Rroxscaffold_5G00381750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000237
Physical Location & Seq
Forward (+)
61619982 .. 61627051
7070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00381750.1

Sequence Viewer

Length: 159 bp
ATGGAGAGTACTATGTTTGTTTGGCGGCAAAGTTTATATAATTTATTTGGGCATTCAGGTTGGATTTATGAGATGTATGGATGCACAAGCCTCACCGTTCTATTTTCTATTGCTGGGAAGTATAGCAGCTGGCTTATCAAATACTTGGAAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

6.08

Weight (kDa)

6.52

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 25
AfaI GTAC 1 cut(s) 10
AluBI AGCT 2 cut(s) 129, 152
AluI AGCT 2 cut(s) 129, 152
ApeKI GCWGC 2 cut(s) 126, 152
AsuHPI GGTGA 1 cut(s) 85
BbvI GCAGC 2 cut(s) 138, 139
BisI GCNGC 3 cut(s) 26, 127, 153
BlsI GCNGC 3 cut(s) 27, 128, 154
BmcAI AGTACT 1 cut(s) 10
BmsI GCATC 1 cut(s) 71
BseGI GGATG 1 cut(s) 86
BseXI GCAGC 2 cut(s) 138, 139
BseYI CCCAGC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 52
BspACI CCGC 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 131
BstF5I GGATG 1 cut(s) 86
BstV1I GCAGC 2 cut(s) 138, 139
BtsCI GGATG 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 9
CviJI RGCY 4 cut(s) 90, 129, 133, 152
CviKI_1 RGCY 4 cut(s) 90, 129, 133, 152
CviQI GTAC 1 cut(s) 9
FaiI YATR 6 cut(s) 14, 37, 39, 69, 78, 123
Fnu4HI GCNGC 3 cut(s) 26, 127, 153
FokI GGATG 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 26, 127, 153
GluI GCNGC 3 cut(s) 26, 127, 153
GsaI CCCAGC 1 cut(s) 117
HphI GGTGA 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 84
LpnPI CCDG 3 cut(s) 42, 99, 115
Lsp1109I GCAGC 2 cut(s) 138, 139
LweI GCATC 1 cut(s) 71
MluCI AATT 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 52
PctI GAATGC 1 cut(s) 52
PkrI GCNGC 3 cut(s) 27, 128, 154
PspFI CCCAGC 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 129
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SatI GCNGC 3 cut(s) 26, 127, 153
ScaI AGTACT 1 cut(s) 10
SetI ASST 3 cut(s) 61, 131, 154
SfaNI GCATC 1 cut(s) 71
SgeI CNNG 4 cut(s) 69, 99, 126, 142
Sse9I AATT 1 cut(s) 40
SsiI CCGC 1 cut(s) 25
TaaI ACNGT 1 cut(s) 97
TasI AATT 1 cut(s) 40
TatI WGTACW 1 cut(s) 8
TauI GCSGC 1 cut(s) 28
TseI GCWGC 2 cut(s) 126, 152
ZrmI AGTACT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.