Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000493

Physical Location & Seq

Genomic Coordinates Reverse (-)

23355590 .. 23359674

Gene Structure 4085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48531

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGCTCCATGTTCATTGCTTGGAACTTGACCATATTGTGGAAGAACTGGAGAAAATTGTTGTTGTCAATCTTCTTCAGCACCGATCAATAATATCTCTCATTGGAGATGTGCAGAAATCATCACTAATATTAGAGAAGGTGTTGTACTGTGTTTTGCCAAGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004072 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016774 GO:0019202 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

55

Amino Acids

6.26

Weight (kDa)

5.66

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000493)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica	MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica	Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis	pycom02g02690 pycom08g11890
rosa_chinensis	RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata	RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora	Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii	Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa	Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha	Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana	Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	146, 163
AfiI	CCNNNNNNNGG	1 cut(s)	37
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
BmcAI	AGTACT	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	13
BseNI	ACTGG	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	145, 162
CviAII	CATG	1 cut(s)	8
CviQI	GTAC	2 cut(s)	145, 162
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	59
FaeI	CATG	1 cut(s)	11
FaiI	YATR	2 cut(s)	9, 33
FatI	CATG	1 cut(s)	7
FspEI	CC	8 cut(s)	5, 20, 23, 32, 44, 87, 95, 122
GsuI	CTGGAG	1 cut(s)	68
Hin1II	CATG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	112
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	11
Kzo9I	GATC	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	1 cut(s)	32
MalI	GATC	1 cut(s)	85
MboI	GATC	1 cut(s)	83
MboII	GAAGA	3 cut(s)	53, 62, 65
MluCI	AATT	1 cut(s)	54
NdeII	GATC	1 cut(s)	83
NlaIII	CATG	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	37
RsaI	GTAC	2 cut(s)	146, 163
RsaNI	GTAC	2 cut(s)	145, 162
Sau3AI	GATC	1 cut(s)	83
ScaI	AGTACT	1 cut(s)	163
SetI	ASST	1 cut(s)	141
SgeI	CNNG	4 cut(s)	20, 31, 38, 59
Sse9I	AATT	1 cut(s)	54
SspI	AATATT	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	149
TasI	AATT	1 cut(s)	54
TatI	WGTACW	2 cut(s)	144, 161
Van91I	CCANNNNNTGG	1 cut(s)	37
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.