FvH4_2g35950

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000237
Physical Location & Seq
Forward (+)
26428315 .. 26429577
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35950.t1

Sequence Viewer

Length: 1116 bp
ATGGAGGTGGTGGCCAGTCTAGAAGACCTCCTTACAGAAATTCTTGTGCGGGTGCCGGCTCGACCTCTGATCCGATTCAAATGTGTCTCCAAACAGTGGCTCTCTCTTATCTCCGATCCCAAATTCTGTCACCGCCACACCCTCCAAAACCCCCGCTCCTCCGTCTCTGCTGTCTTTCCGGATCGAATTCCGTCATCCAGATCCACTGCCGTATCTTTCATCCCTCTTGATGATCTCGATCATGACACTAGAACTAACCAAAGTTCAGCCAACTGCAATCCTCTTAACTTGGTTCCAAACTTCCAGTTTCCAAACCTGCATGATGAGATCAACATCATCCATTCCTGTAATGGCCTCTTCTTGTGTCGTGGTCGCCTCGAAAAAGGAGATCAACGGTACTACTATGTTCTCAATCCCACTACCAACCAGTTTTCCACACTGATTCCTCCTGCTGCTACTACTTCTGGTCAATCTTGCAATATCATCAATCTGGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGACTAAAAGTTGGAGACATGTCGATTCCACTTTCAGTATCGCAGATAGTCCCAATTTATCTGAAGGGGTATACTGCAATGGCGCACTTCATTGGGTAAAGGGGCGGGATAAAAAGCTCACCTACTATCACATAGATGATGATCGTGTCGGACATGTCGATCAACCTGCCGGACAGATCTCTCATCCTAACAGGAATCTTGTTGATTTGTGTAACTCCTGGCGTCTTCAAGAATCTCATTGTGGCAGCCATTTGCATCTTATTGATATCTACTCCTCACGTATCGAAGTGTCGAAGATGAAGAGAGACTACTCTGGTTGGTTTCTTAAGTACACTATTAATCTTGATGATCGCATTTTCACTTCCTTCTGGAACTTTGTTGTTCTCTTTCTTACTCCAGAGGAAACTGAAGGAGATGAAAGTTCATCTTTGTTACTACATATTCCGGGTCAAGTCATCTCGTATAATCTCAAAAGCAAGATCTCTAAATCTTTTCGGCTAACTCCTAGGCAAGGTACTGATGATTCCGAACTACGTGTTAAAACAGAACGGAATTTTCGATATATGGAGAGTTTGGCTTGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

372

Amino Acids

42.39

Weight (kDa)

7.63

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 8 - 44 9.2e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 324, 703
AccB1I GGYRCC 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 96
AccBSI CCGCTC 1 cut(s) 156
AccI GTMKAC 1 cut(s) 600
AccIII TCCGGA 1 cut(s) 178
AciI CCGC 4 cut(s) 49, 133, 154, 634
AclWI GGATC 4 cut(s) 64, 110, 189, 195
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 4 cut(s) 39, 122, 186, 1081
AcuI CTGAAG 2 cut(s) 612, 957
AcyI GRCGYC 1 cut(s) 751
AfaI GTAC 3 cut(s) 398, 860, 1045
AfiI CCNNNNNNNGG 2 cut(s) 96, 1040
AflII CTTAAG 1 cut(s) 854
AflIII ACRYGT 3 cut(s) 547, 682, 1063
AgsI TTSAA 2 cut(s) 79, 758
AjnI CCWGG 1 cut(s) 746
AluBI AGCT 1 cut(s) 646
AluI AGCT 1 cut(s) 646
Alw26I GTCTC 4 cut(s) 91, 169, 538, 828
AlwI GGATC 4 cut(s) 64, 110, 189, 195
Aor13HI TCCGGA 1 cut(s) 178
AoxI GGCC 2 cut(s) 12, 352
ApeKI GCWGC 2 cut(s) 452, 774
ApoI RAATTY 4 cut(s) 39, 122, 186, 1081
AseI ATTAAT 1 cut(s) 867
AspA2I CCTAGG 1 cut(s) 1034
AspLEI GCGC 1 cut(s) 614
AsuC2I CCSGG 1 cut(s) 975
AsuHPI GGTGA 3 cut(s) 122, 510, 640
AvrII CCTAGG 1 cut(s) 1034
BaeI ACNNNNGTAYC 2 cut(s) 195, 228
BalI TGGCCA 1 cut(s) 14
BanI GGYRCC 1 cut(s) 52
BarI GAAGNNNNNNTAC 2 cut(s) 821, 853
BbsI GAAGAC 2 cut(s) 30, 746
BbvI GCAGC 2 cut(s) 439, 786
BceAI ACGGC 1 cut(s) 194
BcgI CGANNNNNNTGC 2 cut(s) 677, 711
BciT130I CCWGG 1 cut(s) 748
BcnI CCSGG 1 cut(s) 975
BcoDI GTCTC 4 cut(s) 91, 169, 538, 828
BfaI CTAG 3 cut(s) 20, 249, 1035
BfrI CTTAAG 1 cut(s) 854
BfuAI ACCTGC 2 cut(s) 324, 703
BglII AGATCT 2 cut(s) 705, 1008
BisI GCNGC 2 cut(s) 453, 775
BlnI CCTAGG 1 cut(s) 1034
BlsI GCNGC 2 cut(s) 454, 776
Bme1390I CCNGG 2 cut(s) 748, 975
BmiI GGNNCC 2 cut(s) 54, 294
BmrFI CCNGG 2 cut(s) 748, 975
BmsI GCATC 1 cut(s) 793
BpiI GAAGAC 2 cut(s) 30, 746
BpmI CTGGAG 1 cut(s) 909
BpuMI CCSGG 1 cut(s) 975
BsaAI YACGTR 2 cut(s) 809, 1064
BsaBI GATNNNNATC 3 cut(s) 237, 332, 669
BsaHI GRCGYC 1 cut(s) 751
BsaJI CCNNGG 1 cut(s) 1034
BsaWI WCCGGW 1 cut(s) 178
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 1040
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 3 cut(s) 15, 304, 427
Bse3DI GCAATG 1 cut(s) 613
Bse8I GATNNNNATC 3 cut(s) 237, 332, 669
BseAI TCCGGA 1 cut(s) 178
BseBI CCWGG 1 cut(s) 748
BseDI CCNNGG 1 cut(s) 1034
BseGI GGATG 4 cut(s) 194, 219, 336, 712
BseJI GATNNNNATC 3 cut(s) 237, 332, 669
BseLI CCNNNNNNNGG 2 cut(s) 96, 1040
BseMI GCAATG 1 cut(s) 613
BseNI ACTGG 3 cut(s) 15, 304, 427
BseRI GAGGAG 2 cut(s) 148, 793
BseXI GCAGC 2 cut(s) 439, 786
BshFI GGCC 2 cut(s) 14, 354
BshNI GGYRCC 1 cut(s) 52
BsiSI CCGG 4 cut(s) 56, 179, 699, 974
BslFI GGGAC 1 cut(s) 564
BslI CCNNNNNNNGG 2 cut(s) 96, 1040
BsmAI GTCTC 4 cut(s) 91, 169, 538, 828
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 564
BsnI GGCC 2 cut(s) 14, 354
Bsp13I TCCGGA 1 cut(s) 178
BspACI CCGC 4 cut(s) 49, 133, 154, 634
BspANI GGCC 2 cut(s) 14, 354
BspEI TCCGGA 1 cut(s) 178
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 54, 294
BspMI ACCTGC 2 cut(s) 324, 703
BspPI GGATC 4 cut(s) 64, 110, 189, 195
BspT107I GGYRCC 1 cut(s) 52
BspTI CTTAAG 1 cut(s) 854
BsrBI CCGCTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 613
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 3 cut(s) 15, 304, 427
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 1034
BssNAI GTATAC 1 cut(s) 601
BssNI GRCGYC 1 cut(s) 751
BssT1I CCWWGG 1 cut(s) 1034
Bst1107I GTATAC 1 cut(s) 601
Bst2UI CCWGG 1 cut(s) 748
Bst4CI ACNGT 2 cut(s) 96, 396
Bst6I CTCTTC 2 cut(s) 362, 824
BstACI GRCGYC 1 cut(s) 751
BstAFI CTTAAG 1 cut(s) 854
BstBAI YACGTR 2 cut(s) 809, 1064
BstC8I GCNNGC 1 cut(s) 57
BstENI CCTNNNNNAGG 1 cut(s) 1038
BstF5I GGATG 4 cut(s) 194, 219, 336, 712
BstHHI GCGC 1 cut(s) 614
BstMAI GTCTC 4 cut(s) 91, 169, 538, 828
BstNI CCWGG 1 cut(s) 748
BstNSI RCATGY 2 cut(s) 551, 686
BstSCI CCNGG 2 cut(s) 746, 973
BstV1I GCAGC 2 cut(s) 439, 786
BstV2I GAAGAC 2 cut(s) 30, 746
BstX2I RGATCY 3 cut(s) 200, 705, 1008
BstYI RGATCY 3 cut(s) 200, 705, 1008
BstZ17I GTATAC 1 cut(s) 601
BsuRI GGCC 2 cut(s) 14, 354
BtsCI GGATG 4 cut(s) 194, 219, 336, 712
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 3 cut(s) 101, 204, 437
BveI ACCTGC 2 cut(s) 324, 703
Cac8I GCNNGC 1 cut(s) 57
CciI TCATGA 1 cut(s) 241
CfoI GCGC 1 cut(s) 614
Cfr10I RCCGGY 1 cut(s) 55
CseI GACGC 1 cut(s) 740
Csp6I GTAC 3 cut(s) 397, 859, 1044
CviAII CATG 4 cut(s) 242, 320, 548, 683
CviQI GTAC 3 cut(s) 397, 859, 1044
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 362, 824
EarI CTCTTC 2 cut(s) 362, 824
Eco130I CCWWGG 1 cut(s) 1034
Eco32I GATATC 1 cut(s) 796
Eco57I CTGAAG 2 cut(s) 612, 957
EcoNI CCTNNNNNAGG 1 cut(s) 1038
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 746
EcoRV GATATC 1 cut(s) 796
EcoT14I CCWWGG 1 cut(s) 1034
ErhI CCWWGG 1 cut(s) 1034
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 4 cut(s) 245, 323, 551, 686
FalI AAGNNNNNCTT 4 cut(s) 15, 47, 940, 972
FaqI GGGAC 1 cut(s) 564
FatI CATG 4 cut(s) 241, 319, 547, 682
FauI CCCGC 3 cut(s) 42, 161, 627
FblI GTMKAC 1 cut(s) 600
Fnu4HI GCNGC 2 cut(s) 453, 775
FokI GGATG 4 cut(s) 181, 206, 323, 699
Fsp4HI GCNGC 2 cut(s) 453, 775
FspBI CTAG 3 cut(s) 20, 249, 1035
GlaI GCGC 1 cut(s) 613
GluI GCNGC 2 cut(s) 453, 775
GsuI CTGGAG 1 cut(s) 909
HaeIII GGCC 2 cut(s) 14, 354
HapII CCGG 4 cut(s) 56, 179, 699, 974
HgaI GACGC 1 cut(s) 740
HhaI GCGC 1 cut(s) 614
Hin1I GRCGYC 1 cut(s) 751
Hin1II CATG 4 cut(s) 245, 323, 551, 686
Hin6I GCGC 1 cut(s) 612
HinP1I GCGC 1 cut(s) 612
HinfI GANTC 6 cut(s) 75, 442, 554, 724, 761, 1052
HpaII CCGG 4 cut(s) 56, 179, 699, 974
HphI GGTGA 3 cut(s) 122, 510, 640
Hpy166II GTNNAC 2 cut(s) 601, 861
Hpy188I TCNGA 6 cut(s) 69, 74, 115, 592, 680, 1057
Hpy8I GTNNAC 2 cut(s) 601, 861
HpyAV CCTTC 4 cut(s) 519, 587, 904, 932
HpyCH4III ACNGT 2 cut(s) 96, 396
HpyCH4IV ACGT 2 cut(s) 808, 1063
HpyCH4V TGCA 5 cut(s) 276, 319, 477, 606, 784
HpySE526I ACGT 2 cut(s) 808, 1063
Hsp92I GRCGYC 1 cut(s) 751
Hsp92II CATG 4 cut(s) 245, 323, 551, 686
HspAI GCGC 1 cut(s) 612
Kpn2I TCCGGA 1 cut(s) 178
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 2 cut(s) 439, 786
LweI GCATC 1 cut(s) 793
MaeI CTAG 3 cut(s) 20, 249, 1035
MaeII ACGT 2 cut(s) 808, 1063
MaeIII GTNAC 3 cut(s) 128, 740, 960
MbiI CCGCTC 1 cut(s) 156
MboII GAAGA 5 cut(s) 35, 349, 746, 835, 841
MflI RGATCY 3 cut(s) 200, 705, 1008
MlsI TGGCCA 1 cut(s) 14
MluCI AATT 5 cut(s) 39, 122, 186, 583, 1081
MluNI TGGCCA 1 cut(s) 14
MmeI TCCRAC 2 cut(s) 521, 658
Mox20I TGGCCA 1 cut(s) 14
MroI TCCGGA 1 cut(s) 178
MroNI GCCGGC 1 cut(s) 55
MscI TGGCCA 1 cut(s) 14
MseI TTAA 4 cut(s) 285, 855, 867, 1068
MslI CAYNNNNRTG 1 cut(s) 663
Msp20I TGGCCA 1 cut(s) 14
MspCI CTTAAG 1 cut(s) 854
MspI CCGG 4 cut(s) 56, 179, 699, 974
MspR9I CCNGG 2 cut(s) 748, 975
MvaI CCWGG 1 cut(s) 748
NaeI GCCGGC 1 cut(s) 57
NciI CCSGG 1 cut(s) 975
NgoMIV GCCGGC 1 cut(s) 55
NlaIII CATG 4 cut(s) 245, 323, 551, 686
NlaIV GGNNCC 2 cut(s) 54, 294
NmuCI GTSAC 1 cut(s) 128
NspI RCATGY 2 cut(s) 551, 686
PagI TCATGA 1 cut(s) 241
PciI ACATGT 2 cut(s) 547, 682
PcsI WCGNNNNNNNCGW 2 cut(s) 684, 1084
PdiI GCCGGC 1 cut(s) 57
PfeI GAWTC 6 cut(s) 75, 442, 554, 724, 761, 1052
PflMI CCANNNNNTGG 1 cut(s) 96
PkrI GCNGC 2 cut(s) 454, 776
Ppu21I YACGTR 2 cut(s) 809, 1064
PscI ACATGT 2 cut(s) 547, 682
PshBI ATTAAT 1 cut(s) 867
Psp6I CCWGG 1 cut(s) 746
PspGI CCWGG 1 cut(s) 746
PspN4I GGNNCC 2 cut(s) 54, 294
PsuI RGATCY 3 cut(s) 200, 705, 1008
RsaI GTAC 3 cut(s) 398, 860, 1045
RsaNI GTAC 3 cut(s) 397, 859, 1044
RseI CAYNNNNRTG 1 cut(s) 663
SaqAI TTAA 4 cut(s) 285, 855, 867, 1068
SatI GCNGC 2 cut(s) 453, 775
ScrFI CCNGG 2 cut(s) 748, 975
SfaNI GCATC 1 cut(s) 793
SmiMI CAYNNNNRTG 1 cut(s) 663
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
Sse9I AATT 5 cut(s) 39, 122, 186, 583, 1081
SsiI CCGC 4 cut(s) 49, 133, 154, 634
SspMI CTAG 3 cut(s) 20, 249, 1035
StyD4I CCNGG 2 cut(s) 746, 973
StyI CCWWGG 1 cut(s) 1034
TaaI ACNGT 2 cut(s) 96, 396
TaiI ACGT 2 cut(s) 811, 1066
TaqI TCGA 9 cut(s) 61, 184, 237, 378, 552, 687, 813, 821, 1087
TasI AATT 5 cut(s) 39, 122, 186, 583, 1081
TatI WGTACW 1 cut(s) 858
TfiI GAWTC 6 cut(s) 75, 442, 554, 724, 761, 1052
Tru1I TTAA 4 cut(s) 285, 855, 867, 1068
Tru9I TTAA 4 cut(s) 285, 855, 867, 1068
TscAI CASTG 3 cut(s) 101, 211, 444
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 2 cut(s) 452, 774
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 5 cut(s) 208, 608, 842, 942, 960
TspGWI ACGGA 3 cut(s) 151, 180, 1093
TspRI CASTG 3 cut(s) 101, 211, 444
Van91I CCANNNNNTGG 1 cut(s) 96
Vha464I CTTAAG 1 cut(s) 854
VspI ATTAAT 1 cut(s) 867
XagI CCTNNNNNAGG 1 cut(s) 1038
XapI RAATTY 4 cut(s) 39, 122, 186, 1081
XbaI TCTAGA 1 cut(s) 19
XceI RCATGY 2 cut(s) 551, 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XmaJI CCTAGG 1 cut(s) 1034
XmiI GTMKAC 1 cut(s) 600
XspI CTAG 3 cut(s) 20, 249, 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.