FvH4_2g29824
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000493
Physical Location & Seq
Forward (+)
23086409 .. 23094494
8086 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29824.t1

Sequence Viewer

Length: 4269 bp
ATGTGGAGAAGCGAGGATACTTCAATGGAAGCTTTCTCCAAGTCTTTTCGTGAAGAAGATGATGAAGAATCTCTCAATTGGGCTGCTATTCAGAGATTGCCTACCTTTTTACGCATAAGGAGAAGTATACTTGCTGATCAGGAGGAGGGTAAAGCCAGAGAAATTGATGTCAAGGATCTTGGATTATTAGAGAGGAAGAATTTGTTGGAGAGGTTAGTGAAGATTGCAGAGGAAGATAATGAGAAGTTCTTGTTCAAGCTCAGGGACCGCATGAATAGAGTTGGACTTGAATTTCCAACAACTGAAGTGCGGTTCGAGCATTTGAACGTTGAAGCAGAAGCTTATGTAGGAAGCAGGGCATTACCTACGATGTTCAACTTCTCCATTAATATGATAGAGCGGCTCTTGAACTTCATTCATCTTCTTCCTAGTAGAAAGAAACCTTTGCCAATCCTACATGGTGTAAGTGGAATAATCAAGCCAAGAAGAATGACACTGCTTTTAGGACCTCCAGGCTCTGGAAAAACCACATTGCTACTGGCATTGGCCGGAAAGCTTGGTAAAGATCTTAAAAGATCTGGAAGAGTTACATACAATGGACTCGGTATGGATGAGTTTGTACCACAGAGGACAGCAGCTTACATTAGTCAATATGATCTTCACTTACCAGAGTTGACTGTGAAAGAAACTCTTGCTTTTTCAGCAAGATGTCAAGGGGTCGGACCACGTTATGAAATGTTGGTAGAACTATTAAGAAGGGAAAAGGCTGCAAATATTCTGCCAGATTCAGATCTTGATGTCTACATGAAGGCAGCAGCACTGGAAGGACAAGAAACCACTGTGATTACAGATTATATACTCAAGGTTTTGGGACTTGAAGTTTGCGCTGACACCATGGTAGGCGATCAAATGAGACGAGGCATATCTGGTGGCCAAAGAAAGCGACTCACCACAGGGGAAATGCTTGTTGGGCCAGCAAGAGCACTTTTTATGGATGAGATATCAACTGGCTTGGACAGTTCAACAACATTTCAGATAGTAAATTCATTAAGACAGTCCATTCACATTCTCAATGGAACTGCTGTAATCTCTCTCCTGCAGCCCGCACCAGAAACTTATGATCTCTTTGATGATATAATTCTCCTCTCAGATGGGCATATTGTGTATCAAGGTCCTCGTGAAAATGTGCTTGAGTTCTTCCAGTACATAGGCTTCCAATGTCCCGAGAGGAAAGGAGTCGCTGATTTCCTCCAAGAAGTGACATCGTGGAAAGATCAGGAGCAATATTGGAGCCATAAAGATAAGTCTTATAGCTTTGTCACGTCCAAGGAATTTTCTGAAGCATTGCAGTCATTTCATATTGGTCAAAAACTCGGTGATGAGCTTACTAGACCTTTTGACAAGTCTCGAGGAAACCCTGCGTCTTTGACTACTGAGAAGTATGGTGTTAGCAAGAGCGAACTTTTTAAAGCTTGTATGTCTAGACATTATTTGCTTATGAAGAGGAACTCGATCGTCTACATTACCAGAATGACAATGTTCCTTATAACTGCTTTTGCCACAATGACACTATTCCTACGGACTGAGATGCACCGGGATACTGTAGATGATGGTGGCATATATATGGGAGCTATGTTCTTCACAATGATGGTAATTGTATTCAATGGATTCTCAGAGCTTGTTATGACGATCATGAAACTTCCTGTGTTTTTCAAGCAAAGGGACCTGCTCTTCTATCCTGCTTGGGCATACTCTTTACCAACCATGATTATAAGAATCCCCATGACCTTTGTGGAAGTTTCCATTTGGATGGCCATCACTTACTACGGTATTGGTTATGATCCAAGCATTGAAAGGTTCTGCAAGCAGTTCCTTTTACTCGTATGCATTAGCCAGATGGCAACTGGACTGTTCCGTTTGATAGGCGCATTAGGAAGGAACATGACTGTTGCAAACACATTTGGATCTGTTGCTTTACTATTCATTTTTGTTCTGGGTGGCTTTTTGTTATCACGAGAGGAGATGAAGAACTGGTTGCTGTGGGGATATTGGCTCTCACCGATGATGTATGGAATGAATGCAATGGCTGTCAATGAATTTTTTGGAAAGAGTTGGAGTCGTGTTCCACCCAACTCAACTGAATCGTTGGGAGTTATGGTCTTAAAGTCTCGAGGGGTATCACCAGAAGCAAGTTGGTACTGGATTGGAGTTGTAGCTTTAATTGGATTTTTTGTTATGTTCAACTTCCTTTACACTCTGGCACTTCAGCATCTGGAACCACTTGATACGCCTCAGGCAGTATTGTCCAAAGATTCCTTAGCAATGAAACACGCTGTGAAAACTGGAGAGAGCATTGAGCTATCGGCAACAAGAAAGAACTCTACAGGAGTAGGGAAAGAAGTTCTAGAGAACATGTCAGCCAATCGTTCCTCCAAGCAGCGAGGAATGATTCTTCCTTTTCAACCACTCTCGATTACATTTTCTGAAATCAGATATGCAATTGACATGCCACAGGAAATGAAAGCTCAAGGCATTACTGAGGATCGACTAGAACTTCTGAAGGGTGTGAGTGGTTCTTTCAGGCCTGGGGTCCTAACAGCTTTAATGGGTGTCAGTGGAGCTGGAAAGACTACTTTAATGGATGTTCTGGCAGGAAGGAAAACCGGTGGATATACTGAAGGAAACATTACCATTTCTGGATATCCAAAAAACCAAGAAACCTTTGCTCGCATATCAGGATATTGTGAGCAAACAGATATACACTCTCCACATGTTACGGTTTATGAGTCCTTGGTTTTTTCTGCATGGCTTCGGTTGTCCCCTGAGGTTGATTCCCTAACCAGAAAGATGTTTATTGAGGAAGTCATGGAACTTGTGGAACTGACCCCGATAAGAGATGCACTTGTTGGATTGCCTGGAGGTAATGGTCTTTCAACTGAGCAGCGTAAAAGGCTCACGATTGCAGTGGAGCTTGTTGCCAATCCATCCATAGTATTCATGGATGAACCTACCTCTGGCCTTGATGCCAGGGCAGCAGCAATTGTAATGAGAACAGTGAGGAATACAGTGGACACCGGAAGAACTGTTGTCTGCACCATCCATCAGCCAAGTATTGATATAGTTGATGCTTTTGATGAGATGTTCCTTCTGAAATGGGGTGGTGAGGAAATATATGTTGGCCCCTTAGGCTACCATTCTTCTGACTTGATCAAATACTTTGAGGGAATTAGCGGGGTTTCTAAGCTGAAGAATGGTTACAATCCTGCAACTTGGATGTTGGAGGTTACTTCTGCAGCCAAAGAAGCTGCTCTAGGGATTAATTTCACAGACATATACAAGGAATCGGAAGCATACAGGAGAAACAAGGCCTTGATCAACGAACTAAGTACGCCTCCACAAAATTCAAAAGACCTGTACTTCCCAACAAAATACTCGCAATCTTTTTATACCCAGTGCAAAGCGTGCCTGTGGAAGCAACATTTGTCATACTGGAGAAACCCGCCATACAGTGCAGTTAGACTTCTTTCCACAACAATGATAGCTTTAGCAACCGGGACAATATTCTGGGATCTTGGTTCCAGAAGGCAAAAGAAGCAAGATCTTTTTAACGCAATGGGTGCTATGAATTCTGCTGTTCTGTTCATTGGGCCACAAAATGCCTCAACAGTGCAGCCAGTTGTAGGCATTGAGCGAATAGTCTTTTATAGAGAAAGAGCTGCCGGAATGTACTCTGCCTTGCCGTATGCCTTAGGACAGCTTGGCATTGAGCTCCCATACACTTTGATCCAAACCATCATATATGTGGTTATAGAGTACAGCATGATCGGATTTGAGTGGACGGTCAGCAAGTTCTTTTGGCAACTATTCCTCCTGTTCTTCACGTACTTATACTACACTTTGTATGGCATGATGAGTGTGGTCATTACTCCCAACCTTGCCGTTTCCGCTGTAGTTTCCACTGCATTGAGCCCACTGTGGAGCGTTTTTTCAGGATTTGTCATTCCCAAATCAAGAATTCCAATATGGTGGAGATGGTTCTACTGGTCATGCCCGGTCTCTTGGAGCTTGTACGGATTGATTGGTTCACAGTTCGCAGGCATTGAGGACAGGCTTGATTCCGGCGAAACTGTGGAAGCTTTTACCAGGAGTTATTTTGGGTACAGAGAAGACTTTCTCAGTGTTGTTGCGATAGTGCTTGTAGCTATTTCAGTGCTCTTTGGATCCGTCTTTGCTTTTTCAATCAAAGCCTTTAATTTTCAAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1423

Amino Acids

160.59

Weight (kDa)

7.53

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 77 - 127 1.9e-07 ABC-transporter N-terminal
ABC_tran PF00005 152 - 333 3.5e-15 ABC transporter
ABC2_membrane PF01061 488 - 700 3.3e-46 ABC-2 type transporter
PDR_assoc PF08370 705 - 767 1.3e-24 Plant PDR ABC transporter associated
ABC_tran PF00005 853 - 1005 3.8e-21 ABC transporter
ABC2_membrane PF01061 1150 - 1364 2.8e-55 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1547, 1772
Acc36I ACCTGC 1 cut(s) 1734
AccB7I CCANNNNNTGG 1 cut(s) 518
AccBSI CCGCTC 1 cut(s) 400
AccI GTMKAC 3 cut(s) 127, 801, 1518
AciI CCGC 7 cut(s) 268, 310, 400, 1104, 3231, 3500, 3945
AclI AACGTT 1 cut(s) 327
AclWI GGATC 8 cut(s) 183, 1835, 1972, 2550, 3576, 3778, 4215, 4228
AcoI YGGCCR 3 cut(s) 546, 931, 1812
AcsI RAATTY 8 cut(s) 199, 290, 1042, 1331, 2096, 3400, 3625, 4014
AcuI CTGAAG 6 cut(s) 324, 1359, 2249, 2579, 2697, 3266
AdeI CACNNNGTG 1 cut(s) 2335
AfiI CCNNNNNNNGG 3 cut(s) 518, 3014, 3680
AflIII ACRYGT 2 cut(s) 2412, 2770
AgeI ACCGGT 1 cut(s) 2663
AjiI CACGTC 1 cut(s) 1323
AjnI CCWGG 5 cut(s) 511, 2584, 2914, 3026, 4142
AjuI GAANNNNNNNTTGG 6 cut(s) 188, 220, 951, 983, 3159, 3191
Alw21I GWGCWC 3 cut(s) 985, 3771, 4215
Alw26I GTCTC 4 cut(s) 907, 1410, 2172, 4060
AlwI GGATC 8 cut(s) 183, 1835, 1972, 2550, 3576, 3778, 4215, 4228
AlwNI CAGNNNCTG 2 cut(s) 518, 2272
Ama87I CYCGRG 3 cut(s) 1223, 1407, 2169
AoxI GGCC 9 cut(s) 546, 931, 971, 1812, 2582, 3016, 3178, 3366, 3647
ApoI RAATTY 8 cut(s) 199, 290, 1042, 1331, 2096, 3400, 3625, 4014
ArsI GACNNNNNNTTYG 2 cut(s) 864, 896
AseI ATTAAT 2 cut(s) 387, 3318
AsiGI ACCGGT 1 cut(s) 2663
Asp700I GAANNNNTTC 1 cut(s) 4170
AspLEI GCGC 2 cut(s) 887, 1928
AspS9I GGNCC 9 cut(s) 265, 506, 722, 971, 1172, 1723, 2590, 3179, 3647
AsuC2I CCSGG 3 cut(s) 1595, 3553, 4052
AsuHPI GGTGA 5 cut(s) 940, 1388, 2049, 2172, 3173
AvaI CYCGRG 3 cut(s) 1223, 1407, 2169
AvaII GGWCC 6 cut(s) 265, 506, 722, 1172, 1723, 2590
AxyI CCTNAGG 4 cut(s) 2292, 2823, 3184, 3748
BalI TGGCCA 2 cut(s) 933, 1814
BamHI GGATCC 1 cut(s) 4220
BanII GRGCYC 2 cut(s) 3771, 3971
BarI GAAGNNNNNNTAC 5 cut(s) 33, 1196, 1228, 3239, 3271
BauI CACGAG 2 cut(s) 1176, 2013
BbsI GAAGAC 1 cut(s) 4173
Bbv12I GWGCWC 3 cut(s) 985, 3771, 4215
BceAI ACGGC 2 cut(s) 3724, 3923
BciT130I CCWGG 5 cut(s) 513, 2586, 2916, 3028, 4144
BciVI GTATCC 2 cut(s) 10, 1591
BclI TGATCA 3 cut(s) 136, 3207, 3372
BcnI CCSGG 3 cut(s) 1595, 3553, 4052
BcoDI GTCTC 4 cut(s) 907, 1410, 2172, 4060
BfaI CTAG 6 cut(s) 429, 1389, 1482, 2405, 2549, 3311
BfmI CTRYAG 5 cut(s) 1097, 1602, 2382, 3291, 3948
BfuAI ACCTGC 1 cut(s) 1734
BfuI GTATCC 2 cut(s) 10, 1591
BglI GCCNNNNNGGC 1 cut(s) 3186
BglII AGATCT 4 cut(s) 565, 575, 790, 3598
Bme1390I CCNGG 8 cut(s) 513, 1595, 2586, 2916, 3028, 3553, 4052, 4144
Bme18I GGWCC 6 cut(s) 265, 506, 722, 1172, 1723, 2590
BmeT110I CYCGRG 3 cut(s) 1223, 1407, 2169
BmgBI CACGTC 1 cut(s) 1323
BmgT120I GGNCC 9 cut(s) 265, 506, 722, 971, 1172, 1723, 2590, 3179, 3647
BmiI GGNNCC 8 cut(s) 266, 1292, 1724, 2277, 2591, 3181, 3577, 4222
BmrFI CCNGG 8 cut(s) 513, 1595, 2586, 2916, 3028, 3553, 4052, 4144
BmrI ACTGGG 1 cut(s) 3445
BmsI GCATC 5 cut(s) 1578, 2278, 2887, 3013, 3115
BmuI ACTGGG 1 cut(s) 3445
BpiI GAAGAC 1 cut(s) 4173
BpmI CTGGAG 4 cut(s) 495, 2364, 2937, 3511
Bpu10I CCTNAGC 2 cut(s) 260, 2317
BpuEI CTTGAG 3 cut(s) 845, 1211, 2511
BpuMI CCSGG 3 cut(s) 1595, 3553, 4052
BsaAI YACGTR 1 cut(s) 3882
BsaBI GATNNNNATC 2 cut(s) 789, 1814
BsaI GGTCTC 1 cut(s) 4060
BsaJI CCNNGG 5 cut(s) 894, 1326, 2585, 2790, 3027
BsaWI WCCGGW 2 cut(s) 2663, 3074
BsaXI ACNNNNNCTCC 4 cut(s) 2142, 2172, 3852, 3882
Bsc4I CCNNNNNNNGG 3 cut(s) 518, 3014, 3680
Bse118I RCCGGY 1 cut(s) 2663
Bse21I CCTNAGG 4 cut(s) 2292, 2823, 3184, 3748
Bse3DI GCAATG 5 cut(s) 530, 1343, 2088, 2328, 3618
Bse8I GATNNNNATC 2 cut(s) 789, 1814
BseBI CCWGG 5 cut(s) 513, 2586, 2916, 3028, 4144
BseDI CCNNGG 5 cut(s) 894, 1326, 2585, 2790, 3027
BseGI GGATG 8 cut(s) 616, 1000, 1815, 2647, 2984, 3007, 3096, 3279
BseJI GATNNNNATC 2 cut(s) 789, 1814
BseLI CCNNNNNNNGG 3 cut(s) 518, 3014, 3680
BseMI GCAATG 5 cut(s) 530, 1343, 2088, 2328, 3618
BseRI GAGGAG 3 cut(s) 158, 1133, 2033
BsgI GTGCAG 3 cut(s) 3076, 3531, 3689
Bsh1285I CGRYCG 1 cut(s) 1515
BshFI GGCC 9 cut(s) 548, 933, 973, 1814, 2584, 3018, 3180, 3368, 3649
BshTI ACCGGT 1 cut(s) 2663
BsiEI CGRYCG 1 cut(s) 1515
BsiHKAI GWGCWC 3 cut(s) 985, 3771, 4215
BsiHKCI CYCGRG 3 cut(s) 1223, 1407, 2169
BsiSI CCGG 8 cut(s) 549, 1594, 2664, 3075, 3552, 3720, 4052, 4119
BslFI GGGAC 6 cut(s) 278, 885, 1206, 1736, 2803, 3568
BslI CCNNNNNNNGG 3 cut(s) 518, 3014, 3680
BsmAI GTCTC 4 cut(s) 907, 1410, 2172, 4060
BsmBI CGTCTC 1 cut(s) 907
BsmFI GGGAC 6 cut(s) 278, 885, 1206, 1736, 2803, 3568
BsmI GAATGC 1 cut(s) 2083
BsnI GGCC 9 cut(s) 548, 933, 973, 1814, 2584, 3018, 3180, 3368, 3649
Bso31I GGTCTC 1 cut(s) 4060
BsoBI CYCGRG 3 cut(s) 1223, 1407, 2169
Bsp1286I GDGCHC 4 cut(s) 985, 3771, 3971, 4215
Bsp19I CCATGG 1 cut(s) 894
BspACI CCGC 7 cut(s) 268, 310, 400, 1104, 3231, 3500, 3945
BspANI GGCC 9 cut(s) 548, 933, 973, 1814, 2584, 3018, 3180, 3368, 3649
BspHI TCATGA 1 cut(s) 1692
BspLI GGNNCC 8 cut(s) 266, 1292, 1724, 2277, 2591, 3181, 3577, 4222
BspMAI CTGCAG 2 cut(s) 1101, 3295
BspMI ACCTGC 1 cut(s) 1734
BspPI GGATC 8 cut(s) 183, 1835, 1972, 2550, 3576, 3778, 4215, 4228
BspQI GCTCTTC 1 cut(s) 1736
BspTNI GGTCTC 1 cut(s) 4060
BsrBI CCGCTC 1 cut(s) 400
BsrDI GCAATG 5 cut(s) 530, 1343, 2088, 2328, 3618
BsrFI RCCGGY 1 cut(s) 2663
BssAI RCCGGY 1 cut(s) 2663
BssECI CCNNGG 5 cut(s) 894, 1326, 2585, 2790, 3027
BssNAI GTATAC 1 cut(s) 128
BssSI CACGAG 2 cut(s) 1176, 2013
BssT1I CCWWGG 3 cut(s) 894, 1326, 2790
Bst1107I GTATAC 1 cut(s) 128
Bst2BI CACGAG 2 cut(s) 1176, 2013
Bst2UI CCWGG 5 cut(s) 513, 2586, 2916, 3028, 4144
Bst6I CTCTTC 3 cut(s) 577, 1496, 1736
BstAPI GCANNNNNTGC 2 cut(s) 3462, 3617
BstBAI YACGTR 1 cut(s) 3882
BstC8I GCNNGC 6 cut(s) 975, 1104, 1865, 2728, 3463, 4096
BstDSI CCRYGG 1 cut(s) 894
BstF5I GGATG 8 cut(s) 616, 1000, 1815, 2647, 2984, 3007, 3096, 3279
BstHHI GCGC 2 cut(s) 887, 1928
BstMAI GTCTC 4 cut(s) 907, 1410, 2172, 4060
BstMCI CGRYCG 1 cut(s) 1515
BstNI CCWGG 5 cut(s) 513, 2586, 2916, 3028, 4144
BstNSI RCATGY 3 cut(s) 2416, 2509, 2774
BstSCI CCNGG 8 cut(s) 511, 1593, 2584, 2914, 3026, 3551, 4050, 4142
BstSFI CTRYAG 5 cut(s) 1097, 1602, 2382, 3291, 3948
BstV2I GAAGAC 1 cut(s) 4173
BstX2I RGATCY 8 cut(s) 175, 565, 575, 790, 1964, 3568, 3598, 4220
BstXI CCANNNNNNTGG 2 cut(s) 1810, 4026
BstYI RGATCY 8 cut(s) 175, 565, 575, 790, 1964, 3568, 3598, 4220
BstZ17I GTATAC 1 cut(s) 128
Bsu36I CCTNAGG 4 cut(s) 2292, 2823, 3184, 3748
BsuI GTATCC 2 cut(s) 10, 1591
BsuRI GGCC 9 cut(s) 548, 933, 973, 1814, 2584, 3018, 3180, 3368, 3649
BtgI CCRYGG 1 cut(s) 894
BtrI CACGTC 1 cut(s) 1323
BtsCI GGATG 8 cut(s) 616, 1000, 1815, 2647, 2984, 3007, 3096, 3279
BtsI GCAGTG 3 cut(s) 494, 2970, 3957
BveI ACCTGC 1 cut(s) 1734
Cac8I GCNNGC 6 cut(s) 975, 1104, 1865, 2728, 3463, 4096
CaiI CAGNNNCTG 2 cut(s) 518, 2272
CciI TCATGA 1 cut(s) 1692
CfoI GCGC 2 cut(s) 887, 1928
Cfr10I RCCGGY 1 cut(s) 2663
Cfr13I GGNCC 9 cut(s) 265, 506, 722, 971, 1172, 1723, 2590, 3179, 3647
CseI GACGC 1 cut(s) 1410
CspAI ACCGGT 1 cut(s) 2663
DraI TTTAAA 1 cut(s) 1468
DraIII CACNNNGTG 1 cut(s) 2335
EaeI YGGCCR 3 cut(s) 546, 931, 1812
Eam1104I CTCTTC 3 cut(s) 577, 1496, 1736
EarI CTCTTC 3 cut(s) 577, 1496, 1736
Ecl136II GAGCTC 1 cut(s) 3769
Eco130I CCWWGG 3 cut(s) 894, 1326, 2790
Eco147I AGGCCT 2 cut(s) 2584, 3368
Eco24I GRGCYC 2 cut(s) 3771, 3971
Eco31I GGTCTC 1 cut(s) 4060
Eco32I GATATC 2 cut(s) 1002, 2702
Eco47I GGWCC 6 cut(s) 265, 506, 722, 1172, 1723, 2590
Eco53kI GAGCTC 1 cut(s) 3769
Eco57I CTGAAG 6 cut(s) 324, 1359, 2249, 2579, 2697, 3266
Eco81I CCTNAGG 4 cut(s) 2292, 2823, 3184, 3748
Eco88I CYCGRG 3 cut(s) 1223, 1407, 2169
EcoICRI GAGCTC 1 cut(s) 3769
EcoO109I RGGNCCY 4 cut(s) 506, 1172, 1723, 2590
EcoRI GAATTC 2 cut(s) 3625, 4014
EcoRII CCWGG 5 cut(s) 511, 2584, 2914, 3026, 4142
EcoRV GATATC 2 cut(s) 1002, 2702
EcoT14I CCWWGG 3 cut(s) 894, 1326, 2790
EcoT22I ATGCAT 1 cut(s) 1889
EcoT38I GRGCYC 2 cut(s) 3771, 3971
ErhI CCWWGG 3 cut(s) 894, 1326, 2790
Esp3I CGTCTC 1 cut(s) 907
FalI AAGNNNNNCTT 2 cut(s) 675, 707
FaqI GGGAC 6 cut(s) 278, 885, 1206, 1736, 2803, 3568
FauI CCCGC 3 cut(s) 1111, 3224, 3507
FbaI TGATCA 3 cut(s) 136, 3207, 3372
FblI GTMKAC 3 cut(s) 127, 801, 1518
FokI GGATG 8 cut(s) 623, 1007, 1822, 2654, 2971, 3014, 3083, 3286
FriOI GRGCYC 2 cut(s) 3771, 3971
FspBI CTAG 6 cut(s) 429, 1389, 1482, 2405, 2549, 3311
GlaI GCGC 2 cut(s) 886, 1927
GsuI CTGGAG 4 cut(s) 495, 2364, 2937, 3511
HaeIII GGCC 9 cut(s) 548, 933, 973, 1814, 2584, 3018, 3180, 3368, 3649
HapII CCGG 8 cut(s) 549, 1594, 2664, 3075, 3552, 3720, 4052, 4119
HgaI GACGC 1 cut(s) 1410
HhaI GCGC 2 cut(s) 887, 1928
Hin6I GCGC 2 cut(s) 885, 1926
HinP1I GCGC 2 cut(s) 885, 1926
HincII GTYRAC 1 cut(s) 675
HindII GTYRAC 1 cut(s) 675
HindIII AAGCTT 5 cut(s) 30, 339, 554, 1470, 4134
HpaII CCGG 8 cut(s) 549, 1594, 2664, 3075, 3552, 3720, 4052, 4119
HphI GGTGA 5 cut(s) 940, 1388, 2049, 2172, 3173
Hpy166II GTNNAC 7 cut(s) 128, 675, 802, 1519, 3070, 3837, 4085
Hpy8I GTNNAC 7 cut(s) 128, 675, 802, 1519, 3070, 3837, 4085
HpyAV CCTTC 9 cut(s) 750, 802, 818, 1929, 2554, 2649, 2672, 3155, 3576
HpyCH4IV ACGT 4 cut(s) 327, 727, 1322, 3881
HpySE526I ACGT 4 cut(s) 327, 727, 1322, 3881
HspAI GCGC 2 cut(s) 885, 1926
Ksp22I TGATCA 3 cut(s) 136, 3207, 3372
LguI GCTCTTC 1 cut(s) 1736
LmnI GCTCC 8 cut(s) 1279, 1290, 1628, 2618, 2968, 3774, 3978, 4062
LweI GCATC 5 cut(s) 1578, 2278, 2887, 3013, 3115
MaeI CTAG 6 cut(s) 429, 1389, 1482, 2405, 2549, 3311
MaeII ACGT 4 cut(s) 327, 727, 1322, 3881
MaeIII GTNAC 6 cut(s) 586, 1258, 1318, 2773, 3254, 3283
MbiI CCGCTC 1 cut(s) 400
MfeI CAATTG 3 cut(s) 76, 2499, 3039
MflI RGATCY 8 cut(s) 175, 565, 575, 790, 1964, 3568, 3598, 4220
MhlI GDGCHC 4 cut(s) 985, 3771, 3971, 4215
MlsI TGGCCA 2 cut(s) 933, 1814
MluNI TGGCCA 2 cut(s) 933, 1814
MlyI GAGTC 5 cut(s) 594, 939, 1245, 2125, 2795
MmeI TCCRAC 7 cut(s) 186, 262, 320, 700, 2093, 2887, 3258
Mox20I TGGCCA 2 cut(s) 933, 1814
Mph1103I ATGCAT 1 cut(s) 1889
MroXI GAANNNNTTC 1 cut(s) 4170
MscI TGGCCA 2 cut(s) 933, 1814
MslI CAYNNNNRTG 6 cut(s) 389, 1622, 1646, 1808, 3533, 3800
Msp20I TGGCCA 2 cut(s) 933, 1814
MspA1I CMGCKG 1 cut(s) 3947
MspI CCGG 8 cut(s) 549, 1594, 2664, 3075, 3552, 3720, 4052, 4119
MspR9I CCNGG 8 cut(s) 513, 1595, 2586, 2916, 3028, 3553, 4052, 4144
MunI CAATTG 3 cut(s) 76, 2499, 3039
Mva1269I GAATGC 1 cut(s) 2083
MvaI CCWGG 5 cut(s) 513, 2586, 2916, 3028, 4144
NciI CCSGG 3 cut(s) 1595, 3553, 4052
NcoI CCATGG 1 cut(s) 894
NlaIV GGNNCC 8 cut(s) 266, 1292, 1724, 2277, 2591, 3181, 3577, 4222
NmuCI GTSAC 2 cut(s) 1258, 1318
NsiI ATGCAT 1 cut(s) 1889
NspI RCATGY 3 cut(s) 2416, 2509, 2774
PaeR7I CTCGAG 2 cut(s) 1407, 2169
PagI TCATGA 1 cut(s) 1692
PceI AGGCCT 2 cut(s) 2584, 3368
PciI ACATGT 2 cut(s) 2412, 2770
PciSI GCTCTTC 1 cut(s) 1736
PctI GAATGC 1 cut(s) 2083
PdmI GAANNNNTTC 1 cut(s) 4170
PflMI CCANNNNNTGG 1 cut(s) 518
PinAI ACCGGT 1 cut(s) 2663
Ple19I CGATCG 1 cut(s) 1515
PleI GAGTC 5 cut(s) 594, 939, 1244, 2124, 2794
PpsI GAGTC 5 cut(s) 594, 939, 1244, 2124, 2794
Ppu21I YACGTR 1 cut(s) 3882
PpuMI RGGWCCY 4 cut(s) 506, 1172, 1723, 2590
PscI ACATGT 2 cut(s) 2412, 2770
PshBI ATTAAT 2 cut(s) 387, 3318
PsiI TTATAA 2 cut(s) 1547, 1772
Psp124BI GAGCTC 1 cut(s) 3771
Psp1406I AACGTT 1 cut(s) 327
Psp5II RGGWCCY 4 cut(s) 506, 1172, 1723, 2590
Psp6I CCWGG 5 cut(s) 511, 2584, 2914, 3026, 4142
PspGI CCWGG 5 cut(s) 511, 2584, 2914, 3026, 4142
PspN4I GGNNCC 8 cut(s) 266, 1292, 1724, 2277, 2591, 3181, 3577, 4222
PspPI GGNCC 9 cut(s) 265, 506, 722, 971, 1172, 1723, 2590, 3179, 3647
PspPPI RGGWCCY 4 cut(s) 506, 1172, 1723, 2590
PstI CTGCAG 2 cut(s) 1101, 3295
PstNI CAGNNNCTG 2 cut(s) 518, 2272
PsuI RGATCY 8 cut(s) 175, 565, 575, 790, 1964, 3568, 3598, 4220
PvuI CGATCG 1 cut(s) 1515
RseI CAYNNNNRTG 6 cut(s) 389, 1622, 1646, 1808, 3533, 3800
SacI GAGCTC 1 cut(s) 3771
SapI GCTCTTC 1 cut(s) 1736
Sau96I GGNCC 9 cut(s) 265, 506, 722, 971, 1172, 1723, 2590, 3179, 3647
SchI GAGTC 5 cut(s) 594, 939, 1245, 2125, 2795
ScrFI CCNGG 8 cut(s) 513, 1595, 2586, 2916, 3028, 3553, 4052, 4144
SduI GDGCHC 4 cut(s) 985, 3771, 3971, 4215
SfaNI GCATC 5 cut(s) 1578, 2278, 2887, 3013, 3115
SfcI CTRYAG 5 cut(s) 1097, 1602, 2382, 3291, 3948
Sfr274I CTCGAG 2 cut(s) 1407, 2169
SinI GGWCC 6 cut(s) 265, 506, 722, 1172, 1723, 2590
SlaI CTCGAG 2 cut(s) 1407, 2169
SmiMI CAYNNNNRTG 6 cut(s) 389, 1622, 1646, 1808, 3533, 3800
SmlI CTYRAG 5 cut(s) 860, 1190, 1407, 2169, 2526
SmoI CTYRAG 5 cut(s) 860, 1190, 1407, 2169, 2526
SseBI AGGCCT 2 cut(s) 2584, 3368
SsiI CCGC 7 cut(s) 268, 310, 400, 1104, 3231, 3500, 3945
SspI AATATT 3 cut(s) 775, 1286, 3561
SspMI CTAG 6 cut(s) 429, 1389, 1482, 2405, 2549, 3311
SstI GAGCTC 1 cut(s) 3771
StuI AGGCCT 2 cut(s) 2584, 3368
StyD4I CCNGG 8 cut(s) 511, 1593, 2584, 2914, 3026, 3551, 4050, 4142
StyI CCWWGG 3 cut(s) 894, 1326, 2790
TaiI ACGT 4 cut(s) 330, 730, 1325, 3884
TaqI TCGA 6 cut(s) 315, 1408, 1511, 2170, 2471, 2545
TatI WGTACW 4 cut(s) 1203, 3414, 3726, 3813
TauI GCSGC 1 cut(s) 403
TseFI GTSAC 2 cut(s) 1258, 1318
Tsp45I GTSAC 2 cut(s) 1258, 1318
TspGWI ACGGA 4 cut(s) 1594, 1904, 4086, 4213
Van91I CCANNNNNTGG 1 cut(s) 518
VpaK11BI GGWCC 6 cut(s) 265, 506, 722, 1172, 1723, 2590
VspI ATTAAT 2 cut(s) 387, 3318
XapI RAATTY 8 cut(s) 199, 290, 1042, 1331, 2096, 3400, 3625, 4014
XbaI TCTAGA 2 cut(s) 1481, 2404
XceI RCATGY 3 cut(s) 2416, 2509, 2774
XcmI CCANNNNNNNNNTGG 6 cut(s) 535, 1789, 1901, 2190, 2995, 3799
XhoI CTCGAG 2 cut(s) 1407, 2169
XmiI GTMKAC 3 cut(s) 127, 801, 1518
XmnI GAANNNNTTC 1 cut(s) 4170
XspI CTAG 6 cut(s) 429, 1389, 1482, 2405, 2549, 3311
Zsp2I ATGCAT 1 cut(s) 1889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.