Rmu_ssc0000397.1_g000036
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000397.1
OG0000493
Physical Location & Seq
Forward (+)
145244 .. 152178
6935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000397.1_g000036.1.cds

Sequence Viewer

Length: 4200 bp
atggaagttttctccaagtcttctcgtgaagaagacgatgaagaagctctgaaatgggctgctattgagagattgccaacttacttgcgcataaggagaggcatactcacggaccaagacgcgggtaaagccagagaaattgatgtaaaaaatttaggacttttagaaaggaggaatttgctggagaggctggtgaagattgcagatgaagataatgagaagttctcgttcaagctcagggaccgcatggatagagttggacttgaatttccaacaactgaggtgcggtttgaccatttaagtgtcgaagcagaagcttatgtagggagtagggcattacctacaatgctcaacttctccattaacatcttagaggggttgttgaattaccttcatgttcttccaagtagaaagaagcgattgccaatcctccacggtgttagtggaattatcaagccaagaagaatgacactgcttttaggccctccaagctgtggaaagaccacattactactggctttggctggaaaactcgaggggatggaagagtttgtaccagagaggacatcagcatatattagtcaacatgatcttcacatacctgagatgacagtgagagaaactctggctttttcagcaagatgtcaaggagtcggaccacgttatgaaatgttggtagaattatcaaggagagaaaagactgcaaatataatgccagatcctgatcttgatgtttacatgaaggcagctgcactagaaggacaggaaaacaatgtaattacagattatatactcaaggttttggggcttgaagtttgtgctgacactatagtaggggatcaaatgagacgaggtatctctgggggacaaagaaagcgactcaccacaggggagatgctggttggaccagcaagagcactttttatggatgagatatccactggcttggacagttcaacaacatttcagatagtgaagtcacttagacaatccatccacattctcaatggaactgctgtcatctcactcctccagccagcgccagaaacttataatcttttcgatgatataattctactctcagatgggcacattgtgtatcaaggtccccgggacaatgtgcttgagttctttgagtacatgggctttaaatgtccagagagaaaaggagttgctgattttctacaagaagtaacctcagggaaagatcaagagcaatactgggctgataaagataagccttatagctttgtaacttccaagaactttgctgaagccttgcaatcattttacattggtcgagaacttggtgatgagctttctattccgtttgacaagtctaaaggtcatcctgcagctttaacaaccaagaagtatggcatcagcaagaaggaattattcaaagcttgtatgtctaggcaaattttgcttatgaagaggaattcatttatccacattttcaaaatttcacagatgattctattgtcttgtgtaacaataacattattcctacgaactgagatgcaccgagatactgttgaagatggtgggatatatatgggagcattgttttactcaatgatgataattatgttcaatgggttctcagagcttgctatgactgtcatgaagcttcctgtgtttttcaagcaaagggaccttctcttctatcctgcttgggcgtactctttgcccgcatggctgataaggatccccatgacttttgtggaagtttccatttgggtgaccattgcgtactacactataggttttgatccaaacattgaaaggttcttcaaacagttcctttcactgctgtttattagccaaatggcaactggactgttccgactgataggggcattaggaagaaacatgattgttgcgaacacatttggatcggttgctttgcttgtgctgtttgttcttggtggattccttttatcacgagaggatatgaaaagctggttggtgtggggatattatctgtcaccaatgtcgtatggactgaatgccctggctgtcaatgaatttcttggaaaaagttggagacatgtttctaccaactcaaaagaaccattaggaataatggtcttgaattctagaggggtgttcccagaagcacgttggtactggattggagtagtagctttatttggatttattcttctattcaacttccttttcattttggcacttcagtatcttgaacctcttgataagcctcaggcagtactttccaaagaggccttggcaaagaaacaagccactgaaactggagaggccattgaattattgtcaacaggaaagagctatattggtgcagctaatgaaagactagacaatgtgtcagtcaatcttactggccagcgaggaatggttcttccttttgaacccctcacaattacatttgatgaaatcagatatgcagttgacatgccacaggaaatgaaagctcaaggcataacagagaatcggttagaacttctgaagggtgtaagtggtgcttttaggcctggagtcctaacagctctaatgggggtcagtggcgctggaaagactactctaatggatgtcttggcaggaaggaaaactggtggacatattgaaggaaacattaaaatttctggctatccaaagaagcaagaaacatttgctcgtatatctggatattgtgagcaaacagatatacactctccacatgttacagtctatgaatctttggtttattctgcttggctccggttgccccctgaggttgattcccccaccagaaagatgtttattgaggaagtcaaggaacttgtggaactgaccccaatgagagatgcacttgttggattgcctggagtgaatggactctcaactgagcagcgcaaaagactaacaatcgcagtagagcttgttgccaacccatccataatatttatggatgagccaacctctggtcttgatgccagggctgcagcaattgtaatgagaactgtgaggaatacagtgaacaccgggagaactgtagtctgcaccatccaccagccaagcattgatatatttgatgcttttgatgagatgctacttttgaaatgcggaggagaagaaatatatgttggtcctttaggccaccagtcctctcagttgatcgaatactttgaggggatcaggggagttcctaaaatgaatgatggttacaatcctgcaacttggatgttagaggttacttctgcagcacaagaatcaactcttggggtcaatttcactgacatatacaagaactcagaaatgtacaggagaaacaaggaattgatcaaggaactaagtactccaccagaaaattcagtagaattgcacttcacaacacagtattctcagtccttctttacccaatgcataacttgcctatggaaacaacatctgtcttactggagaaacccgccatacagtgcagcgagacttatttacacaactatgatggctatagtatttgggatattattctggggtcttggctccaaaaggcaaaagaaacaagatcttttcaatgtattaggctctatgtatgctgccgtagtcttcattgggatacaaaatgcctcatcagtgcagccagttatagcgattgagagggtagtcttttacagagaaagggcagctggaatgtactctgcttttccatatgcatttggacaggttgtcattgagataccatacactttgatccaaaccacattatatgtggttatagtatacaccatgatcggatatgattggacggtcagcaagttcgtctggtattttttcttcatgtatttcagcttcttatactacacattatatggtatgatgattgtggccattactcccaacactatggttgctgctgtgctttcctcatccttctacccgttatggaacgtcttttctggatttatcattcccaaaacaagaattccaatatggtggagatggttctattggttgtgcccgatttcttggaccttatacggattgattgcttcgcagtttggagacattaaggacgcacttgaatctggcaaaactgtggagaattttattagtgattattttgggtataaaaaagactttttaggtgtagttgcaattgtgcatgttgggattacagtgctctttggtttcatctttgccttttcaatcaaagcgtttaatttccaaaggagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1399

Amino Acids

158.53

Weight (kDa)

7.27

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1053
Acc16I TGCGCA 1 cut(s) 89
AccB7I CCANNNNNTGG 2 cut(s) 494, 2945
AccI GTMKAC 1 cut(s) 3744
AccII CGCG 1 cut(s) 122
AciI CCGC 6 cut(s) 122, 244, 286, 1695, 3087, 3431
AclWI GGATC 8 cut(s) 713, 846, 1705, 1718, 1769, 1906, 3164, 3709
AcoI YGGCCR 2 cut(s) 2365, 3849
AcuI CTGAAG 3 cut(s) 1293, 2183, 2510
AdeI CACNNNGTG 1 cut(s) 1096
AfaI GTAC 9 cut(s) 555, 1139, 1685, 1757, 2132, 2235, 3284, 3319, 3659
AfiI CCNNNNNNNGG 3 cut(s) 121, 494, 2945
AflIII ACRYGT 2 cut(s) 2053, 2701
AhdI GACNNNNNGTC 2 cut(s) 2347, 3689
AjnI CCWGG 4 cut(s) 2016, 2515, 2845, 2957
AjuI GAANNNNNNNTTGG 6 cut(s) 1952, 1984, 3090, 3122, 3225, 3257
Alw21I GWGCWC 2 cut(s) 919, 4146
Alw26I GTCTC 4 cut(s) 841, 2044, 3442, 4020
AlwI GGATC 8 cut(s) 713, 846, 1705, 1718, 1769, 1906, 3164, 3709
AlwNI CAGNNNCTG 1 cut(s) 722
Ama87I CYCGRG 2 cut(s) 533, 1110
AoxI GGCC 7 cut(s) 481, 2247, 2283, 2365, 2513, 3118, 3849
AspLEI GCGC 4 cut(s) 90, 1042, 2552, 2877
AspS9I GGNCC 9 cut(s) 112, 241, 482, 656, 905, 1106, 1657, 3110, 3993
AsuC2I CCSGG 3 cut(s) 1111, 1112, 3007
AsuHPI GGTGA 5 cut(s) 205, 874, 1322, 1756, 1983
AvaI CYCGRG 2 cut(s) 533, 1110
AvaII GGWCC 8 cut(s) 112, 241, 656, 905, 1106, 1657, 3110, 3993
AxyI CCTNAGG 3 cut(s) 1198, 2226, 2754
BaeGI GKGCMC 2 cut(s) 1092, 3983
BaeI ACNNNNGTAYC 2 cut(s) 2186, 2219
BalI TGGCCA 2 cut(s) 2367, 3851
BamHI GGATCC 1 cut(s) 1710
BarI GAAGNNNNNNTAC 6 cut(s) 537, 569, 3782, 3797, 3814, 3829
BauI CACGAG 2 cut(s) 24, 1947
BbsI GAAGAC 3 cut(s) 12, 39, 3562
Bbv12I GWGCWC 2 cut(s) 919, 4146
BccI CCATC 9 cut(s) 535, 1001, 1079, 1538, 2923, 3035, 3176, 3463, 3957
BceAI ACGGC 1 cut(s) 3548
BciT130I CCWGG 4 cut(s) 2018, 2517, 2847, 2959
BciVI GTATCC 1 cut(s) 3573
BclI TGATCA 1 cut(s) 3303
BcnI CCSGG 3 cut(s) 1111, 1112, 3007
BcoDI GTCTC 4 cut(s) 841, 2044, 3442, 4020
BfaI CTAG 4 cut(s) 755, 1416, 2103, 2339
BfmI CTRYAG 7 cut(s) 828, 1353, 1764, 2964, 3015, 3222, 3474
BfoI RGCGCY 2 cut(s) 1043, 2553
BfuI GTATCC 1 cut(s) 3573
BglI GCCNNNNNGGC 1 cut(s) 1699
BglII AGATCT 1 cut(s) 3529
BmcAI AGTACT 2 cut(s) 2235, 3319
Bme1390I CCNGG 7 cut(s) 1111, 1112, 2018, 2517, 2847, 2959, 3007
Bme18I GGWCC 8 cut(s) 112, 241, 656, 905, 1106, 1657, 3110, 3993
BmeRI GACNNNNNGTC 2 cut(s) 2347, 3689
BmeT110I CYCGRG 2 cut(s) 533, 1110
BmgT120I GGNCC 9 cut(s) 112, 241, 482, 656, 905, 1106, 1657, 3110, 3993
BmiI GGNNCC 6 cut(s) 242, 1108, 1658, 1712, 2741, 3508
BmrFI CCNGG 7 cut(s) 1111, 1112, 2018, 2517, 2847, 2959, 3007
BmrI ACTGGG 1 cut(s) 1231
BmsI GCATC 7 cut(s) 885, 1389, 1512, 2818, 2944, 3046, 3060
BmuI ACTGGG 1 cut(s) 1231
BpiI GAAGAC 3 cut(s) 12, 39, 3562
BplI GAGNNNNNCTC 8 cut(s) 90, 122, 209, 241, 607, 639, 2927, 2959
BpmI CTGGAG 6 cut(s) 203, 1016, 2298, 2538, 2868, 3442
Bpu10I CCTNAGC 1 cut(s) 236
BpuEI CTTGAG 3 cut(s) 779, 1145, 2442
BpuMI CCSGG 3 cut(s) 1111, 1112, 3007
BsaBI GATNNNNATC 2 cut(s) 723, 1709
BsaJI CCNNGG 6 cut(s) 433, 1109, 1110, 2016, 2250, 2958
BsaWI WCCGGW 1 cut(s) 2742
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 494, 2945
Bse21I CCTNAGG 3 cut(s) 1198, 2226, 2754
Bse3DI GCAATG 1 cut(s) 1749
Bse8I GATNNNNATC 2 cut(s) 723, 1709
BseBI CCWGG 4 cut(s) 2018, 2517, 2847, 2959
BseDI CCNNGG 6 cut(s) 433, 1109, 1110, 2016, 2250, 2958
BseJI GATNNNNATC 2 cut(s) 723, 1709
BseLI CCNNNNNNNGG 3 cut(s) 121, 494, 2945
BseMI GCAATG 1 cut(s) 1749
BseRI GAGGAG 2 cut(s) 1019, 3105
BseSI GKGCMC 2 cut(s) 1092, 3983
BsgI GTGCAG 5 cut(s) 735, 2343, 3007, 3462, 3620
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 7 cut(s) 483, 2249, 2285, 2367, 2515, 3120, 3851
BsiHKAI GWGCWC 2 cut(s) 919, 4146
BsiHKCI CYCGRG 2 cut(s) 533, 1110
BsiSI CCGG 3 cut(s) 1111, 2743, 3006
BslFI GGGAC 5 cut(s) 254, 879, 1092, 1127, 1670
BslI CCNNNNNNNGG 3 cut(s) 121, 494, 2945
BsmAI GTCTC 4 cut(s) 841, 2044, 3442, 4020
BsmBI CGTCTC 1 cut(s) 841
BsmFI GGGAC 5 cut(s) 254, 879, 1092, 1127, 1670
BsmI GAATGC 1 cut(s) 2017
BsnI GGCC 7 cut(s) 483, 2249, 2285, 2367, 2515, 3120, 3851
BsoBI CYCGRG 2 cut(s) 533, 1110
Bsp1286I GDGCHC 4 cut(s) 919, 1092, 3983, 4146
Bsp1407I TGTACA 1 cut(s) 3282
BspACI CCGC 6 cut(s) 122, 244, 286, 1695, 3087, 3431
BspANI GGCC 7 cut(s) 483, 2249, 2285, 2367, 2515, 3120, 3851
BspFNI CGCG 1 cut(s) 122
BspHI TCATGA 1 cut(s) 1626
BspLI GGNNCC 6 cut(s) 242, 1108, 1658, 1712, 2741, 3508
BspMAI CTGCAG 3 cut(s) 1357, 2968, 3226
BspPI GGATC 8 cut(s) 713, 846, 1705, 1718, 1769, 1906, 3164, 3709
BsrDI GCAATG 1 cut(s) 1749
BsrGI TGTACA 1 cut(s) 3282
BssECI CCNNGG 6 cut(s) 433, 1109, 1110, 2016, 2250, 2958
BssNAI GTATAC 1 cut(s) 3745
BssSI CACGAG 2 cut(s) 24, 1947
BssT1I CCWWGG 1 cut(s) 2250
Bst1107I GTATAC 1 cut(s) 3745
Bst2BI CACGAG 2 cut(s) 24, 1947
Bst2UI CCWGG 4 cut(s) 2018, 2517, 2847, 2959
Bst6I CTCTTC 3 cut(s) 540, 1430, 1670
BstAPI GCANNNNNTGC 2 cut(s) 1426, 3393
BstAUI TGTACA 1 cut(s) 3282
BstC8I GCNNGC 4 cut(s) 1038, 1614, 1695, 2369
BstDSI CCRYGG 1 cut(s) 433
BstEII GGTNACC 1 cut(s) 1744
BstFNI CGCG 1 cut(s) 122
BstH2I RGCGCY 2 cut(s) 1043, 2553
BstHHI GCGC 4 cut(s) 90, 1042, 2552, 2877
BstMAI GTCTC 4 cut(s) 841, 2044, 3442, 4020
BstMWI GCNNNNNNNGC 9 cut(s) 128, 187, 489, 635, 1426, 1699, 2746, 2963, 3393
BstNI CCWGG 4 cut(s) 2018, 2517, 2847, 2959
BstNSI RCATGY 4 cut(s) 2057, 2440, 2705, 4130
BstPI GGTNACC 1 cut(s) 1744
BstSCI CCNGG 7 cut(s) 1109, 1110, 2016, 2515, 2845, 2957, 3005
BstSFI CTRYAG 7 cut(s) 828, 1353, 1764, 2964, 3015, 3222, 3474
BstSLI GKGCMC 2 cut(s) 1092, 3983
BstUI CGCG 1 cut(s) 122
BstV2I GAAGAC 3 cut(s) 12, 39, 3562
BstX2I RGATCY 3 cut(s) 718, 1710, 3529
BstXI CCANNNNNNTGG 3 cut(s) 946, 3868, 3957
BstYI RGATCY 3 cut(s) 718, 1710, 3529
BstZ17I GTATAC 1 cut(s) 3745
Bsu36I CCTNAGG 3 cut(s) 1198, 2226, 2754
BsuI GTATCC 1 cut(s) 3573
BsuRI GGCC 7 cut(s) 483, 2249, 2285, 2367, 2515, 3120, 3851
BtgI CCRYGG 1 cut(s) 433
BtsI GCAGTG 2 cut(s) 470, 1811
Cac8I GCNNGC 4 cut(s) 1038, 1614, 1695, 2369
CaiI CAGNNNCTG 1 cut(s) 722
CciI TCATGA 1 cut(s) 1626
CfoI GCGC 4 cut(s) 90, 1042, 2552, 2877
Cfr13I GGNCC 9 cut(s) 112, 241, 482, 656, 905, 1106, 1657, 3110, 3993
Cfr9I CCCGGG 1 cut(s) 1110
CseI GACGC 2 cut(s) 128, 4046
Csp6I GTAC 9 cut(s) 554, 1138, 1684, 1756, 2131, 2234, 3283, 3318, 3658
CviQI GTAC 9 cut(s) 554, 1138, 1684, 1756, 2131, 2234, 3283, 3318, 3658
DraI TTTAAA 1 cut(s) 1150
DraIII CACNNNGTG 1 cut(s) 1096
DriI GACNNNNNGTC 2 cut(s) 2347, 3689
EaeI YGGCCR 2 cut(s) 2365, 3849
Eam1104I CTCTTC 3 cut(s) 540, 1430, 1670
Eam1105I GACNNNNNGTC 2 cut(s) 2347, 3689
EarI CTCTTC 3 cut(s) 540, 1430, 1670
Eco130I CCWWGG 1 cut(s) 2250
Eco147I AGGCCT 2 cut(s) 2249, 2515
Eco32I GATATC 1 cut(s) 936
Eco47I GGWCC 8 cut(s) 112, 241, 656, 905, 1106, 1657, 3110, 3993
Eco57I CTGAAG 3 cut(s) 1293, 2183, 2510
Eco81I CCTNAGG 3 cut(s) 1198, 2226, 2754
Eco88I CYCGRG 2 cut(s) 533, 1110
Eco91I GGTNACC 1 cut(s) 1744
EcoO109I RGGNCCY 3 cut(s) 482, 1106, 1657
EcoO65I GGTNACC 1 cut(s) 1744
EcoRI GAATTC 3 cut(s) 1441, 2098, 3945
EcoRII CCWGG 4 cut(s) 2016, 2515, 2845, 2957
EcoRV GATATC 1 cut(s) 936
EcoT14I CCWWGG 1 cut(s) 2250
EcoT22I ATGCAT 2 cut(s) 3389, 3679
ErhI CCWWGG 1 cut(s) 2250
Esp3I CGTCTC 1 cut(s) 841
FalI AAGNNNNNCTT 2 cut(s) 2491, 2523
FaqI GGGAC 5 cut(s) 254, 879, 1092, 1127, 1670
FauI CCCGC 3 cut(s) 115, 1702, 3438
FauNDI CATATG 1 cut(s) 3673
FbaI TGATCA 1 cut(s) 3303
FblI GTMKAC 1 cut(s) 3744
FspBI CTAG 4 cut(s) 755, 1416, 2103, 2339
FspI TGCGCA 1 cut(s) 89
GlaI GCGC 4 cut(s) 89, 1041, 2551, 2876
GsuI CTGGAG 6 cut(s) 203, 1016, 2298, 2538, 2868, 3442
HaeII RGCGCY 2 cut(s) 1043, 2553
HaeIII GGCC 7 cut(s) 483, 2249, 2285, 2367, 2515, 3120, 3851
HapII CCGG 3 cut(s) 1111, 2743, 3006
HgaI GACGC 2 cut(s) 128, 4046
HhaI GCGC 4 cut(s) 90, 1042, 2552, 2877
Hin6I GCGC 4 cut(s) 88, 1040, 2550, 2875
HinP1I GCGC 4 cut(s) 88, 1040, 2550, 2875
HincII GTYRAC 3 cut(s) 584, 2301, 2434
HindII GTYRAC 3 cut(s) 584, 2301, 2434
HindIII AAGCTT 3 cut(s) 315, 1404, 1631
HpaII CCGG 3 cut(s) 1111, 2743, 3006
HphI GGTGA 5 cut(s) 205, 874, 1322, 1756, 1983
Hpy166II GTNNAC 7 cut(s) 584, 736, 2301, 2434, 2600, 3001, 3745
Hpy8I GTNNAC 7 cut(s) 584, 736, 2301, 2434, 2600, 3001, 3745
HpyCH4IV ACGT 3 cut(s) 661, 2125, 3912
HpyF10VI GCNNNNNNNGC 9 cut(s) 128, 187, 489, 635, 1426, 1699, 2746, 2963, 3393
HpySE526I ACGT 3 cut(s) 661, 2125, 3912
HspAI GCGC 4 cut(s) 88, 1040, 2550, 2875
Ksp22I TGATCA 1 cut(s) 3303
LmnI GCTCC 3 cut(s) 1562, 2745, 3512
LweI GCATC 7 cut(s) 885, 1389, 1512, 2818, 2944, 3046, 3060
MaeI CTAG 4 cut(s) 755, 1416, 2103, 2339
MaeII ACGT 3 cut(s) 661, 2125, 3912
MaeIII GTNAC 9 cut(s) 978, 1192, 1252, 1492, 1744, 1989, 2704, 3185, 3214
MfeI CAATTG 2 cut(s) 2970, 4119
MflI RGATCY 3 cut(s) 718, 1710, 3529
MhlI GDGCHC 4 cut(s) 919, 1092, 3983, 4146
MlsI TGGCCA 2 cut(s) 2367, 3851
MluNI TGGCCA 2 cut(s) 2367, 3851
MlyI GAGTC 4 cut(s) 660, 873, 2529, 2853
MmeI TCCRAC 7 cut(s) 238, 296, 634, 883, 1873, 2027, 2818
Mox20I TGGCCA 2 cut(s) 2367, 3851
Mph1103I ATGCAT 2 cut(s) 3389, 3679
MscI TGGCCA 2 cut(s) 2367, 3851
MseI TTAA 7 cut(s) 299, 363, 1149, 1361, 2619, 4032, 4182
MslI CAYNNNNRTG 3 cut(s) 300, 1742, 3464
Msp20I TGGCCA 2 cut(s) 2367, 3851
MspA1I CMGCKG 2 cut(s) 749, 3650
MspI CCGG 3 cut(s) 1111, 2743, 3006
MspR9I CCNGG 7 cut(s) 1111, 1112, 2018, 2517, 2847, 2959, 3007
MunI CAATTG 2 cut(s) 2970, 4119
Mva1269I GAATGC 1 cut(s) 2017
MvaI CCWGG 4 cut(s) 2018, 2517, 2847, 2959
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 9 cut(s) 128, 187, 489, 635, 1426, 1699, 2746, 2963, 3393
NciI CCSGG 3 cut(s) 1111, 1112, 3007
NdeI CATATG 1 cut(s) 3673
NlaIV GGNNCC 6 cut(s) 242, 1108, 1658, 1712, 2741, 3508
NmuCI GTSAC 3 cut(s) 978, 1744, 1989
NsbI TGCGCA 1 cut(s) 89
NsiI ATGCAT 2 cut(s) 3389, 3679
NspI RCATGY 4 cut(s) 2057, 2440, 2705, 4130
PaeR7I CTCGAG 1 cut(s) 533
PagI TCATGA 1 cut(s) 1626
PceI AGGCCT 2 cut(s) 2249, 2515
PciI ACATGT 2 cut(s) 2053, 2701
PctI GAATGC 1 cut(s) 2017
PfeI GAWTC 7 cut(s) 1477, 1935, 2473, 2717, 2762, 3233, 4046
PflMI CCANNNNNTGG 2 cut(s) 494, 2945
PleI GAGTC 4 cut(s) 659, 873, 2528, 2853
PpsI GAGTC 4 cut(s) 659, 873, 2528, 2853
PpuMI RGGWCCY 2 cut(s) 1106, 1657
PscI ACATGT 2 cut(s) 2053, 2701
PsiI TTATAA 1 cut(s) 1053
Psp5II RGGWCCY 2 cut(s) 1106, 1657
Psp6I CCWGG 4 cut(s) 2016, 2515, 2845, 2957
PspEI GGTNACC 1 cut(s) 1744
PspGI CCWGG 4 cut(s) 2016, 2515, 2845, 2957
PspN4I GGNNCC 6 cut(s) 242, 1108, 1658, 1712, 2741, 3508
PspPI GGNCC 9 cut(s) 112, 241, 482, 656, 905, 1106, 1657, 3110, 3993
PspPPI RGGWCCY 2 cut(s) 1106, 1657
PspXI VCTCGAGB 1 cut(s) 533
PstI CTGCAG 3 cut(s) 1357, 2968, 3226
PstNI CAGNNNCTG 1 cut(s) 722
PsuI RGATCY 3 cut(s) 718, 1710, 3529
PvuII CAGCTG 2 cut(s) 749, 3650
RsaI GTAC 9 cut(s) 555, 1139, 1685, 1757, 2132, 2235, 3284, 3319, 3659
RsaNI GTAC 9 cut(s) 554, 1138, 1684, 1756, 2131, 2234, 3283, 3318, 3658
RseI CAYNNNNRTG 3 cut(s) 300, 1742, 3464
SaqAI TTAA 7 cut(s) 299, 363, 1149, 1361, 2619, 4032, 4182
Sau96I GGNCC 9 cut(s) 112, 241, 482, 656, 905, 1106, 1657, 3110, 3993
ScaI AGTACT 2 cut(s) 2235, 3319
SchI GAGTC 4 cut(s) 660, 873, 2529, 2853
ScrFI CCNGG 7 cut(s) 1111, 1112, 2018, 2517, 2847, 2959, 3007
SduI GDGCHC 4 cut(s) 919, 1092, 3983, 4146
SfaNI GCATC 7 cut(s) 885, 1389, 1512, 2818, 2944, 3046, 3060
SfcI CTRYAG 7 cut(s) 828, 1353, 1764, 2964, 3015, 3222, 3474
Sfr274I CTCGAG 1 cut(s) 533
SinI GGWCC 8 cut(s) 112, 241, 656, 905, 1106, 1657, 3110, 3993
SlaI CTCGAG 1 cut(s) 533
SmaI CCCGGG 1 cut(s) 1112
SmiMI CAYNNNNRTG 3 cut(s) 300, 1742, 3464
SmlI CTYRAG 4 cut(s) 533, 794, 1124, 2457
SmoI CTYRAG 4 cut(s) 533, 794, 1124, 2457
SseBI AGGCCT 2 cut(s) 2249, 2515
SsiI CCGC 6 cut(s) 122, 244, 286, 1695, 3087, 3431
SspI AATATT 1 cut(s) 2925
SspMI CTAG 4 cut(s) 755, 1416, 2103, 2339
StuI AGGCCT 2 cut(s) 2249, 2515
StyD4I CCNGG 7 cut(s) 1109, 1110, 2016, 2515, 2845, 2957, 3005
StyI CCWWGG 1 cut(s) 2250
TaiI ACGT 3 cut(s) 664, 2128, 3915
TaqI TCGA 5 cut(s) 306, 534, 1062, 1300, 3141
TatI WGTACW 5 cut(s) 1137, 2233, 3282, 3317, 3657
TfiI GAWTC 7 cut(s) 1477, 1935, 2473, 2717, 2762, 3233, 4046
Tru1I TTAA 7 cut(s) 299, 363, 1149, 1361, 2619, 4032, 4182
Tru9I TTAA 7 cut(s) 299, 363, 1149, 1361, 2619, 4032, 4182
TseFI GTSAC 3 cut(s) 978, 1744, 1989
Tsp45I GTSAC 3 cut(s) 978, 1744, 1989
TspGWI ACGGA 3 cut(s) 125, 1317, 4017
TspMI CCCGGG 1 cut(s) 1110
Van91I CCANNNNNTGG 2 cut(s) 494, 2945
VpaK11BI GGWCC 8 cut(s) 112, 241, 656, 905, 1106, 1657, 3110, 3993
XbaI TCTAGA 1 cut(s) 2102
XceI RCATGY 4 cut(s) 2057, 2440, 2705, 4130
XcmI CCANNNNNNNNNTGG 9 cut(s) 440, 511, 1004, 1723, 1835, 2124, 2248, 2926, 3730
XhoI CTCGAG 1 cut(s) 533
XmaI CCCGGG 1 cut(s) 1110
XmiI GTMKAC 1 cut(s) 3744
XspI CTAG 4 cut(s) 755, 1416, 2103, 2339
ZrmI AGTACT 2 cut(s) 2235, 3319
Zsp2I ATGCAT 2 cut(s) 3389, 3679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.