PspPI GGNCC 7 cut(s) 135, 316, 414, 878, 1079, 3122, 3310
PspPPI RGGWCCY 2 cut(s) 1079, 3310
PspXI VCTCGAGB 1 cut(s) 1097
PsuI RGATCY 7 cut(s) 472, 697, 1674, 1959, 3511, 3541, 4005
RseI CAYNNNNRTG 4 cut(s) 375, 803, 1562, 1715
SacI GAGCTC 1 cut(s) 3287
SapI GCTCTTC 1 cut(s) 1203
SaqAI TTAA 9 cut(s) 1334, 1680, 1797, 2148, 2358, 2424, 2537, 3261, 3488
Sau96I GGNCC 7 cut(s) 135, 316, 414, 878, 1079, 3122, 3310
ScaI AGTACT 2 cut(s) 1193, 3331
SchI GAGTC 6 cut(s) 861, 2032, 2057, 2738, 2849, 3456
ScrFI CCNGG 5 cut(s) 1502, 1758, 2529, 2859, 4013
SduI GDGCHC 4 cut(s) 43, 892, 1098, 3287
SfaNI GCATC 7 cut(s) 731, 1485, 1817, 2284, 2956, 3058, 3430
SfcI CTRYAG 3 cut(s) 1989, 2907, 3027
SfiI GGCCNNNNNGGCC 1 cut(s) 3129
Sfr274I CTCGAG 1 cut(s) 1097
SinI GGWCC 4 cut(s) 316, 878, 1079, 3310
SlaI CTCGAG 1 cut(s) 1097
SmiMI CAYNNNNRTG 4 cut(s) 375, 803, 1562, 1715
SmlI CTYRAG 5 cut(s) 311, 767, 1097, 1679, 2469
SmoI CTYRAG 5 cut(s) 311, 767, 1097, 1679, 2469
SseBI AGGCCT 1 cut(s) 2527
SsiI CCGC 6 cut(s) 138, 837, 2340, 3338, 3573, 3906
SspI AATATT 5 cut(s) 682, 1397, 2438, 2937, 3504
SspMI CTAG 8 cut(s) 1280, 1389, 2244, 2328, 2343, 2784, 3128, 3972
SstI GAGCTC 1 cut(s) 3287
StuI AGGCCT 1 cut(s) 2527
StyD4I CCNGG 5 cut(s) 1500, 1756, 2527, 2857, 4011
StyI CCWWGG 4 cut(s) 78, 801, 1075, 1233
TaiI ACGT 3 cut(s) 24, 637, 2831
TaqI TCGA 7 cut(s) 1098, 1273, 2311, 2831, 3057, 3630, 4199
TatI WGTACW 8 cut(s) 1191, 1425, 2206, 3329, 3357, 3592, 3669, 3834
TauI GCSGC 3 cut(s) 140, 3575, 3908
TfiI GAWTC 7 cut(s) 226, 772, 1684, 2039, 2774, 3954, 4076
Tru1I TTAA 9 cut(s) 1334, 1680, 1797, 2148, 2358, 2424, 2537, 3261, 3488
Tru9I TTAA 9 cut(s) 1334, 1680, 1797, 2148, 2358, 2424, 2537, 3261, 3488
TseFI GTSAC 4 cut(s) 853, 1165, 1319, 2509
Tsp45I GTSAC 4 cut(s) 853, 1165, 1319, 2509
TspGWI ACGGA 3 cut(s) 519, 1475, 2175
Van91I CCANNNNNTGG 2 cut(s) 425, 2957
Vha464I CTTAAG 1 cut(s) 1679
VpaK11BI GGWCC 4 cut(s) 316, 878, 1079, 3310
XagI CCTNNNNNAGG 2 cut(s) 3317, 3339
XapI RAATTY 4 cut(s) 949, 1238, 1414, 2003
XbaI TCTAGA 1 cut(s) 2327
XceI RCATGY 1 cut(s) 2452
XcmI CCANNNNNNNNNTGG 2 cut(s) 977, 2938
XhoI CTCGAG 1 cut(s) 1097
XmiI GTMKAC 2 cut(s) 1071, 3774
XmnI GAANNNNTTC 3 cut(s) 1251, 3249, 3944
XspI CTAG 8 cut(s) 1280, 1389, 2244, 2328, 2343, 2784, 3128, 3972
ZraI GACGTC 1 cut(s) 2829
ZrmI AGTACT 2 cut(s) 1193, 3331
Zsp2I ATGCAT 1 cut(s) 1796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.