Rroxscaffold_7G00169230
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000493
Physical Location & Seq
Reverse (-)
9940667 .. 9941587
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169230.1

Sequence Viewer

Length: 711 bp
ATGGGTGCTATGTATTCTGCTATTCTCTTCATTGGGCCACAAAATACCTCAACGGTGCAGCCAGTTGTAGGCATTGAGCGAATAGTCTTTTACAGAGAAAGGGCTACGGAATGTACTCGCCTTGCCATATGCCTTTGGACAGGTATGTCACCAAGATCACCTTATGAAATGCTCAATGAATCCAAGCCACGAATATATGTTGGCATTGAGCTCCCATACACTTTGATCCAAACTATCATATATGTGGTTATATCATACACGATGATCGGATTTGAGTGGACGGTCGGCAAGTTCTTTTGGCAACTATTCTTCATGTACTTCACTTACTTATACTTCACCTTATATGGCATGATGAGTGTGGCCATTACTCCCAACATTGCCGTTTCCGCTGTAGTTTCCACAGCATTCAACCCGCTATGGAACGTTTTTTCAGGATTTATCATTCCCAAATCGAGAATTCCAATATGGTGGAGATGGTTCTACTGGTCGTGCCCGGTCTCTTGGAGCTTGTACGGAATGATTGGTTCGCAGTTTGGAGGCATTGAGGACAGGCTTGATTCCGGCGAAACTGTGGACGCTTTTACCGGGACTTATTTTGGGTATAGAGAAGACTTTACAAGTGTTGTTGCAATAGTGCTTGTAGCTTTTTCAGTGCTCTTTGGATCCGTCTTTGCCTTTTCAATCAAAGCCTTTAACTTTCAAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

236

Amino Acids

27.16

Weight (kDa)

8.38

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 66 - 178 8.4e-27 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 145
AciI CCGC 2 cut(s) 387, 413
AclI AACGTT 1 cut(s) 423
AclWI GGATC 3 cut(s) 220, 657, 670
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 1 cut(s) 456
AfaI GTAC 3 cut(s) 115, 317, 512
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 3 cut(s) 409, 681, 701
AluBI AGCT 3 cut(s) 211, 507, 644
AluI AGCT 3 cut(s) 211, 507, 644
Alw21I GWGCWC 2 cut(s) 213, 657
Alw26I GTCTC 1 cut(s) 502
AlwI GGATC 3 cut(s) 220, 657, 670
AoxI GGCC 2 cut(s) 35, 360
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 35
AsuC2I CCSGG 2 cut(s) 494, 586
AsuHPI GGTGA 3 cut(s) 141, 150, 328
BaeGI GKGCMC 1 cut(s) 494
BalI TGGCCA 1 cut(s) 362
BamHI GGATCC 1 cut(s) 662
BanII GRGCYC 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 615
Bbv12I GWGCWC 2 cut(s) 213, 657
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 468
BceAI ACGGC 1 cut(s) 365
BcnI CCSGG 2 cut(s) 494, 586
BcoDI GTCTC 1 cut(s) 502
BfmI CTRYAG 1 cut(s) 390
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 2 cut(s) 494, 586
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 664
BmrFI CCNGG 2 cut(s) 494, 586
BpiI GAAGAC 1 cut(s) 615
BpuMI CCSGG 2 cut(s) 494, 586
BsaI GGTCTC 1 cut(s) 502
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 62, 488
Bse3DI GCAATG 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMI GCAATG 1 cut(s) 375
BseNI ACTGG 2 cut(s) 62, 488
BseSI GKGCMC 1 cut(s) 494
BseXI GCAGC 1 cut(s) 70
BsgI GTGCAG 1 cut(s) 77
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 2 cut(s) 37, 362
BsiEI CGRYCG 1 cut(s) 285
BsiHKAI GWGCWC 2 cut(s) 213, 657
BsiSI CCGG 3 cut(s) 494, 561, 585
BslFI GGGAC 1 cut(s) 601
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 502
BsmFI GGGAC 1 cut(s) 601
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 2 cut(s) 37, 362
Bso31I GGTCTC 1 cut(s) 502
Bsp1286I GDGCHC 3 cut(s) 213, 494, 657
Bsp143I GATC 4 cut(s) 155, 225, 264, 662
BspACI CCGC 2 cut(s) 387, 413
BspANI GGCC 2 cut(s) 37, 362
BspLI GGNNCC 1 cut(s) 664
BspPI GGATC 3 cut(s) 220, 657, 670
BspTNI GGTCTC 1 cut(s) 502
BsrDI GCAATG 1 cut(s) 375
BsrI ACTGG 2 cut(s) 62, 488
BssMI GATC 4 cut(s) 155, 225, 264, 662
Bst4CI ACNGT 3 cut(s) 55, 283, 571
Bst6I CTCTTC 1 cut(s) 32
BstKTI GATC 4 cut(s) 158, 228, 267, 665
BstMAI GTCTC 1 cut(s) 502
BstMBI GATC 4 cut(s) 155, 225, 264, 662
BstMCI CGRYCG 1 cut(s) 285
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstSCI CCNGG 2 cut(s) 492, 584
BstSFI CTRYAG 1 cut(s) 390
BstSLI GKGCMC 1 cut(s) 494
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 615
BstX2I RGATCY 1 cut(s) 662
BstXI CCANNNNNNTGG 1 cut(s) 468
BstYI RGATCY 1 cut(s) 662
BsuRI GGCC 2 cut(s) 37, 362
BtsIMutI CAGTG 1 cut(s) 657
Cfr13I GGNCC 1 cut(s) 35
CseI GACGC 1 cut(s) 584
Csp6I GTAC 3 cut(s) 114, 316, 511
CviAII CATG 2 cut(s) 313, 349
CviQI GTAC 3 cut(s) 114, 316, 511
DpnI GATC 4 cut(s) 157, 227, 266, 664
DpnII GATC 4 cut(s) 155, 225, 264, 662
DrdI GACNNNNNNGTC 1 cut(s) 145
DseDI GACNNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 502
Eco53kI GAGCTC 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 211
EcoRI GAATTC 1 cut(s) 456
EcoT38I GRGCYC 1 cut(s) 213
FaeI CATG 2 cut(s) 316, 352
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FaqI GGGAC 1 cut(s) 601
FatI CATG 2 cut(s) 312, 348
FauI CCCGC 1 cut(s) 420
FauNDI CATATG 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 59
HaeIII GGCC 2 cut(s) 37, 362
HapII CCGG 3 cut(s) 494, 561, 585
HgaI GACGC 1 cut(s) 584
Hin1II CATG 2 cut(s) 316, 352
HinfI GANTC 2 cut(s) 179, 557
HpaII CCGG 3 cut(s) 494, 561, 585
HphI GGTGA 3 cut(s) 141, 150, 328
Hpy166II GTNNAC 2 cut(s) 279, 574
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 2 cut(s) 432, 453
Hpy8I GTNNAC 2 cut(s) 279, 574
HpyCH4III ACNGT 3 cut(s) 55, 283, 571
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 2 cut(s) 58, 629
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 2 cut(s) 316, 352
Kzo9I GATC 4 cut(s) 155, 225, 264, 662
LmnI GCTCC 2 cut(s) 216, 504
LpnPI CCDG 8 cut(s) 75, 126, 417, 469, 507, 535, 574, 598
Lsp1109I GCAGC 1 cut(s) 70
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 1 cut(s) 147
MalI GATC 4 cut(s) 157, 227, 266, 664
MboI GATC 4 cut(s) 155, 225, 264, 662
MboII GAAGA 3 cut(s) 19, 301, 620
MflI RGATCY 1 cut(s) 662
MhlI GDGCHC 3 cut(s) 213, 494, 657
MlsI TGGCCA 1 cut(s) 362
MluCI AATT 1 cut(s) 456
MluNI TGGCCA 1 cut(s) 362
MnlI CCTC 3 cut(s) 58, 530, 538
Mox20I TGGCCA 1 cut(s) 362
MscI TGGCCA 1 cut(s) 362
MseI TTAA 1 cut(s) 693
MslI CAYNNNNRTG 1 cut(s) 242
Msp20I TGGCCA 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 3 cut(s) 494, 561, 585
MspR9I CCNGG 2 cut(s) 494, 586
Mva1269I GAATGC 1 cut(s) 404
MwoI GCNNNNNNNGC 1 cut(s) 386
NciI CCSGG 2 cut(s) 494, 586
NdeI CATATG 1 cut(s) 128
NdeII GATC 4 cut(s) 155, 225, 264, 662
NlaIII CATG 2 cut(s) 316, 352
NlaIV GGNNCC 1 cut(s) 664
NmuCI GTSAC 1 cut(s) 147
PctI GAATGC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 179, 557
PkrI GCNGC 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 213
Psp1406I AACGTT 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 664
PspPI GGNCC 1 cut(s) 35
PsuI RGATCY 1 cut(s) 662
RsaI GTAC 3 cut(s) 115, 317, 512
RsaNI GTAC 3 cut(s) 114, 316, 511
RseI CAYNNNNRTG 1 cut(s) 242
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 693
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 4 cut(s) 155, 225, 264, 662
Sau96I GGNCC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 494, 586
SduI GDGCHC 3 cut(s) 213, 494, 657
SetI ASST 8 cut(s) 50, 145, 163, 213, 341, 426, 509, 646
SfcI CTRYAG 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 1 cut(s) 456
SsiI CCGC 2 cut(s) 387, 413
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 2 cut(s) 492, 584
TaaI ACNGT 3 cut(s) 55, 283, 571
TaiI ACGT 1 cut(s) 426
TaqI TCGA 1 cut(s) 452
TasI AATT 1 cut(s) 456
TatI WGTACW 2 cut(s) 113, 315
TfiI GAWTC 2 cut(s) 179, 557
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TscAI CASTG 1 cut(s) 657
TseFI GTSAC 1 cut(s) 147
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 147
TspDTI ATGAA 4 cut(s) 19, 180, 192, 301
TspGWI ACGGA 3 cut(s) 122, 528, 655
TspRI CASTG 1 cut(s) 657
XapI RAATTY 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.