MD15G1117800.v1.1
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000493
Physical Location & Seq
Reverse (-)
8400846 .. 8409411
8566 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1117800.v1.1.491

Sequence Viewer

Length: 4275 bp
ATGAGCAATCCTGGGAGTGGACGTAGCAGCTTTGACATGTGGAGAAACACTTCCATGGAAGTTTTCTCCATGTCTTCTCGTCACGAAGAAGATGATGAAGAGTCTCTGACATGGGCTGCTATCGAGAGACTGCCTACGTATTTACGCACGCGGAGAGGTCTGCTTGCGGAAGAGGAGGGCAAAGCTAGAGAGATTGATGTGACGAACCTGGGATTACTAGAAAGGAAGAACTTGTTGGAGAGACTGATTAAGATTGCAGAGGAAGATAATGAGAAGTTCTTGTTGAAGCTCAAGGATCGCATGAACAGAGTTGGACTTGAATATCCGACAACTGAAGTCCGGTTCGAGCATTTAAATGTTGAAGCAGAGGCTTATGTTGGCGGTAGGGCATTGCCTACAATGTTCAACTTTTCCATTAATATGTTAGAGTTGTTCTTGAATTATCTCCATATTCTTCCAAGTCGAAAGCAACAATTACCAATCCTCAATGATGTTAGTGGAATTATCAAGCCAAAAAGAATGACACTGCTTTTAGGCCCCCCGGGCTCTGGAAAGACCACATTACTATTGGCACTGGCCGGAAAACTTGGTAAAGATCTAAAACTTTCGGGGAGAGTTACATACAACGGACACGGGATGGAAGAGTTTATACCAGAGAGAACATCAGCTTATATAAGTCAACATGATCTACACATACCGGAATTGACAGTGAGAGAAACGATGGCTTTTTCAGCAAGATGTCAAGGGGTCGGGCCACGTTATGAAATGCTGGTAGAATTATCAAGGAGAGAGAAGGCCGCAAACATTAAGCCGGATCCTGATCTTGATGTTTACATGAAGGCAGCAGCACTGGAAGGACAGGAAACCAATGTAGTTACAGATTACATAATCAAGGTTCTGGGGCTCGACATTTGTGCTGACACCCTGGTAGGGGATCACATGAGACGAGGTGTCTCTGGTGGACAAAGAAAGAGACTCACCACAGGGGAGATGCTGGTCGGACCAGCAAAAGCACTTTTCATGGATGAAATATCTACCGGCTTGGACAGTTCGACTACATATCACATAGTAAATTCACTCAGACAATCCATCCACATCCTCAATGGAACTGCTCTAATCTCTCTCTTGCAGCCAGCACCAGAAACTTATGATCTCTTTGATGACATAATTCTCCTCTCAGATGGCCACATTGTGTATCAAGGCCCTCGTGAGAATGTGCTTGAATTCTTCGAACAAATGGGATTCAAATGTCCAGAGAGGAAAGGAGTTGCTGATTTCCTACAAGAAGTAACATCAAGGAAAGATCAAGAGCAATACTGGGCTCATAAAGAGAAGCCTTATAGCTTTGTAACTTCCGATGAATTTGCTGAAGCATTGCAGTCATTTCACATCGGTAGAGAACTTGGCGATGAGCTTGCCATTCCGTTTGACAAGTCTAAAGGCAACCCTGCATCTTTAACAACTAAGAAGTATGGAGTTGGCAAGAAGGAACTTTACAAAGCTTGTATGTCTAGACAAATTTTGCTTATGAAGAGGAATTCGTTTATCTACATTTTCAAAATGATCCAGTTTAGTTTAATGGCTTTGGTAACAATGACATTATTCTTACGGACTGAGATGCACCGAGGTAGTGTGGAAGATGGTGGGATTTACATGGGATCTTTGTTTTTCACAATTGTGATCATTATGTTCAGTGGGTACTCAGAACTTGCTATGACTGTAATGAGACTTCCTGTGTTTTTCAAGCAAAGGGATCTTCTGTTCTTTCCTGCTTGGGCGTATGCTTTACCGAATTGTCTGATAAGGATCCCTTTGACCATTGTGGAGGTTTCTATTTGGGTGACCGTTACTTACTACGTTATAGGTTATGATCCGAACATTGGAAGGTTCTTCAAACAGTTCCTTTCACTGCTGTGTATTAGCCAGATGGCAAATGGACTGTTCCGATTGATAGCGGCAATAGGCAGGAGCCCAATTGTTGCAAACACATTTGGGTCTGCTGCTTTACTTGTTGTTTTCGTTCTAGGTGGCTTTATCTTATCTCGAGACAGTATGAAGAAATGGTTGCTGTGGGGGTATTGGCTCTCACCGATGGCATATGGAATGAATGCCTTGGCCGTCAACGAATTTCTTGGAAAAAGTTGGAGACATGTTCCTGCCAACTCCACAGAACCATTAGGAGTTCTGGTCATGAAGTCTCGAGGGGTACTACCAGAAGCGCGCTGGTACTGGCTTGGAGTAGTAGCTTTACTTGGATTTATTCTTTTATTCAACTTCCTTTTCACCTTGGCACTTCAGTATCTTGATCCCATTGACAAGCCTCAGGCAGTAATGTCCAAAGAAGCCTTGGCAAAGAAACTTGCCAAGAAAACTGGAGACACCACCGAGCTTTCATTAACAAGAAATGAAAGTCAAGAGAATATGTCTGCCAATCGTACCAGGAAGCGAGGAATGGTTCTTCCATTTGAACCCCTCTCAATTACATTTAATGAAATCAGATATGCAGTTGACATGCCACAGGAAATGAAAGCTGAAGGCATAACTGAGAATCGACTAGAACTTCTGAAGGGTGTGAGTGGTGCCTTTCGGCCTGGTGTCCTAACAGCCCTAATGGGTGTTAGTGGCGCAGGAAAGACTACTCTAATGGATGTCTTGGCCGGAAGGAAAACAGGTGGATATATCGAGGGAAACATCACCATATCTGGATATCCAAAAAATCAAGAAACATTTGCTCGCATATCCGGATATTGTGAACAAACAGATATACACTCTCCTCATGTCACGGTTTATGAGGCTTTGATTTATTCAGCATGGCTCCGGTTACCACCAGAGGTTGATTCCCCAACCAGAAAGATGTTCATCGAGGAAGTTATGGAGCTTGTGGAACTGACCTCAATAAGGGAAGCACTTGTTGGATTGCCCGGAGTGAATGGTCTTTCAACTGAGCAGCGTAAAAGGCTAACAATTGCAGTAGAGCTTGTTGCCAACCCCTCCATAATATTCATGGATGAGCCAACCTCTGGCCTTGATGCCAGGGCAGCAGCAATTGTAATGAGAACAGTGAGGAATACGGTGGACACTGGGCGAACTGTAGTCTGCACCATTCACCAGCCAAGCATTGACATATTTGATGCTTTCGATGAGCTGTTTCTTTTGAAACGAGGAGGCGAGGAAATATATGTTGGGCCTTTAGGCCACCATTCTTCCGACTTGATCAACTATTTTGAGGGAATTAGTGGAGTTTCTAAATTACGGGACAGTCACAATCCTGCAACTTGGATGCTGGAGGTTACTTCTGCAGGACAACAAGAGGCTCTCGGGGTTAGTTTCAGTGACATATATAAGAACTCGGAACTACACAGGAGAAATAAGGTCTTGATCAAGGAACTAAGTACTCCACCACCAAATTCAAGAGATTTGCACTTTTCTACACAGTATTCTCAGTCTTTCTTCAACCAGTGTATAGCTTGCCTATGGAAACAGCATTGGTCTTACTGGCGAAACCCATCATACAGTGCAGTGAGACTTTTGTACACTGCTATGATGGCTTTAGTATTTGGGACAATATTCTGGGGTCTTGGTTCCAAAAGGAATAACCAACAAGATGTTCTTAATGCAATGGGTTCTATGTATTCTGCTGTTCTCTTCATTGGGATACAAAATGCCTCATCAGTGCAGCCAGTTGTAGGTATTGAAAGGATAGTATTTTACAGAGAAAGGGCTGCTGGAATGTACTCAGCTTTTCCATATGCCTTGGGACAGATAATCATTGAGCTTCCATATACTTTGTTCCAAACTATCATATATGGGCTTATAGTATACACCATGATCGGATTCGATTGGACGGTCGGCAAGTTCCTTTGGTATCTCTTCTTCATGTACTTCACCTTCTTATACTACACATTGTATGGTATGATGATTGTGGGCATTACTCCCAACACAACCATTGCTGCTGTAGCTTCCTCAGCCGTCTACCCCTTATGGAATGTTTTTTCCGGATTCATCATTCCAAGAACAAGAATTCCGATATGGTGGAGATGGTTCTACTGGGTGTGTCCGGTGTCTTGGACTTTGTACGGATTGCTTACTTCACAATTTGGAGGCATCAAGGATACGCTTGATTCGGGTGAAACTGTTGAAGATTTTATGAAGGATTATTTTGGCTACAGAGAAGGCTTTCTAGGTGTTGTTGCAATTGTCCATGTTGGGATTTCAGTGCTCTTCGGATTCATCTTTGCCTTTTCAATCAAGACATTGAACTTCCAGAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1425

Amino Acids

160.86

Weight (kDa)

7.58

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 87 - 137 6.5e-07 ABC-transporter N-terminal
ABC_tran PF00005 162 - 343 8.2e-17 ABC transporter
ABC2_membrane_7 PF19055 377 - 429 4.4e-06 ABC-2 type transporter
ABC2_membrane PF01061 498 - 710 4.3e-47 ABC-2 type transporter
PDR_assoc PF08370 715 - 777 9.4e-26 Plant PDR ABC transporter associated
ABC_tran PF00005 855 - 1007 3.4e-20 ABC transporter
ABC2_membrane PF01061 1153 - 1366 2e-60 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 2579
AccB7I CCANNNNNTGG 1 cut(s) 3020
AccI GTMKAC 2 cut(s) 3819, 3972
AccII CGCG 2 cut(s) 151, 2221
AccIII TCCGGA 2 cut(s) 2741, 3995
AciI CCGC 5 cut(s) 151, 167, 381, 798, 1955
AcoI YGGCCR 4 cut(s) 576, 1183, 2115, 2655
AcsI RAATTY 8 cut(s) 1072, 1223, 1361, 1518, 1537, 2126, 3406, 4020
AcuI CTGAAG 5 cut(s) 354, 1389, 2279, 2553, 2585
AdeI CACNNNGTG 1 cut(s) 1192
AfaI GTAC 9 cut(s) 1700, 2208, 2228, 2437, 3394, 3533, 3734, 3881, 4076
AfiI CCNNNNNNNGG 8 cut(s) 17, 548, 930, 931, 1880, 2898, 3020, 3686
AflIII ACRYGT 2 cut(s) 36, 2149
AhdI GACNNNNNGTC 1 cut(s) 950
AjnI CCWGG 6 cut(s) 10, 207, 924, 2438, 2590, 3032
AjuI GAANNNNNNNTTGG 8 cut(s) 218, 250, 2895, 2927, 3165, 3197, 3591, 3623
AleI CACNNNNGTG 2 cut(s) 1676, 1912
AloI GAACNNNNNNTCC 4 cut(s) 1745, 1777, 4006, 4038
Alw21I GWGCWC 1 cut(s) 4221
Ama87I CYCGRG 4 cut(s) 541, 2043, 2199, 3317
Aor13HI TCCGGA 2 cut(s) 2741, 3995
ApoI RAATTY 8 cut(s) 1072, 1223, 1361, 1518, 1537, 2126, 3406, 4020
AseI ATTAAT 1 cut(s) 417
Asp700I GAANNNNTTC 2 cut(s) 49, 4176
AspLEI GCGC 3 cut(s) 2221, 2223, 2627
AspS9I GGNCC 5 cut(s) 536, 752, 1001, 1202, 3185
AsuC2I CCSGG 3 cut(s) 542, 543, 2922
AsuHPI GGTGA 8 cut(s) 970, 1852, 2079, 2275, 2686, 3098, 3877, 4139
AsuII TTCGAA 1 cut(s) 1230
AvaI CYCGRG 4 cut(s) 541, 2043, 2199, 3317
AvaII GGWCC 1 cut(s) 1001
AxyI CCTNAGG 1 cut(s) 2322
BaeI ACNNNNGTAYC 2 cut(s) 2282, 2315
BalI TGGCCA 1 cut(s) 1185
BamHI GGATCC 2 cut(s) 814, 1806
BanI GGYRCC 1 cut(s) 2579
BanII GRGCYC 4 cut(s) 548, 906, 1324, 1973
BauI CACGAG 1 cut(s) 1206
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 4221
BbvCI CCTCAGC 1 cut(s) 3964
BceAI ACGGC 2 cut(s) 2102, 3953
BcgI CGANNNNNNTGC 6 cut(s) 896, 930, 1346, 1380, 1397, 1431
BciT130I CCWGG 6 cut(s) 12, 209, 926, 2440, 2592, 3034
BciVI GTATCC 2 cut(s) 3648, 4105
BclI TGATCA 3 cut(s) 1680, 3213, 3378
BcnI CCSGG 3 cut(s) 542, 543, 2922
BfaI CTAG 6 cut(s) 186, 218, 1512, 2024, 2555, 4181
BfmI CTRYAG 4 cut(s) 3090, 3297, 3954, 4165
BfuI GTATCC 2 cut(s) 3648, 4105
BglI GCCNNNNNGGC 1 cut(s) 543
BglII AGATCT 1 cut(s) 595
BmcAI AGTACT 1 cut(s) 3394
Bme1390I CCNGG 9 cut(s) 12, 209, 542, 543, 926, 2440, 2592, 2922, 3034
Bme18I GGWCC 1 cut(s) 1001
BmeRI GACNNNNNGTC 1 cut(s) 950
BmeT110I CYCGRG 4 cut(s) 541, 2043, 2199, 3317
BmgT120I GGNCC 5 cut(s) 536, 752, 1001, 1202, 3185
BmiI GGNNCC 7 cut(s) 538, 816, 1808, 1970, 2581, 2816, 3583
BmrFI CCNGG 9 cut(s) 12, 209, 542, 543, 926, 2440, 2592, 2922, 3034
BmrI ACTGGG 3 cut(s) 1327, 3090, 4057
BmsI GCATC 7 cut(s) 981, 1460, 1608, 3019, 3121, 3270, 4113
BmuI ACTGGG 3 cut(s) 1327, 3090, 4057
BpiI GAAGAC 1 cut(s) 66
BplI GAGNNNNNCTC 2 cut(s) 3002, 3034
BpmI CTGGAG 2 cut(s) 2394, 3305
Bpu10I CCTNAGC 1 cut(s) 3964
Bpu14I TTCGAA 1 cut(s) 1230
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 3 cut(s) 542, 543, 2922
BsaAI YACGTR 1 cut(s) 138
BsaBI GATNNNNATC 3 cut(s) 819, 1805, 2858
BsaWI WCCGGW 6 cut(s) 339, 697, 2741, 2817, 3995, 4057
BsaXI ACNNNNNCTCC 4 cut(s) 7, 37, 2172, 2202
Bsc4I CCNNNNNNNGG 8 cut(s) 17, 548, 930, 931, 1880, 2898, 3020, 3686
Bse118I RCCGGY 1 cut(s) 1037
Bse21I CCTNAGG 1 cut(s) 2322
Bse3DI GCAATG 4 cut(s) 389, 1373, 3624, 3945
Bse8I GATNNNNATC 3 cut(s) 819, 1805, 2858
BseAI TCCGGA 2 cut(s) 2741, 3995
BseBI CCWGG 6 cut(s) 12, 209, 926, 2440, 2592, 3034
BseGI GGATG 7 cut(s) 642, 1030, 1089, 1095, 2653, 3013, 3285
BseJI GATNNNNATC 3 cut(s) 819, 1805, 2858
BseLI CCNNNNNNNGG 8 cut(s) 17, 548, 930, 931, 1880, 2898, 3020, 3686
BseMI GCAATG 4 cut(s) 389, 1373, 3624, 3945
BsePI GCGCGC 1 cut(s) 2219
BseRI GAGGAG 4 cut(s) 188, 1163, 2763, 3177
BsgI GTGCAG 3 cut(s) 3082, 3537, 3695
Bsh1236I CGCG 2 cut(s) 151, 2221
Bsh1285I CGRYCG 1 cut(s) 3849
BshNI GGYRCC 1 cut(s) 2579
BsiEI CGRYCG 1 cut(s) 3849
BsiHKAI GWGCWC 1 cut(s) 4221
BsiHKCI CYCGRG 4 cut(s) 541, 2043, 2199, 3317
BslFI GGGAC 3 cut(s) 3269, 3574, 3771
BslI CCNNNNNNNGG 8 cut(s) 17, 548, 930, 931, 1880, 2898, 3020, 3686
BsmBI CGTCTC 1 cut(s) 937
BsmFI GGGAC 3 cut(s) 3269, 3574, 3771
BsmI GAATGC 1 cut(s) 2113
BsoBI CYCGRG 4 cut(s) 541, 2043, 2199, 3317
Bsp119I TTCGAA 1 cut(s) 1230
Bsp1286I GDGCHC 5 cut(s) 548, 906, 1324, 1973, 4221
Bsp13I TCCGGA 2 cut(s) 2741, 3995
Bsp1407I TGTACA 1 cut(s) 3531
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 5 cut(s) 151, 167, 381, 798, 1955
BspEI TCCGGA 2 cut(s) 2741, 3995
BspFNI CGCG 2 cut(s) 151, 2221
BspHI TCATGA 1 cut(s) 2190
BspLI GGNNCC 7 cut(s) 538, 816, 1808, 1970, 2581, 2816, 3583
BspMAI CTGCAG 1 cut(s) 3301
BspQI GCTCTTC 1 cut(s) 4226
BspT104I TTCGAA 1 cut(s) 1230
BspT107I GGYRCC 1 cut(s) 2579
BsrDI GCAATG 4 cut(s) 389, 1373, 3624, 3945
BsrFI RCCGGY 1 cut(s) 1037
BsrGI TGTACA 1 cut(s) 3531
BssAI RCCGGY 1 cut(s) 1037
BssHII GCGCGC 1 cut(s) 2219
BssNAI GTATAC 1 cut(s) 3820
BssSI CACGAG 1 cut(s) 1206
BssT1I CCWWGG 5 cut(s) 54, 2112, 2286, 2346, 3753
Bst1107I GTATAC 1 cut(s) 3820
Bst2BI CACGAG 1 cut(s) 1206
Bst2UI CCWGG 6 cut(s) 12, 209, 926, 2440, 2592, 3034
Bst6I CTCTTC 8 cut(s) 93, 165, 636, 1526, 3650, 3875, 4226, 4262
BstAUI TGTACA 1 cut(s) 3531
BstBAI YACGTR 1 cut(s) 138
BstBI TTCGAA 1 cut(s) 1230
BstC8I GCNNGC 7 cut(s) 149, 165, 1134, 1416, 2221, 2734, 3469
BstDSI CCRYGG 1 cut(s) 54
BstEII GGTNACC 2 cut(s) 1840, 2820
BstENI CCTNNNNNAGG 1 cut(s) 2896
BstF5I GGATG 7 cut(s) 642, 1030, 1089, 1095, 2653, 3013, 3285
BstFNI CGCG 2 cut(s) 151, 2221
BstHHI GCGC 3 cut(s) 2221, 2223, 2627
BstMCI CGRYCG 1 cut(s) 3849
BstMWI GCNNNNNNNGC 7 cut(s) 543, 731, 2956, 3038, 3545, 3956, 3965
BstNI CCWGG 6 cut(s) 12, 209, 926, 2440, 2592, 3034
BstNSI RCATGY 3 cut(s) 40, 2153, 2515
BstPI GGTNACC 2 cut(s) 1840, 2820
BstSCI CCNGG 9 cut(s) 10, 207, 540, 541, 924, 2438, 2590, 2920, 3032
BstSFI CTRYAG 4 cut(s) 3090, 3297, 3954, 4165
BstSNI TACGTA 1 cut(s) 138
BstUI CGCG 2 cut(s) 151, 2221
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 5 cut(s) 595, 814, 1658, 1753, 1806
BstYI RGATCY 5 cut(s) 595, 814, 1658, 1753, 1806
BstZ17I GTATAC 1 cut(s) 3820
Bsu36I CCTNAGG 1 cut(s) 2322
BsuI GTATCC 2 cut(s) 3648, 4105
BtgI CCRYGG 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 1422
BtsCI GGATG 7 cut(s) 642, 1030, 1089, 1095, 2653, 3013, 3285
BtsI GCAGTG 4 cut(s) 524, 1907, 3525, 3534
Cac8I GCNNGC 7 cut(s) 149, 165, 1134, 1416, 2221, 2734, 3469
CciI TCATGA 1 cut(s) 2190
CfoI GCGC 3 cut(s) 2221, 2223, 2627
Cfr10I RCCGGY 1 cut(s) 1037
Cfr13I GGNCC 5 cut(s) 536, 752, 1001, 1202, 3185
Cfr9I CCCGGG 1 cut(s) 541
Csp6I GTAC 9 cut(s) 1699, 2207, 2227, 2436, 3393, 3532, 3733, 3880, 4075
CviQI GTAC 9 cut(s) 1699, 2207, 2227, 2436, 3393, 3532, 3733, 3880, 4075
DraI TTTAAA 1 cut(s) 354
DraIII CACNNNGTG 1 cut(s) 1192
DriI GACNNNNNGTC 1 cut(s) 950
EaeI YGGCCR 4 cut(s) 576, 1183, 2115, 2655
Eam1104I CTCTTC 8 cut(s) 93, 165, 636, 1526, 3650, 3875, 4226, 4262
Eam1105I GACNNNNNGTC 1 cut(s) 950
EarI CTCTTC 8 cut(s) 93, 165, 636, 1526, 3650, 3875, 4226, 4262
Eco105I TACGTA 1 cut(s) 138
Eco130I CCWWGG 5 cut(s) 54, 2112, 2286, 2346, 3753
Eco24I GRGCYC 4 cut(s) 548, 906, 1324, 1973
Eco32I GATATC 1 cut(s) 2708
Eco47I GGWCC 1 cut(s) 1001
Eco57I CTGAAG 5 cut(s) 354, 1389, 2279, 2553, 2585
Eco81I CCTNAGG 1 cut(s) 2322
Eco88I CYCGRG 4 cut(s) 541, 2043, 2199, 3317
Eco91I GGTNACC 2 cut(s) 1840, 2820
EcoNI CCTNNNNNAGG 1 cut(s) 2896
EcoO109I RGGNCCY 2 cut(s) 536, 1202
EcoO65I GGTNACC 2 cut(s) 1840, 2820
EcoRI GAATTC 3 cut(s) 1223, 1537, 4020
EcoRII CCWGG 6 cut(s) 10, 207, 924, 2438, 2590, 3032
EcoRV GATATC 1 cut(s) 2708
EcoT14I CCWWGG 5 cut(s) 54, 2112, 2286, 2346, 3753
EcoT38I GRGCYC 4 cut(s) 548, 906, 1324, 1973
ErhI CCWWGG 5 cut(s) 54, 2112, 2286, 2346, 3753
Esp3I CGTCTC 1 cut(s) 937
FalI AAGNNNNNCTT 4 cut(s) 1795, 1827, 3594, 3626
FaqI GGGAC 3 cut(s) 3269, 3574, 3771
FauNDI CATATG 2 cut(s) 2098, 3748
FbaI TGATCA 3 cut(s) 1680, 3213, 3378
FblI GTMKAC 2 cut(s) 3819, 3972
FokI GGATG 7 cut(s) 649, 1037, 1076, 1082, 2660, 3020, 3292
FriOI GRGCYC 4 cut(s) 548, 906, 1324, 1973
FspBI CTAG 6 cut(s) 186, 218, 1512, 2024, 2555, 4181
GlaI GCGC 3 cut(s) 2220, 2222, 2626
GsuI CTGGAG 2 cut(s) 2394, 3305
HhaI GCGC 3 cut(s) 2221, 2223, 2627
Hin6I GCGC 3 cut(s) 2219, 2221, 2625
HinP1I GCGC 3 cut(s) 2219, 2221, 2625
HincII GTYRAC 3 cut(s) 680, 2122, 2509
HindII GTYRAC 3 cut(s) 680, 2122, 2509
HindIII AAGCTT 1 cut(s) 1500
HinfI GANTC 9 cut(s) 101, 975, 1242, 2548, 2837, 3834, 3999, 4121, 4227
HphI GGTGA 8 cut(s) 970, 1852, 2079, 2275, 2686, 3098, 3877, 4139
HpyCH4IV ACGT 4 cut(s) 22, 137, 757, 1857
HpyF10VI GCNNNNNNNGC 7 cut(s) 543, 731, 2956, 3038, 3545, 3956, 3965
HpySE526I ACGT 4 cut(s) 22, 137, 757, 1857
HspAI GCGC 3 cut(s) 2219, 2221, 2625
Kpn2I TCCGGA 2 cut(s) 2741, 3995
Ksp22I TGATCA 3 cut(s) 1680, 3213, 3378
LguI GCTCTTC 1 cut(s) 4226
LmnI GCTCC 3 cut(s) 1968, 2820, 2875
LweI GCATC 7 cut(s) 981, 1460, 1608, 3019, 3121, 3270, 4113
MaeI CTAG 6 cut(s) 186, 218, 1512, 2024, 2555, 4181
MaeII ACGT 4 cut(s) 22, 137, 757, 1857
MfeI CAATTG 5 cut(s) 1674, 1974, 2964, 3045, 4194
MflI RGATCY 5 cut(s) 595, 814, 1658, 1753, 1806
MhlI GDGCHC 5 cut(s) 548, 906, 1324, 1973, 4221
MlsI TGGCCA 1 cut(s) 1185
MluNI TGGCCA 1 cut(s) 1185
MlyI GAGTC 2 cut(s) 110, 969
MmeI TCCRAC 7 cut(s) 216, 292, 350, 979, 2123, 2893, 3231
Mox20I TGGCCA 1 cut(s) 1185
MroI TCCGGA 2 cut(s) 2741, 3995
MroXI GAANNNNTTC 2 cut(s) 49, 4176
MscI TGGCCA 1 cut(s) 1185
MseI TTAA 9 cut(s) 249, 353, 417, 807, 1457, 1577, 2396, 2487, 3612
MslI CAYNNNNRTG 6 cut(s) 53, 354, 419, 1676, 1912, 3539
Msp20I TGGCCA 1 cut(s) 1185
MspR9I CCNGG 9 cut(s) 12, 209, 542, 543, 926, 2440, 2592, 2922, 3034
MunI CAATTG 5 cut(s) 1674, 1974, 2964, 3045, 4194
Mva1269I GAATGC 1 cut(s) 2113
MvaI CCWGG 6 cut(s) 12, 209, 926, 2440, 2592, 3034
MvnI CGCG 2 cut(s) 151, 2221
MwoI GCNNNNNNNGC 7 cut(s) 543, 731, 2956, 3038, 3545, 3956, 3965
NciI CCSGG 3 cut(s) 542, 543, 2922
NcoI CCATGG 1 cut(s) 54
NdeI CATATG 2 cut(s) 2098, 3748
NlaIV GGNNCC 7 cut(s) 538, 816, 1808, 1970, 2581, 2816, 3583
NmuCI GTSAC 6 cut(s) 80, 199, 1840, 2779, 3260, 3332
NspI RCATGY 3 cut(s) 40, 2153, 2515
NspV TTCGAA 1 cut(s) 1230
OliI CACNNNNGTG 2 cut(s) 1676, 1912
PaeR7I CTCGAG 2 cut(s) 2043, 2199
PagI TCATGA 1 cut(s) 2190
PauI GCGCGC 1 cut(s) 2219
PciI ACATGT 2 cut(s) 36, 2149
PciSI GCTCTTC 1 cut(s) 4226
PctI GAATGC 1 cut(s) 2113
PdmI GAANNNNTTC 2 cut(s) 49, 4176
PfeI GAWTC 7 cut(s) 1242, 2548, 2837, 3834, 3999, 4121, 4227
PflMI CCANNNNNTGG 1 cut(s) 3020
PleI GAGTC 2 cut(s) 109, 969
PpsI GAGTC 2 cut(s) 109, 969
Ppu21I YACGTR 1 cut(s) 138
PscI ACATGT 2 cut(s) 36, 2149
PshBI ATTAAT 1 cut(s) 417
Psp6I CCWGG 6 cut(s) 10, 207, 924, 2438, 2590, 3032
PspEI GGTNACC 2 cut(s) 1840, 2820
PspGI CCWGG 6 cut(s) 10, 207, 924, 2438, 2590, 3032
PspN4I GGNNCC 7 cut(s) 538, 816, 1808, 1970, 2581, 2816, 3583
PspPI GGNCC 5 cut(s) 536, 752, 1001, 1202, 3185
PstI CTGCAG 1 cut(s) 3301
PsuI RGATCY 5 cut(s) 595, 814, 1658, 1753, 1806
PteI GCGCGC 1 cut(s) 2219
RsaI GTAC 9 cut(s) 1700, 2208, 2228, 2437, 3394, 3533, 3734, 3881, 4076
RsaNI GTAC 9 cut(s) 1699, 2207, 2227, 2436, 3393, 3532, 3733, 3880, 4075
RseI CAYNNNNRTG 6 cut(s) 53, 354, 419, 1676, 1912, 3539
SapI GCTCTTC 1 cut(s) 4226
SaqAI TTAA 9 cut(s) 249, 353, 417, 807, 1457, 1577, 2396, 2487, 3612
Sau96I GGNCC 5 cut(s) 536, 752, 1001, 1202, 3185
ScaI AGTACT 1 cut(s) 3394
SchI GAGTC 2 cut(s) 110, 969
ScrFI CCNGG 9 cut(s) 12, 209, 542, 543, 926, 2440, 2592, 2922, 3034
SduI GDGCHC 5 cut(s) 548, 906, 1324, 1973, 4221
SfaNI GCATC 7 cut(s) 981, 1460, 1608, 3019, 3121, 3270, 4113
SfcI CTRYAG 4 cut(s) 3090, 3297, 3954, 4165
Sfr274I CTCGAG 2 cut(s) 2043, 2199
SfuI TTCGAA 1 cut(s) 1230
SinI GGWCC 1 cut(s) 1001
SlaI CTCGAG 2 cut(s) 2043, 2199
SmaI CCCGGG 1 cut(s) 543
SmiI ATTTAAAT 1 cut(s) 354
SmiMI CAYNNNNRTG 6 cut(s) 53, 354, 419, 1676, 1912, 3539
SmlI CTYRAG 3 cut(s) 290, 2043, 2199
SmoI CTYRAG 3 cut(s) 290, 2043, 2199
SnaBI TACGTA 1 cut(s) 138
SsiI CCGC 5 cut(s) 151, 167, 381, 798, 1955
SspI AATATT 2 cut(s) 3000, 3567
SspMI CTAG 6 cut(s) 186, 218, 1512, 2024, 2555, 4181
StyD4I CCNGG 9 cut(s) 10, 207, 540, 541, 924, 2438, 2590, 2920, 3032
StyI CCWWGG 5 cut(s) 54, 2112, 2286, 2346, 3753
SwaI ATTTAAAT 1 cut(s) 354
TaiI ACGT 4 cut(s) 25, 140, 760, 1860
TatI WGTACW 4 cut(s) 3392, 3531, 3732, 3879
TauI GCSGC 2 cut(s) 800, 1958
TfiI GAWTC 7 cut(s) 1242, 2548, 2837, 3834, 3999, 4121, 4227
Tru1I TTAA 9 cut(s) 249, 353, 417, 807, 1457, 1577, 2396, 2487, 3612
Tru9I TTAA 9 cut(s) 249, 353, 417, 807, 1457, 1577, 2396, 2487, 3612
TseFI GTSAC 6 cut(s) 80, 199, 1840, 2779, 3260, 3332
Tsp45I GTSAC 6 cut(s) 80, 199, 1840, 2779, 3260, 3332
TspGWI ACGGA 4 cut(s) 642, 1413, 1624, 4092
TspMI CCCGGG 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 3020
VpaK11BI GGWCC 1 cut(s) 1001
VspI ATTAAT 1 cut(s) 417
XagI CCTNNNNNAGG 1 cut(s) 2896
XapI RAATTY 8 cut(s) 1072, 1223, 1361, 1518, 1537, 2126, 3406, 4020
XbaI TCTAGA 1 cut(s) 1511
XceI RCATGY 3 cut(s) 40, 2153, 2515
XcmI CCANNNNNNNNNTGG 6 cut(s) 565, 1100, 1931, 2220, 2344, 3001
XhoI CTCGAG 2 cut(s) 2043, 2199
XmaI CCCGGG 1 cut(s) 541
XmiI GTMKAC 2 cut(s) 3819, 3972
XmnI GAANNNNTTC 2 cut(s) 49, 4176
XspI CTAG 6 cut(s) 186, 218, 1512, 2024, 2555, 4181
ZrmI AGTACT 1 cut(s) 3394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.