Rh2CG235100

Aspartokinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
24182940 .. 24183724
785 bp
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UTR
Exon/CDS
Intron
Rh2CG235100.1

Sequence Viewer

Length: 267 bp
ATGTATAGTGATCAACCTCCTGCTACTGGGTGGAGATCATGTGCAGTGACCACGCTGGGTAGAGATGGTAGTGATTTGACAGCTACAACCATTGGTAAAGCACGTTGGCAGGAACTTGACCATTTTGTGGAAGAACTGGAGAAAATTGTTGTTGTCAATCTTCAGCACCGATCAATATCTCATTGGAAATGTGTAGAAATCATCACTAATATTAGAGAAGGTGTTGTACTGTGTTTTGCCAAGTACTTAGAAAGCATTCCCTATTGA

Protein Analysis

88

Amino Acids

10.02

Weight (kDa)

5.85

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 2 cut(s) 228, 245
AfiI CCNNNNNNNGG 2 cut(s) 26, 127
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 255
BarI GAAGNNNNNNTAC 2 cut(s) 210, 242
BccI CCATC 1 cut(s) 59
BclI TGATCA 1 cut(s) 10
BmcAI AGTACT 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 36
BmuI ACTGGG 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 127
Bse1I ACTGG 2 cut(s) 31, 141
Bse8I GATNNNNATC 1 cut(s) 175
BseJI GATNNNNATC 1 cut(s) 175
BseLI CCNNNNNNNGG 2 cut(s) 26, 127
BseNI ACTGG 2 cut(s) 31, 141
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 26, 127
BsmI GAATGC 1 cut(s) 255
Bsp143I GATC 3 cut(s) 10, 35, 170
BsrI ACTGG 2 cut(s) 31, 141
BssMI GATC 3 cut(s) 10, 35, 170
Bst4CI ACNGT 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 247
BstKTI GATC 3 cut(s) 13, 38, 173
BstMBI GATC 3 cut(s) 10, 35, 170
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Csp6I GTAC 2 cut(s) 227, 244
CviAII CATG 1 cut(s) 39
CviJI RGCY 1 cut(s) 83
CviKI_1 RGCY 1 cut(s) 83
CviQI GTAC 2 cut(s) 227, 244
DdeI CTNAG 1 cut(s) 247
DpnI GATC 3 cut(s) 12, 37, 172
DpnII GATC 3 cut(s) 10, 35, 170
Eco57I CTGAAG 1 cut(s) 146
FaeI CATG 1 cut(s) 42
FaiI YATR 2 cut(s) 6, 40
FatI CATG 1 cut(s) 38
FbaI TGATCA 1 cut(s) 10
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 158
Hin1II CATG 1 cut(s) 42
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 247
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 3 cut(s) 10, 35, 170
LpnPI CCDG 5 cut(s) 12, 33, 41, 95, 122
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 46
MalI GATC 3 cut(s) 12, 37, 172
MboI GATC 3 cut(s) 10, 35, 170
MboII GAAGA 2 cut(s) 143, 152
MluCI AATT 1 cut(s) 144
MnlI CCTC 1 cut(s) 27
MroXI GAANNNNTTC 1 cut(s) 255
Mva1269I GAATGC 1 cut(s) 255
NdeII GATC 3 cut(s) 10, 35, 170
NlaIII CATG 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 46
PctI GAATGC 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 255
PflMI CCANNNNNTGG 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 55
RsaI GTAC 2 cut(s) 228, 245
RsaNI GTAC 2 cut(s) 227, 244
Sau3AI GATC 3 cut(s) 10, 35, 170
ScaI AGTACT 1 cut(s) 245
SetI ASST 4 cut(s) 19, 85, 106, 223
Sse9I AATT 1 cut(s) 144
SspI AATATT 1 cut(s) 211
TaaI ACNGT 1 cut(s) 231
TaiI ACGT 1 cut(s) 106
TasI AATT 1 cut(s) 144
TatI WGTACW 2 cut(s) 226, 243
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspRI CASTG 1 cut(s) 51
Van91I CCANNNNNTGG 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 255
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.