Rorug07G0066000
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000493
Physical Location & Seq
Reverse (-)
5014224 .. 5015249
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0066000.1

Sequence Viewer

Length: 453 bp
ATGGAGCAGAGATCAAGAAAACGGAGGGAGAAAGATGGCGACGAGGAAATGGACAAGAGCGGAGGAGGAGGAGGGAGGAGGAAGAAGACAGCGCAGCAGGTGATCAAGGCCGACAAGGAAGAAGCGGTGGCGGCGACGGAGGAGGAGGTGGAGGAATTCTACGCCATAGTGAGGAGGATGCAGGCGGCGGTTAAGTACTTCGAGAAAGGTAATAACAACAATATTCACGCCAATATCAACAATGGCGGGGATCTGGTGCGGTGGAGAGTGGCGCTGGAGTCTACTCCGCCGGTGATTCCCGTCGCCGATGATGATGATGATGTTGCTGACGATCATGTAAAGAGTGCGACTTCCGATGATCATCGTGAGCAGTTGGTTGTTCAACTAGCTGACAATAATGGAGTTCTGGACTTGAACGAGGCGCCGGGTGAGGAGGCGGAGACTACTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

150

Amino Acids

16.63

Weight (kDa)

4.66

Isoelectric Point (pI)

60.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 88
Acc36I ACCTGC 1 cut(s) 88
AccB1I GGYRCC 1 cut(s) 421
AccBSI CCGCTC 1 cut(s) 60
AccI GTMKAC 1 cut(s) 281
AciI CCGC 9 cut(s) 60, 125, 131, 185, 188, 246, 259, 287, 437
AclWI GGATC 1 cut(s) 258
AcsI RAATTY 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 2 cut(s) 383, 415
AluBI AGCT 1 cut(s) 389
AluI AGCT 1 cut(s) 389
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 1 cut(s) 258
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 155
AspLEI GCGC 3 cut(s) 94, 274, 424
AsuC2I CCSGG 1 cut(s) 426
AsuHPI GGTGA 3 cut(s) 112, 304, 440
BanI GGYRCC 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 29
BclI TGATCA 2 cut(s) 102, 358
BcnI CCSGG 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 434
BfaI CTAG 1 cut(s) 386
BfoI RGCGCY 2 cut(s) 275, 425
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 3 cut(s) 95, 132, 186
BlsI GCNGC 3 cut(s) 96, 133, 187
BmcAI AGTACT 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 426
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 426
BsaAI YACGTR 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 422
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse118I RCCGGY 1 cut(s) 289
Bse8I GATNNNNATC 1 cut(s) 360
BseGI GGATG 1 cut(s) 183
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 171
BseRI GAGGAG 8 cut(s) 78, 81, 84, 91, 155, 158, 187, 446
BseXI GCAGC 1 cut(s) 106
BshFI GGCC 1 cut(s) 110
BshNI GGYRCC 1 cut(s) 421
BsiSI CCGG 2 cut(s) 290, 425
BslI CCNNNNNNNGG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 434
BsnI GGCC 1 cut(s) 110
Bsp143I GATC 5 cut(s) 11, 102, 250, 331, 358
BspACI CCGC 9 cut(s) 60, 125, 131, 185, 188, 246, 259, 287, 437
BspANI GGCC 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 421
BsrBI CCGCTC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 289
BssAI RCCGGY 1 cut(s) 289
BssMI GATC 5 cut(s) 11, 102, 250, 331, 358
BssNI GRCGYC 1 cut(s) 422
BstACI GRCGYC 1 cut(s) 422
BstBAI YACGTR 1 cut(s) 450
BstC8I GCNNGC 1 cut(s) 183
BstF5I GGATG 1 cut(s) 183
BstH2I RGCGCY 2 cut(s) 275, 425
BstHHI GCGC 3 cut(s) 94, 274, 424
BstKTI GATC 5 cut(s) 14, 105, 253, 334, 361
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 5 cut(s) 11, 102, 250, 331, 358
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 424
BstSNI TACGTA 1 cut(s) 450
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 183
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 183
CfoI GCGC 3 cut(s) 94, 274, 424
Cfr10I RCCGGY 1 cut(s) 289
Csp6I GTAC 1 cut(s) 196
CviAII CATG 1 cut(s) 335
CviJI RGCY 2 cut(s) 110, 389
CviKI_1 RGCY 2 cut(s) 110, 389
CviQI GTAC 1 cut(s) 196
DinI GGCGCC 1 cut(s) 423
DpnI GATC 5 cut(s) 13, 104, 252, 333, 360
DpnII GATC 5 cut(s) 11, 102, 250, 331, 358
EciI GGCGGA 2 cut(s) 276, 452
Eco105I TACGTA 1 cut(s) 450
EcoRI GAATTC 1 cut(s) 155
EgeI GGCGCC 1 cut(s) 423
EheI GGCGCC 1 cut(s) 423
FaeI CATG 1 cut(s) 338
FaiI YATR 2 cut(s) 167, 336
FatI CATG 1 cut(s) 334
FauI CCCGC 1 cut(s) 239
FbaI TGATCA 2 cut(s) 102, 358
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 3 cut(s) 95, 132, 186
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 3 cut(s) 95, 132, 186
FspBI CTAG 1 cut(s) 386
GlaI GCGC 3 cut(s) 93, 273, 423
GluI GCNGC 3 cut(s) 95, 132, 186
GsuI CTGGAG 1 cut(s) 296
HaeII RGCGCY 2 cut(s) 275, 425
HaeIII GGCC 1 cut(s) 110
HapII CCGG 2 cut(s) 290, 425
HhaI GCGC 3 cut(s) 94, 274, 424
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 1 cut(s) 338
Hin6I GCGC 3 cut(s) 92, 272, 422
HinP1I GCGC 3 cut(s) 92, 272, 422
HinfI GANTC 2 cut(s) 278, 295
HpaII CCGG 2 cut(s) 290, 425
HphI GGTGA 3 cut(s) 112, 304, 440
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 4 cut(s) 15, 202, 365, 407
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 3 cut(s) 44, 139, 305
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 449
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 1 cut(s) 338
HspAI GCGC 3 cut(s) 92, 272, 422
KasI GGCGCC 1 cut(s) 421
Ksp22I TGATCA 2 cut(s) 102, 358
Kzo9I GATC 5 cut(s) 11, 102, 250, 331, 358
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 7 cut(s) 83, 167, 239, 260, 303, 392, 438
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 386
MaeII ACGT 1 cut(s) 449
MalI GATC 5 cut(s) 13, 104, 252, 333, 360
MbiI CCGCTC 1 cut(s) 60
MboI GATC 5 cut(s) 11, 102, 250, 331, 358
MboII GAAGA 3 cut(s) 94, 97, 131
MflI RGATCY 1 cut(s) 250
MluCI AATT 1 cut(s) 155
Mly113I GGCGCC 1 cut(s) 422
MlyI GAGTC 1 cut(s) 287
MseI TTAA 1 cut(s) 192
MspI CCGG 2 cut(s) 290, 425
MspR9I CCNGG 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 131
NarI GGCGCC 1 cut(s) 422
NciI CCSGG 1 cut(s) 426
NdeII GATC 5 cut(s) 11, 102, 250, 331, 358
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 423
PaqCI CACCTGC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 3 cut(s) 96, 133, 187
PleI GAGTC 1 cut(s) 286
PluTI GGCGCC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 450
PspN4I GGNNCC 1 cut(s) 423
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 3 cut(s) 95, 132, 186
Sau3AI GATC 5 cut(s) 11, 102, 250, 331, 358
ScaI AGTACT 1 cut(s) 197
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 426
SetI ASST 5 cut(s) 102, 150, 211, 391, 452
SfaNI GCATC 1 cut(s) 168
SfoI GGCGCC 1 cut(s) 423
SgrAI CRCCGGYG 1 cut(s) 289
SnaBI TACGTA 1 cut(s) 450
Sse9I AATT 1 cut(s) 155
SsiI CCGC 9 cut(s) 60, 125, 131, 185, 188, 246, 259, 287, 437
SspDI GGCGCC 1 cut(s) 421
SspI AATATT 1 cut(s) 223
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 424
TaiI ACGT 1 cut(s) 452
TaqI TCGA 1 cut(s) 201
TasI AATT 1 cut(s) 155
TatI WGTACW 1 cut(s) 195
TauI GCSGC 2 cut(s) 134, 188
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseI GCWGC 1 cut(s) 94
TspGWI ACGGA 2 cut(s) 37, 152
XapI RAATTY 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 1 cut(s) 386
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.