pycom08g11890
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
10174198 .. 10180634
6437 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g11890.4

Sequence Viewer

Length: 4236 bp
ATGGAAGTTTTTTCGAGGTCTTCGCGAGCTGAAGACGATGAAGAAGCTCTGAAATGGGCTGCGCTTGAAAGGCTGCCTACTTGTTTACGTGTTGGAAGAGGCTTATTCATTGATGGTGAGGGACAAGCTAGAGAGGTTGATGTGGAGAATCTGGGCTTGTTGGAGAGAAGGACTTTGTTGGAAAGGCTGGTGAGCAATGCAGAGAAAGATAATGAGAAGTTCTTGTTGAAGCTCAAGAACCGCATTGATCGAGTTGGTCTTAATGTGCCAACAATTGAAGTCCGGTTCGAGCGTCTGACTGTGGAGGCAAAAGTTTATATTGGCAGCAGAGCACTGCCTACGTTACTCAACTTTTCAATCAACATGTTGCAGGGAATGCTACATGATCTTCGAATTTTTCCGAGTAGAAAGATGCCTCTAAAAATCCTTCAAAACATTAGTGGAATCATCAAGCCTCAAAGAATGACTCTACTCTTAGGTCCCCCAAGCTCTGGAAAAACCACGTTACTATTGGCGTTGGCCGGAAGACTTGGTAGAGATTTAAATTCTTCCGGGCGGATTACATATAACGGACATGGGATGGAAGAATTTGTACCTCAGAGAACATCGGCTTATGTAAGTCAAAACGATCTCCATATAGGAGAGCTGACAGTGAAAGAGACATTTGCTTTCTCGGCTAGATGTCAAGGAGTTGGATCAAATTGCGACATGTTGGTGGAACTGTGTAGAAGAGAGAAGGAGGGAAATATCAAGCCTGATCCTGACATTGACATATATCTGAAGGCAGCGGCTCTAGAAGGGCAGGAGACCAATGTAGTTACTGATTACATTCTCAAGATTCTCGGACTTGAAGTCTGTGCTAATACTATGGTGGGAGATGATATGGTAAGAGGCATCTCTGGTGGAGAAAGAAAGCGAGTCACGATAGGGGAGATGCTTGTTGGACCGGTAAAAGCTCTCTTCATGGATGAGATTTCAACCGGCTTGGACAGTTCGACAACTTTCCAAATAGTAAATTCAATCAGGCAATCCATCCACATTCTAAGTGGAACTGCAGTGGTCTCCCTCCTCCAGCCAGCCCCTGAAACTTATAACCTCTTTGATGACATAATTCTTCTATCAGATGGACAAATCGTGTATCAGGGCCCGCGTGAAAATGTGCTCGAGTTTTTTGAATCCATAGGCTTCATATGTCCGGATAGAAAAGGAGTTGCTGACTTCTTGCAAGAGGTGACATCAAAGAAGGATCAAGAGCAGTACTGGGCACGTCGAGACAAGCCTTACAGATTTGTTACTGTCAATGAGTTTGTCGAAGCTTTCCAGTCATTTCCAATTGGTCAGAAACTCGGCGACGAGCTTGCTACTCCCTTCGACAAGTCCAGAAGTCATCGTGCTGCTTTATCATCTAAAAGGTATGGCGTTAACAAGAAGGAGTTGTTCCGAGCATGCGTTTCAAGAGAGTTCTTGCTCATGAAGAGGAACTCATTTGCCTACGTTTTCAAACTTGCCCTACTTAGTATCTTAGCTTCTATAACATCATCGATATTTCTACGAATCAAGATGCATAAGGACTCAGTGGTGGATGGTGGAGTTTACATGGGAGCTTTGTTCTTCGCAGTCATTGTAGCGATGTTTAACGGAATATCAGAACTCAACATGGCAATTATGAAACTTCCTGTCTTTTACAAGCAGAGAGACCTTCTCTTCTTTCCTTCCTGGGCTTACTCACTTCCTGCATGGATCCTCAAGATCCCAATCAGTTTGGGCGAAAGTGCCATTTGGGTTGTCATTACTTATTATGTAATAGGATTTGATCCATATGTTGAAAGGTTCTTCAAGCAGTACATTGTACTCTTGTGCATAAACCAGATGGCGTCTGGGCTGTTCAGGTTGATAGCAGCCTTGGGAAGGGATGTAACAGTTGCAAGCACAACAGGATCCTTTGCACTGCTTATAATTATGGTTTTGGGCGGATTCGTCTTATCTCGAGATGCTGTTCCAAAATGGTGGCTGTGGGGTTACTGGGTCTCGCCGTTGATGTATGGACAAAATGCTATTACTGTGAATGAATTTCTTGGAAAGAGTTGGAGACAAGTTCCACCTAATTCTACAGAATCCTTGGGAGTTCTGATCCTGAAGTCTCATGGAATTTTCCCAGAAGCAAAATTGTTTTGGATTGGAGTAGCAGCATTGATTGGATATATTTTTCTATTCAATCTCCTCCTTACTTTGGCTCTGCAGTATCTTGATCCACTCGGGAAGCCTCAGACAATGCTAACCAAAGAAAGCATGGCTGAGAGAAATTTTAGCAGAAATGGAGAGTTCATTGAGCTAATACCAAGAGGAAAGATCTCTTCTGAATCCGAAAGAGTGGGAAGAACTGATGAAGCTAATGGAAAAAGGAAGCGAGGGATGGTTCTTCCTTTTCAACCCCTTTCCCTCACTTTCAATGAGATCAGATATGCCATAGATATGCCACAAGAAATGAAAGCGGAGGGTGTTCAGGAGGATCAGCTTGAACTTCTGAAGGGTGTAAGTGGTGCTTTTAGGCCAGGAGTCTTAACAGCTTTAATGGGAGTCAGTGGTGCTGGCAAGACCACTCTAATGGATGTGTTGGCTGGAAGGAAAACTGGTGGACATATCAAGGGAAACATCACGATCTCTGGTTATCCTAAAAGGCAAGAAACGTTCGCTCGCATATCTGGATACTGTGAGCAAACTGATATCCACTCTCCCCATGTGACAGTCTATGAATCTCTACTTTTTTCTGCGTGGCTCCGGCTACTACCTGAGGTTGATTCTGCAACAAGAGAGATGTTTATCGAAGAAGTCATGGAACTTGTGGAGCTGACTTCATTCAGGGGAGCTCTTGTGGGATTACCTGGTGTAACCGGTCTTTCAACTGAGCAGCGCAAAAGGCTAACAGTCGCAGTTGAGCTCGTTGCAAATCCATCGATAATCTTCATGGACGAACCAACATCTGGCCTCGATGCTAGGGCAGCAGCGATTGTGATGAGAACAGTGAGGAACACAGTGGACACGGGAAGAACTGTGGTTTGTACCATCCACCAGCCAAGCATAGATATATTTGATGCTTTCGATGAGCTTCTTCTTCTGAAATTGGGAGGTGAGCAAATATATGCCGGTCCATTAGGCTCCCATTGCTCCATTCTGATCAATTATTTTGAGGGAATCAATGGAGTTCCAAAGATTAAAGATGGATATAACCCGGCAACCTGGATGCTGGAGGTTACTTCAGCCGCACAAGAGGCAGCTCTTGGGGTTAACTTCACAGATGCATACAATAACTCGGAAATATATAAGAGAACCAAAGCAATGATTGAGGAATTAAACACACCTCCCTTGGGTTCTAAAGATCTATACTTCCCTACTCGCTACTCACGATCTTTTCTCACCCAATGTATGGCTTGCCTGTGGAAACAGCACTGGTCATATTGGCGAAACCCATCATATAGTGCAGTAAGGCTGTTGTTCACAACGTTCATTGCTTTATTATTCGGTTTGATATTCTGGAACCTTGGATCAAAAAGGAGTAGGCAGCAAGATCTCTTCAATGCAATGGGTTCCATGTACGCTGCTGTTATCTTTATCGGGGTACAAAATGGTGCCTCAGTGCAGCCGGTTGTGGCCGTTGAGAGAACGGTCTTTTACAGAGAAAGAGCAGCTGGAATGTATTCCGCTTTGCCATACGCATTTGGGCAGATGATGATTGAGGTTCCCTACATCTTCATTCAGACCATTATTTACGGAGCTATAGTATACGCCATGATGGGATTCGATTGGATAGCTGCCAAGTTCTTATGGTATCTTTTCTTCATGTACTTCACCTTGCTGTACTTCACATTCTATGGCATGATGACCATGGCTCTCACTCCCAACCACAACATTGCTGCCATAACTTCATCTACCTTCTACGCAATCTGGAACCTCTTCTCGGGATTCGTTGTTCCCCCAACGAGGATTCCGATATGGTGGAAATGGTACTATTGGGTCTGCCCCGTTGCCTGGACCTTGTATGGAATGGTTGCTTCACAATTTGGAGACGTAAAGGAGAAACTGGAGTCAGGAGAATCGGTAGAGCATTTTTTGAGAAGTTACTTCGGATACAAGCATGAGTTTCTGGGCATCGTTGCAGTTGTGATTGTTGCGTTTTCATTGCTGTTTGGCTTCATCTTTGCCTATGCAATTAGATCATTTAATTTCCAAAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1412

Amino Acids

158.88

Weight (kDa)

8.51

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1092, 1955
AccB1I GGYRCC 1 cut(s) 3626
AccB7I CCANNNNNTGG 3 cut(s) 491, 2981, 3424
AccI GTMKAC 1 cut(s) 3780
AccII CGCG 2 cut(s) 25, 1150
AccIII TCCGGA 1 cut(s) 1195
AciI CCGC 8 cut(s) 241, 556, 788, 1148, 1971, 2492, 3261, 3699
AclI AACGTT 2 cut(s) 2687, 3500
AcoI YGGCCR 2 cut(s) 519, 3648
AcsI RAATTY 7 cut(s) 393, 544, 587, 1015, 2069, 2148, 2302
AcuI CTGAAG 5 cut(s) 51, 800, 2156, 2546, 3240
AcyI GRCGYC 1 cut(s) 1874
AfiI CCNNNNNNNGG 9 cut(s) 491, 1908, 2230, 2981, 3365, 3424, 3955, 3978, 4026
AflIII ACRYGT 3 cut(s) 88, 363, 708
AgeI ACCGGT 2 cut(s) 946, 2891
AhdI GACNNNNNGTC 1 cut(s) 851
AjiI CACGTC 1 cut(s) 1268
AjnI CCWGG 5 cut(s) 1715, 2551, 2881, 3236, 4025
AloI GAACNNNNNNTCC 2 cut(s) 3951, 3983
Alw21I GWGCWC 4 cut(s) 334, 1164, 2869, 2940
Alw26I GTCTC 9 cut(s) 653, 800, 1066, 1266, 1689, 2032, 2083, 2145, 4056
AlwNI CAGNNNCTG 1 cut(s) 1082
Ama87I CYCGRG 4 cut(s) 1163, 1986, 2255, 3955
Aor13HI TCCGGA 1 cut(s) 1195
AoxI GGCC 5 cut(s) 519, 1144, 2549, 2983, 3648
ApaI GGGCCC 1 cut(s) 1148
ApoI RAATTY 7 cut(s) 393, 544, 587, 1015, 2069, 2148, 2302
AsiGI ACCGGT 2 cut(s) 946, 2891
Asp700I GAANNNNTTC 2 cut(s) 3694, 3950
AspLEI GCGC 2 cut(s) 64, 2913
AspS9I GGNCC 6 cut(s) 479, 944, 1144, 1145, 3146, 4029
AsuC2I CCSGG 2 cut(s) 553, 3230
AsuHPI GGTGA 6 cut(s) 128, 202, 1243, 3140, 3406, 3838
AsuII TTCGAA 1 cut(s) 391
AvaI CYCGRG 4 cut(s) 1163, 1986, 2255, 3955
AvaII GGWCC 4 cut(s) 479, 944, 3146, 4029
AxyI CCTNAGG 1 cut(s) 2790
BaeGI GKGCMC 2 cut(s) 1148, 1267
BamHI GGATCC 2 cut(s) 1740, 1937
BanI GGYRCC 1 cut(s) 3626
BanII GRGCYC 3 cut(s) 1148, 2869, 2940
BarI GAAGNNNNNNTAC 6 cut(s) 576, 608, 1510, 1542, 3818, 3850
BbsI GAAGAC 3 cut(s) 12, 39, 532
Bbv12I GWGCWC 4 cut(s) 334, 1164, 2869, 2940
BceAI ACGGC 2 cut(s) 2017, 3635
BcgI CGANNNNNNTGC 4 cut(s) 1340, 1374, 2934, 2968
BciT130I CCWGG 5 cut(s) 1717, 2553, 2883, 3238, 4027
BciVI GTATCC 2 cut(s) 2699, 4118
BclI TGATCA 1 cut(s) 3174
BcnI CCSGG 2 cut(s) 553, 3230
BcoDI GTCTC 9 cut(s) 653, 800, 1066, 1266, 1689, 2032, 2083, 2145, 4056
BfaI CTAG 4 cut(s) 129, 678, 794, 2994
BfmI CTRYAG 4 cut(s) 1053, 2109, 2237, 3774
BfuI GTATCC 2 cut(s) 2699, 4118
BglII AGATCT 3 cut(s) 2349, 3376, 3565
BmcAI AGTACT 1 cut(s) 1259
Bme1390I CCNGG 7 cut(s) 553, 1717, 2553, 2883, 3230, 3238, 4027
Bme18I GGWCC 4 cut(s) 479, 944, 3146, 4029
BmeRI GACNNNNNGTC 1 cut(s) 851
BmeT110I CYCGRG 4 cut(s) 1163, 1986, 2255, 3955
BmgBI CACGTC 1 cut(s) 1268
BmgT120I GGNCC 6 cut(s) 479, 944, 1144, 1145, 3146, 4029
BmrFI CCNGG 7 cut(s) 553, 1717, 2553, 2883, 3230, 3238, 4027
BmrI ACTGGG 2 cut(s) 1270, 2032
BmuI ACTGGG 2 cut(s) 1270, 2032
BpiI GAAGAC 3 cut(s) 12, 39, 532
BplI GAGNNNNNCTC 2 cut(s) 1686, 1718
BpmI CTGGAG 3 cut(s) 1055, 3266, 4100
Bpu14I TTCGAA 1 cut(s) 391
BpuEI CTTGAG 3 cut(s) 218, 818, 1730
BpuMI CCSGG 2 cut(s) 553, 3230
Bsa29I ATCGAT 2 cut(s) 1541, 2954
BsaAI YACGTR 1 cut(s) 89
BsaBI GATNNNNATC 2 cut(s) 1754, 2819
BsaHI GRCGYC 1 cut(s) 1874
BsaI GGTCTC 4 cut(s) 800, 1066, 1689, 2032
BsaJI CCNNGG 6 cut(s) 1716, 1902, 2118, 3363, 3538, 3882
BsaWI WCCGGW 4 cut(s) 282, 946, 1195, 2891
BsaXI ACNNNNNCTCC 6 cut(s) 2856, 2886, 3762, 3792, 4080, 4110
Bsc4I CCNNNNNNNGG 9 cut(s) 491, 1908, 2230, 2981, 3365, 3424, 3955, 3978, 4026
Bse118I RCCGGY 5 cut(s) 946, 980, 2891, 3143, 3640
Bse1I ACTGG 6 cut(s) 1265, 1321, 2027, 2635, 3452, 4083
Bse21I CCTNAGG 1 cut(s) 2790
Bse3DI GCAATG 7 cut(s) 202, 3160, 3342, 3504, 3585, 3906, 4175
Bse8I GATNNNNATC 2 cut(s) 1754, 2819
BseAI TCCGGA 1 cut(s) 1195
BseBI CCWGG 5 cut(s) 1717, 2553, 2883, 3238, 4027
BseCI ATCGAT 2 cut(s) 1541, 2954
BseDI CCNNGG 6 cut(s) 1716, 1902, 2118, 3363, 3538, 3882
BseGI GGATG 9 cut(s) 585, 973, 1032, 1588, 1918, 2418, 2614, 3063, 3246
BseJI GATNNNNATC 2 cut(s) 1754, 2819
BseLI CCNNNNNNNGG 9 cut(s) 491, 1908, 2230, 2981, 3365, 3424, 3955, 3978, 4026
BseMI GCAATG 7 cut(s) 202, 3160, 3342, 3504, 3585, 3906, 4175
BseMII CTCAG 7 cut(s) 611, 1587, 2279, 2286, 2781, 2895, 3645
BseNI ACTGG 6 cut(s) 1265, 1321, 2027, 2635, 3452, 4083
BseRI GAGGAG 2 cut(s) 1058, 2210
BseSI GKGCMC 2 cut(s) 1148, 1267
BsgI GTGCAG 2 cut(s) 3498, 3656
Bsh1236I CGCG 2 cut(s) 25, 1150
BshFI GGCC 5 cut(s) 521, 1146, 2551, 2985, 3650
BshNI GGYRCC 1 cut(s) 3626
BshTI ACCGGT 2 cut(s) 946, 2891
BshVI ATCGAT 2 cut(s) 1541, 2954
BsiHKAI GWGCWC 4 cut(s) 334, 1164, 2869, 2940
BsiHKCI CYCGRG 4 cut(s) 1163, 1986, 2255, 3955
BslFI GGGAC 2 cut(s) 135, 465
BslI CCNNNNNNNGG 9 cut(s) 491, 1908, 2230, 2981, 3365, 3424, 3955, 3978, 4026
BsmAI GTCTC 9 cut(s) 653, 800, 1066, 1266, 1689, 2032, 2083, 2145, 4056
BsmBI CGTCTC 1 cut(s) 4056
BsmFI GGGAC 2 cut(s) 135, 465
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 5 cut(s) 521, 1146, 2551, 2985, 3650
Bso31I GGTCTC 4 cut(s) 800, 1066, 1689, 2032
BsoBI CYCGRG 4 cut(s) 1163, 1986, 2255, 3955
Bsp119I TTCGAA 1 cut(s) 391
Bsp120I GGGCCC 1 cut(s) 1144
Bsp1286I GDGCHC 6 cut(s) 334, 1148, 1164, 1267, 2869, 2940
Bsp13I TCCGGA 1 cut(s) 1195
Bsp19I CCATGG 1 cut(s) 3882
Bsp68I TCGCGA 1 cut(s) 25
BspACI CCGC 8 cut(s) 241, 556, 788, 1148, 1971, 2492, 3261, 3699
BspANI GGCC 5 cut(s) 521, 1146, 2551, 2985, 3650
BspCNI CTCAG 7 cut(s) 610, 1586, 2278, 2287, 2782, 2896, 3644
BspDI ATCGAT 2 cut(s) 1541, 2954
BspEI TCCGGA 1 cut(s) 1195
BspFNI CGCG 2 cut(s) 25, 1150
BspHI TCATGA 1 cut(s) 1470
BspMAI CTGCAG 2 cut(s) 1057, 2241
BspT104I TTCGAA 1 cut(s) 391
BspT107I GGYRCC 1 cut(s) 3626
BspTNI GGTCTC 4 cut(s) 800, 1066, 1689, 2032
BsrDI GCAATG 7 cut(s) 202, 3160, 3342, 3504, 3585, 3906, 4175
BsrFI RCCGGY 5 cut(s) 946, 980, 2891, 3143, 3640
BsrI ACTGG 6 cut(s) 1265, 1321, 2027, 2635, 3452, 4083
BssAI RCCGGY 5 cut(s) 946, 980, 2891, 3143, 3640
BssECI CCNNGG 6 cut(s) 1716, 1902, 2118, 3363, 3538, 3882
BssNAI GTATAC 1 cut(s) 3781
BssNI GRCGYC 1 cut(s) 1874
BssT1I CCWWGG 5 cut(s) 1902, 2118, 3363, 3538, 3882
Bst1107I GTATAC 1 cut(s) 3781
Bst2UI CCWGG 5 cut(s) 1717, 2553, 2883, 3238, 4027
Bst6I CTCTTC 8 cut(s) 91, 724, 965, 1469, 1709, 2359, 3575, 3956
BstACI GRCGYC 1 cut(s) 1874
BstAPI GCANNNNNTGC 1 cut(s) 376
BstBAI YACGTR 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 391
BstC8I GCNNGC 9 cut(s) 27, 1077, 1148, 1359, 1447, 1927, 2590, 2695, 3430
BstDSI CCRYGG 1 cut(s) 3882
BstENI CCTNNNNNAGG 1 cut(s) 1906
BstF5I GGATG 9 cut(s) 585, 973, 1032, 1588, 1918, 2418, 2614, 3063, 3246
BstFNI CGCG 2 cut(s) 25, 1150
BstHHI GCGC 2 cut(s) 64, 2913
BstMAI GTCTC 9 cut(s) 653, 800, 1066, 1266, 1689, 2032, 2083, 2145, 4056
BstMWI GCNNNNNNNGC 7 cut(s) 70, 376, 674, 2917, 2999, 3162, 3269
BstNI CCWGG 5 cut(s) 1717, 2553, 2883, 3238, 4027
BstNSI RCATGY 3 cut(s) 367, 712, 1449
BstSCI CCNGG 7 cut(s) 551, 1715, 2551, 2881, 3228, 3236, 4025
BstSFI CTRYAG 4 cut(s) 1053, 2109, 2237, 3774
BstSLI GKGCMC 2 cut(s) 1148, 1267
BstUI CGCG 2 cut(s) 25, 1150
BstV2I GAAGAC 3 cut(s) 12, 39, 532
BstX2I RGATCY 6 cut(s) 1740, 1749, 1937, 2349, 3376, 3565
BstXI CCANNNNNNTGG 2 cut(s) 2007, 2605
BstYI RGATCY 6 cut(s) 1740, 1749, 1937, 2349, 3376, 3565
BstZ17I GTATAC 1 cut(s) 3781
Bsu15I ATCGAT 2 cut(s) 1541, 2954
Bsu36I CCTNAGG 1 cut(s) 2790
BsuI GTATCC 2 cut(s) 2699, 4118
BsuRI GGCC 5 cut(s) 521, 1146, 2551, 2985, 3650
BsuTUI ATCGAT 2 cut(s) 1541, 2954
BtgI CCRYGG 1 cut(s) 3882
BtgZI GCGATG 1 cut(s) 1643
BtrI CACGTC 1 cut(s) 1268
BtsCI GGATG 9 cut(s) 585, 973, 1032, 1588, 1918, 2418, 2614, 3063, 3246
BtsI GCAGTG 3 cut(s) 332, 1062, 1946
BtuMI TCGCGA 1 cut(s) 25
Cac8I GCNNGC 9 cut(s) 27, 1077, 1148, 1359, 1447, 1927, 2590, 2695, 3430
CaiI CAGNNNCTG 1 cut(s) 1082
CciI TCATGA 1 cut(s) 1470
CfoI GCGC 2 cut(s) 64, 2913
Cfr10I RCCGGY 5 cut(s) 946, 980, 2891, 3143, 3640
Cfr13I GGNCC 6 cut(s) 479, 944, 1144, 1145, 3146, 4029
ClaI ATCGAT 2 cut(s) 1541, 2954
CseI GACGC 2 cut(s) 281, 1863
CsiI ACCWGGT 1 cut(s) 2881
CspAI ACCGGT 2 cut(s) 946, 2891
DraI TTTAAA 1 cut(s) 543
DriI GACNNNNNGTC 1 cut(s) 851
EaeI YGGCCR 2 cut(s) 519, 3648
Eam1104I CTCTTC 8 cut(s) 91, 724, 965, 1469, 1709, 2359, 3575, 3956
Eam1105I GACNNNNNGTC 1 cut(s) 851
EarI CTCTTC 8 cut(s) 91, 724, 965, 1469, 1709, 2359, 3575, 3956
EciI GGCGGA 2 cut(s) 571, 1986
Ecl136II GAGCTC 2 cut(s) 2867, 2938
Eco130I CCWWGG 5 cut(s) 1902, 2118, 3363, 3538, 3882
Eco24I GRGCYC 3 cut(s) 1148, 2869, 2940
Eco31I GGTCTC 4 cut(s) 800, 1066, 1689, 2032
Eco32I GATATC 1 cut(s) 2725
Eco47I GGWCC 4 cut(s) 479, 944, 3146, 4029
Eco53kI GAGCTC 2 cut(s) 2867, 2938
Eco57I CTGAAG 5 cut(s) 51, 800, 2156, 2546, 3240
Eco81I CCTNAGG 1 cut(s) 2790
Eco88I CYCGRG 4 cut(s) 1163, 1986, 2255, 3955
EcoICRI GAGCTC 2 cut(s) 2867, 2938
EcoNI CCTNNNNNAGG 1 cut(s) 1906
EcoO109I RGGNCCY 2 cut(s) 479, 1144
EcoRII CCWGG 5 cut(s) 1715, 2551, 2881, 3236, 4025
EcoRV GATATC 1 cut(s) 2725
EcoT14I CCWWGG 5 cut(s) 1902, 2118, 3363, 3538, 3882
EcoT22I ATGCAT 2 cut(s) 1566, 3301
EcoT38I GRGCYC 3 cut(s) 1148, 2869, 2940
ErhI CCWWGG 5 cut(s) 1902, 2118, 3363, 3538, 3882
Esp3I CGTCTC 1 cut(s) 4056
FalI AAGNNNNNCTT 2 cut(s) 2527, 2559
FaqI GGGAC 2 cut(s) 135, 465
FauI CCCGC 1 cut(s) 1155
FauNDI CATATG 2 cut(s) 1190, 1819
FbaI TGATCA 1 cut(s) 3174
FblI GTMKAC 1 cut(s) 3780
FokI GGATG 9 cut(s) 592, 980, 1019, 1595, 1925, 2425, 2621, 3050, 3253
FriOI GRGCYC 3 cut(s) 1148, 2869, 2940
FspBI CTAG 4 cut(s) 129, 678, 794, 2994
GlaI GCGC 2 cut(s) 63, 2912
GsuI CTGGAG 3 cut(s) 1055, 3266, 4100
HaeIII GGCC 5 cut(s) 521, 1146, 2551, 2985, 3650
HgaI GACGC 2 cut(s) 281, 1863
HhaI GCGC 2 cut(s) 64, 2913
Hin1I GRCGYC 1 cut(s) 1874
Hin6I GCGC 2 cut(s) 62, 2911
HinP1I GCGC 2 cut(s) 62, 2911
HincII GTYRAC 2 cut(s) 1423, 3286
HindII GTYRAC 2 cut(s) 1423, 3286
HindIII AAGCTT 1 cut(s) 1314
HpaI GTTAAC 2 cut(s) 1423, 3286
HphI GGTGA 6 cut(s) 128, 202, 1243, 3140, 3406, 3838
Hpy166II GTNNAC 8 cut(s) 86, 1423, 1594, 2636, 3037, 3286, 3495, 3781
Hpy8I GTNNAC 8 cut(s) 86, 1423, 1594, 2636, 3037, 3286, 3495, 3781
Hpy99I CGWCG 2 cut(s) 1272, 1355
HpyCH4IV ACGT 8 cut(s) 88, 341, 503, 1267, 1494, 2687, 3500, 4065
HpyF10VI GCNNNNNNNGC 7 cut(s) 70, 376, 674, 2917, 2999, 3162, 3269
HpySE526I ACGT 8 cut(s) 88, 341, 503, 1267, 1494, 2687, 3500, 4065
Hsp92I GRCGYC 1 cut(s) 1874
HspAI GCGC 2 cut(s) 62, 2911
Kpn2I TCCGGA 1 cut(s) 1195
Ksp22I TGATCA 1 cut(s) 3174
KspAI GTTAAC 2 cut(s) 1423, 3286
LmnI GCTCC 7 cut(s) 1601, 2781, 2845, 2864, 3161, 3170, 3770
MabI ACCWGGT 1 cut(s) 2881
MaeI CTAG 4 cut(s) 129, 678, 794, 2994
MaeII ACGT 8 cut(s) 88, 341, 503, 1267, 1494, 2687, 3500, 4065
MfeI CAATTG 2 cut(s) 273, 1332
MflI RGATCY 6 cut(s) 1740, 1749, 1937, 2349, 3376, 3565
MhlI GDGCHC 6 cut(s) 334, 1148, 1164, 1267, 2869, 2940
MlyI GAGTC 6 cut(s) 460, 927, 1565, 2565, 2586, 4091
MmeI TCCRAC 6 cut(s) 73, 141, 159, 673, 922, 2066
Mph1103I ATGCAT 2 cut(s) 1566, 3301
MroI TCCGGA 1 cut(s) 1195
MroXI GAANNNNTTC 2 cut(s) 3694, 3950
MslI CAYNNNNRTG 3 cut(s) 713, 2471, 2603
MspA1I CMGCKG 2 cut(s) 788, 3686
MspR9I CCNGG 7 cut(s) 553, 1717, 2553, 2883, 3230, 3238, 4027
MunI CAATTG 2 cut(s) 273, 1332
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 5 cut(s) 1717, 2553, 2883, 3238, 4027
MvnI CGCG 2 cut(s) 25, 1150
MwoI GCNNNNNNNGC 7 cut(s) 70, 376, 674, 2917, 2999, 3162, 3269
NciI CCSGG 2 cut(s) 553, 3230
NcoI CCATGG 1 cut(s) 3882
NdeI CATATG 2 cut(s) 1190, 1819
NmeAIII GCCGAG 2 cut(s) 653, 1326
NmuCI GTSAC 3 cut(s) 919, 1231, 2740
NruI TCGCGA 1 cut(s) 25
NsiI ATGCAT 2 cut(s) 1566, 3301
NspI RCATGY 3 cut(s) 367, 712, 1449
NspV TTCGAA 1 cut(s) 391
PaeI GCATGC 1 cut(s) 1449
PaeR7I CTCGAG 2 cut(s) 1163, 1986
PagI TCATGA 1 cut(s) 1470
PciI ACATGT 2 cut(s) 363, 708
PcsI WCGNNNNNNNCGW 2 cut(s) 3400, 3983
PctI GAATGC 1 cut(s) 381
PdmI GAANNNNTTC 2 cut(s) 3694, 3950
PflMI CCANNNNNTGG 3 cut(s) 491, 2981, 3424
PinAI ACCGGT 2 cut(s) 946, 2891
PleI GAGTC 6 cut(s) 460, 926, 1565, 2564, 2585, 4090
PpsI GAGTC 6 cut(s) 460, 926, 1565, 2564, 2585, 4090
Ppu21I YACGTR 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 479
PscI ACATGT 2 cut(s) 363, 708
PsiI TTATAA 2 cut(s) 1092, 1955
Psp124BI GAGCTC 2 cut(s) 2869, 2940
Psp1406I AACGTT 2 cut(s) 2687, 3500
Psp5II RGGWCCY 1 cut(s) 479
Psp6I CCWGG 5 cut(s) 1715, 2551, 2881, 3236, 4025
PspGI CCWGG 5 cut(s) 1715, 2551, 2881, 3236, 4025
PspOMI GGGCCC 1 cut(s) 1144
PspPI GGNCC 6 cut(s) 479, 944, 1144, 1145, 3146, 4029
PspPPI RGGWCCY 1 cut(s) 479
PspXI VCTCGAGB 1 cut(s) 1163
PstI CTGCAG 2 cut(s) 1057, 2241
PstNI CAGNNNCTG 1 cut(s) 1082
PsuI RGATCY 6 cut(s) 1740, 1749, 1937, 2349, 3376, 3565
PvuII CAGCTG 1 cut(s) 3686
RruI TCGCGA 1 cut(s) 25
RseI CAYNNNNRTG 3 cut(s) 713, 2471, 2603
SacI GAGCTC 2 cut(s) 2869, 2940
Sau96I GGNCC 6 cut(s) 479, 944, 1144, 1145, 3146, 4029
ScaI AGTACT 1 cut(s) 1259
SchI GAGTC 6 cut(s) 460, 927, 1565, 2565, 2586, 4091
ScrFI CCNGG 7 cut(s) 553, 1717, 2553, 2883, 3230, 3238, 4027
SduI GDGCHC 6 cut(s) 334, 1148, 1164, 1267, 2869, 2940
SexAI ACCWGGT 1 cut(s) 2881
SfcI CTRYAG 4 cut(s) 1053, 2109, 2237, 3774
Sfr274I CTCGAG 2 cut(s) 1163, 1986
SfuI TTCGAA 1 cut(s) 391
SinI GGWCC 4 cut(s) 479, 944, 3146, 4029
SlaI CTCGAG 2 cut(s) 1163, 1986
SmiI ATTTAAAT 1 cut(s) 543
SmiMI CAYNNNNRTG 3 cut(s) 713, 2471, 2603
SmlI CTYRAG 5 cut(s) 233, 833, 1163, 1745, 1986
SmoI CTYRAG 5 cut(s) 233, 833, 1163, 1745, 1986
SphI GCATGC 1 cut(s) 1449
SsiI CCGC 8 cut(s) 241, 556, 788, 1148, 1971, 2492, 3261, 3699
SspMI CTAG 4 cut(s) 129, 678, 794, 2994
SstI GAGCTC 2 cut(s) 2869, 2940
StyD4I CCNGG 7 cut(s) 551, 1715, 2551, 2881, 3228, 3236, 4025
StyI CCWWGG 5 cut(s) 1902, 2118, 3363, 3538, 3882
SwaI ATTTAAAT 1 cut(s) 543
TaiI ACGT 8 cut(s) 91, 344, 506, 1270, 1497, 2690, 3503, 4068
TatI WGTACW 5 cut(s) 1257, 1842, 1849, 3840, 3855
TauI GCSGC 2 cut(s) 791, 3263
TseFI GTSAC 3 cut(s) 919, 1231, 2740
Tsp45I GTSAC 3 cut(s) 919, 1231, 2740
TspGWI ACGGA 3 cut(s) 585, 1653, 3783
Van91I CCANNNNNTGG 3 cut(s) 491, 2981, 3424
VpaK11BI GGWCC 4 cut(s) 479, 944, 3146, 4029
XagI CCTNNNNNAGG 1 cut(s) 1906
XapI RAATTY 7 cut(s) 393, 544, 587, 1015, 2069, 2148, 2302
XbaI TCTAGA 1 cut(s) 793
XceI RCATGY 3 cut(s) 367, 712, 1449
XcmI CCANNNNNNNNNTGG 4 cut(s) 508, 1043, 1874, 2287
XhoI CTCGAG 2 cut(s) 1163, 1986
XmiI GTMKAC 1 cut(s) 3780
XmnI GAANNNNTTC 2 cut(s) 3694, 3950
XspI CTAG 4 cut(s) 129, 678, 794, 2994
ZrmI AGTACT 1 cut(s) 1259
Zsp2I ATGCAT 2 cut(s) 1566, 3301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.