Rh4BG063700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000237
Physical Location & Seq
Forward (+)
11350608 .. 11351277
670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG063700.1

Sequence Viewer

Length: 255 bp
ATGGACAAGAGAGGAGCAGGCAAACCTCTCCATTGGCTAGTATTTGAACATGTCGCACGTGTAGTTCCCAGGATGGACAGCGATCAAACTGATTACGGGATGATTGCTATTCTTCTGGCCTTGGTGGTGGTCGGTTCGGTCCTTTTCCTGCCCCTGCTCATCGGTCCTCTGCAGCCCCCGTCCGTCGCCGTTATGCTGATAATCCCAGTGGTTCTGGTGGCTGCGTTGATCTTCCTCCACAAAGCCTCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.11

Weight (kDa)

9.4

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 59
AflIII ACRYGT 2 cut(s) 49, 58
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 68
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 2 cut(s) 172, 221
AspS9I GGNCC 2 cut(s) 139, 164
AvaII GGWCC 2 cut(s) 139, 164
BbrPI CACGTG 1 cut(s) 59
BbvI GCAGC 2 cut(s) 184, 208
BccI CCATC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 70
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 170
BisI GCNGC 2 cut(s) 173, 222
BlsI GCNGC 2 cut(s) 174, 223
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 2 cut(s) 139, 164
BmgT120I GGNCC 2 cut(s) 139, 164
BmrFI CCNGG 1 cut(s) 70
BmrI ACTGGG 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 200
BsaAI YACGTR 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 68, 120
Bse1I ACTGG 1 cut(s) 206
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 68, 120
BseGI GGATG 2 cut(s) 78, 105
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 2 cut(s) 184, 208
BshFI GGCC 1 cut(s) 119
BsnI GGCC 1 cut(s) 119
Bsp143I GATC 2 cut(s) 82, 228
BspANI GGCC 1 cut(s) 119
BspMAI CTGCAG 1 cut(s) 174
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 68, 120
BssMI GATC 2 cut(s) 82, 228
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 70
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 19
BstF5I GGATG 2 cut(s) 78, 105
BstKTI GATC 2 cut(s) 85, 231
BstMBI GATC 2 cut(s) 82, 228
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 184, 208
BsuRI GGCC 1 cut(s) 119
BtsCI GGATG 2 cut(s) 78, 105
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 139, 164
CviAII CATG 1 cut(s) 50
CviJI RGCY 5 cut(s) 37, 119, 175, 221, 245
CviKI_1 RGCY 5 cut(s) 37, 119, 175, 221, 245
DpnI GATC 2 cut(s) 84, 230
DpnII GATC 2 cut(s) 82, 228
Eco130I CCWWGG 1 cut(s) 120
Eco47I GGWCC 2 cut(s) 139, 164
Eco72I CACGTG 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 1 cut(s) 53
FaiI YATR 2 cut(s) 51, 194
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 173, 222
FokI GGATG 2 cut(s) 85, 112
Fsp4HI GCNGC 2 cut(s) 173, 222
FspBI CTAG 1 cut(s) 38
GluI GCNGC 2 cut(s) 173, 222
HaeIII GGCC 1 cut(s) 119
Hin1II CATG 1 cut(s) 53
Hpy99I CGWCG 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 172
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 1 cut(s) 53
Kzo9I GATC 2 cut(s) 82, 228
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 8 cut(s) 3, 55, 82, 101, 161, 167, 200, 219
Lsp1109I GCAGC 2 cut(s) 184, 208
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 58
MalI GATC 2 cut(s) 84, 230
MboI GATC 2 cut(s) 82, 228
MboII GAAGA 2 cut(s) 104, 223
MnlI CCTC 4 cut(s) 5, 36, 177, 245
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
NdeII GATC 2 cut(s) 82, 228
NlaIII CATG 1 cut(s) 53
NspI RCATGY 1 cut(s) 53
PciI ACATGT 1 cut(s) 49
PkrI GCNGC 2 cut(s) 174, 223
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
Ppu21I YACGTR 1 cut(s) 59
PscI ACATGT 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 68
PspCI CACGTG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 68
PspPI GGNCC 2 cut(s) 139, 164
PstI CTGCAG 1 cut(s) 174
SatI GCNGC 2 cut(s) 173, 222
Sau3AI GATC 2 cut(s) 82, 228
Sau96I GGNCC 2 cut(s) 139, 164
ScrFI CCNGG 1 cut(s) 70
SetI ASST 2 cut(s) 28, 61
SfcI CTRYAG 1 cut(s) 170
SinI GGWCC 2 cut(s) 139, 164
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 120
TaiI ACGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 248
TaqII GACCGA 2 cut(s) 127, 152
TscAI CASTG 1 cut(s) 213
TseI GCWGC 2 cut(s) 172, 221
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 2 cut(s) 139, 164
XceI RCATGY 1 cut(s) 53
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.