pycom16g20090

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000237
Physical Location & Seq
Forward (+)
17638401 .. 17639125
725 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g20090.2

Sequence Viewer

Length: 516 bp
ATGTTCATAGACGAAGAAGCCACGAAAATCTGCACAAGCCTTCTCCTCTCTGCAAAACTTAATGCTTTCCAAGTTATAGGTAATTGGAACAAAAGAGCGTTCTTTGTGAAGATTGCCAAGACCAAATCCTTGTGCAGCATGAGTTCTATACCCGAGCTTATCAACACAGAGCCTCCAGATTACAATGTTTTTCGCAAGCGGAAGTACAGATATTTCTGGGTGTCACGCGGCCATTTGCACCTCATTGAAATTTATAGGGCTTGCCTTGCTCAAGTTGATGGGAGGGGCTACTCTGGCTGGTTTGTCAAGTACCATGTTGATCTTGATACATTAATGACGGTCGAGCTTCCTGAGATGGTTCCGCAACATAATCTTGATGATCCTAGTGAAGAAAATTGGTACTCAGCATTTGTTGTTCTCTTTCTTGCTCGAGAAGAAAACGAAGAGGAGACATCTATGTTCTTGCTTATTCCTTGTAAGGTCGTCTCTTATAATCTTTTAGGCAGAACCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

172

Amino Acids

19.94

Weight (kDa)

6.09

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 492
AccII CGCG 1 cut(s) 228
AciI CCGC 3 cut(s) 199, 228, 362
AclWI GGATC 1 cut(s) 374
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 1 cut(s) 249
AfaI GTAC 3 cut(s) 206, 311, 401
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 2 cut(s) 157, 346
AluI AGCT 2 cut(s) 157, 346
Alw26I GTCTC 2 cut(s) 443, 490
AlwI GGATC 1 cut(s) 374
AlwNI CAGNNNCTG 1 cut(s) 510
Ama87I CYCGRG 2 cut(s) 152, 429
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 249
AseI ATTAAT 1 cut(s) 332
AvaI CYCGRG 2 cut(s) 152, 429
BbvI GCAGC 1 cut(s) 147
BccI CCATC 2 cut(s) 272, 349
BcoDI GTCTC 2 cut(s) 443, 490
BfaI CTAG 1 cut(s) 384
BisI GCNGC 2 cut(s) 136, 229
BlsI GCNGC 2 cut(s) 137, 230
BmeT110I CYCGRG 2 cut(s) 152, 429
BmiI GGNNCC 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
BseMII CTCAG 2 cut(s) 342, 417
BseRI GAGGAG 2 cut(s) 35, 461
BseXI GCAGC 1 cut(s) 147
BsgI GTGCAG 2 cut(s) 16, 154
Bsh1236I CGCG 1 cut(s) 228
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 1 cut(s) 231
BsiEI CGRYCG 1 cut(s) 342
BsiHKCI CYCGRG 2 cut(s) 152, 429
BsmAI GTCTC 2 cut(s) 443, 490
BsmBI CGTCTC 1 cut(s) 490
BsnI GGCC 1 cut(s) 231
BsoBI CYCGRG 2 cut(s) 152, 429
Bsp143I GATC 2 cut(s) 319, 379
BspACI CCGC 3 cut(s) 199, 228, 362
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 2 cut(s) 343, 416
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 1 cut(s) 374
BssMI GATC 2 cut(s) 319, 379
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 1 cut(s) 438
BstC8I GCNNGC 2 cut(s) 197, 262
BstDEI CTNAG 2 cut(s) 351, 403
BstFNI CGCG 1 cut(s) 228
BstKTI GATC 2 cut(s) 322, 382
BstMAI GTCTC 2 cut(s) 443, 490
BstMBI GATC 2 cut(s) 319, 379
BstMCI CGRYCG 1 cut(s) 342
BstMWI GCNNNNNNNGC 2 cut(s) 266, 294
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 147
BsuRI GGCC 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 197, 262
CaiI CAGNNNCTG 1 cut(s) 510
Csp6I GTAC 3 cut(s) 205, 310, 400
CviAII CATG 2 cut(s) 139, 314
CviJI RGCY 9 cut(s) 20, 39, 157, 172, 231, 260, 288, 297, 346
CviKI_1 RGCY 9 cut(s) 20, 39, 157, 172, 231, 260, 288, 297, 346
CviQI GTAC 3 cut(s) 205, 310, 400
DdeI CTNAG 2 cut(s) 351, 403
DpnI GATC 2 cut(s) 321, 381
DpnII GATC 2 cut(s) 319, 379
EaeI YGGCCR 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco88I CYCGRG 2 cut(s) 152, 429
Esp3I CGTCTC 1 cut(s) 490
FaeI CATG 2 cut(s) 142, 317
FaiI YATR 9 cut(s) 8, 77, 140, 149, 255, 315, 369, 458, 492
FatI CATG 2 cut(s) 138, 313
Fnu4HI GCNGC 2 cut(s) 136, 229
Fsp4HI GCNGC 2 cut(s) 136, 229
FspBI CTAG 1 cut(s) 384
GluI GCNGC 2 cut(s) 136, 229
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 231
Hin1II CATG 2 cut(s) 142, 317
Hpy188III TCNNGA 5 cut(s) 176, 323, 350, 374, 431
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 4 cut(s) 33, 53, 135, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 294
HpyF3I CTNAG 2 cut(s) 351, 403
Hsp92II CATG 2 cut(s) 142, 317
Kzo9I GATC 2 cut(s) 319, 379
LpnPI CCDG 5 cut(s) 189, 202, 279, 283, 363
Lsp1109I GCAGC 1 cut(s) 147
MaeI CTAG 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 222
MalI GATC 2 cut(s) 321, 381
MboI GATC 2 cut(s) 319, 379
MboII GAAGA 5 cut(s) 26, 121, 401, 446, 455
MluCI AATT 3 cut(s) 82, 249, 394
MnlI CCTC 5 cut(s) 56, 183, 251, 276, 439
MseI TTAA 2 cut(s) 60, 332
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 266, 294
NdeII GATC 2 cut(s) 319, 379
NlaIII CATG 2 cut(s) 142, 317
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 222
PaeR7I CTCGAG 1 cut(s) 429
PkrI GCNGC 2 cut(s) 137, 230
PshBI ATTAAT 1 cut(s) 332
PsiI TTATAA 1 cut(s) 492
PspN4I GGNNCC 1 cut(s) 360
PstNI CAGNNNCTG 1 cut(s) 510
RsaI GTAC 3 cut(s) 206, 311, 401
RsaNI GTAC 3 cut(s) 205, 310, 400
SaqAI TTAA 2 cut(s) 60, 332
SatI GCNGC 2 cut(s) 136, 229
Sau3AI GATC 2 cut(s) 319, 379
SetI ASST 6 cut(s) 82, 159, 243, 348, 483, 512
Sfr274I CTCGAG 1 cut(s) 429
SlaI CTCGAG 1 cut(s) 429
SmlI CTYRAG 2 cut(s) 270, 429
SmoI CTYRAG 2 cut(s) 270, 429
Sse9I AATT 3 cut(s) 82, 249, 394
SsiI CCGC 3 cut(s) 199, 228, 362
SspMI CTAG 1 cut(s) 384
TaaI ACNGT 1 cut(s) 340
TaqI TCGA 2 cut(s) 342, 430
TasI AATT 3 cut(s) 82, 249, 394
TatI WGTACW 1 cut(s) 204
TauI GCSGC 1 cut(s) 231
Tru1I TTAA 2 cut(s) 60, 332
Tru9I TTAA 2 cut(s) 60, 332
TseFI GTSAC 1 cut(s) 222
TseI GCWGC 1 cut(s) 135
Tsp45I GTSAC 1 cut(s) 222
VspI ATTAAT 1 cut(s) 332
XapI RAATTY 1 cut(s) 249
XhoI CTCGAG 1 cut(s) 429
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.