Rroxscaffold_5G00340840

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000237
Physical Location & Seq
Forward (+)
9338204 .. 9347252
9049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00340840.1

Sequence Viewer

Length: 663 bp
ATGGAAGAACTCCTTACGAAATCCTATCGCGGGTGCCGGCTCGAACTCGGTCGCTTCAAATGTGTTTTCAAGCATTGGCTCTCTCTTATATCTGACCCCAAATTCTGTCAATGCCACACCATTTGGAACCAAAACTCCTCCGTCTCCGCAGTCTTTGGTGACAGATCCACAAACTTTTTTTCCATCACTCTTCCTCGTGATCATGACCATAACCATAACCCCGCATCATCGCGCTGCAATCCTCTTAATTTTGTTCAAAACCAATATTATCGCATCGAGATTATCCACTCCTGCAATGGCCTCTTCTTGTGTCATCCCATCAATGCTACAAGTACAAGTAGAACCCCATATTTTGTTCTCAATCCCACAACCAACCAGTTCTTGACACTTACAATTCCCCCTGCTGCTGCTACTTCTAATGGTCAACAGATACAAACCCATATTATTGGTTGTGCTCGGCTTTTGACCCTTCCAAATCACCTCATTACAAGAAACGGTGAGTGCTTCATCCGAAAATCTAAGGTTGATATGCACGCACTCACTATCGAAGAGTGCACAGAAGAAGCTGTTAAACTGCAGCAGCGGTGGGAAGTGAAGAAGGCGGAGAAGAAAGAGCACAAGAAGAGAGAAGGAGAGTGGAAGCGAAAGGAATGGCGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

220

Amino Acids

25.58

Weight (kDa)

9.22

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 33
AccII CGCG 2 cut(s) 30, 232
AciI CCGC 5 cut(s) 30, 147, 222, 583, 602
AclWI GGATC 1 cut(s) 159
AcsI RAATTY 1 cut(s) 101
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 3 cut(s) 58, 70, 257
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 1 cut(s) 566
AluI AGCT 1 cut(s) 566
Alw21I GWGCWC 3 cut(s) 457, 557, 618
Alw26I GTCTC 1 cut(s) 148
Alw44I GTGCAC 1 cut(s) 553
AlwI GGATC 1 cut(s) 159
AoxI GGCC 1 cut(s) 298
ApaLI GTGCAC 1 cut(s) 553
ApeKI GCWGC 5 cut(s) 234, 404, 407, 577, 580
ApoI RAATTY 1 cut(s) 101
AspLEI GCGC 1 cut(s) 234
AsuHPI GGTGA 3 cut(s) 170, 470, 509
BaeGI GKGCMC 1 cut(s) 557
BanI GGYRCC 1 cut(s) 33
BauI CACGAG 1 cut(s) 195
Bbv12I GWGCWC 3 cut(s) 457, 557, 618
BbvI GCAGC 5 cut(s) 221, 391, 394, 589, 592
BccI CCATC 2 cut(s) 191, 326
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 148
BfmI CTRYAG 1 cut(s) 575
BisI GCNGC 5 cut(s) 235, 405, 408, 578, 581
BlsI GCNGC 5 cut(s) 236, 406, 409, 579, 582
BmiI GGNNCC 2 cut(s) 35, 128
BmsI GCATC 2 cut(s) 233, 282
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse118I RCCGGY 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 376
Bse3DI GCAATG 1 cut(s) 301
BseGI GGATG 2 cut(s) 313, 507
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 301
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 1 cut(s) 127
BseSI GKGCMC 1 cut(s) 557
BseXI GCAGC 5 cut(s) 221, 391, 394, 589, 592
Bsh1236I CGCG 2 cut(s) 30, 232
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 300
BshNI GGYRCC 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 52
BsiHKAI GWGCWC 3 cut(s) 457, 557, 618
BsiSI CCGG 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 148
BsmBI CGTCTC 1 cut(s) 148
BsnI GGCC 1 cut(s) 300
Bsp1286I GDGCHC 3 cut(s) 457, 557, 618
Bsp143I GATC 2 cut(s) 164, 199
BspACI CCGC 5 cut(s) 30, 147, 222, 583, 602
BspANI GGCC 1 cut(s) 300
BspFNI CGCG 2 cut(s) 30, 232
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 35, 128
BspMAI CTGCAG 1 cut(s) 579
BspPI GGATC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 36
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 1 cut(s) 36
BssMI GATC 2 cut(s) 164, 199
BssSI CACGAG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 497
Bst6I CTCTTC 4 cut(s) 195, 308, 543, 617
BstC8I GCNNGC 2 cut(s) 38, 534
BstDEI CTNAG 1 cut(s) 519
BstF5I GGATG 2 cut(s) 313, 507
BstFNI CGCG 2 cut(s) 30, 232
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 2 cut(s) 167, 202
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 2 cut(s) 164, 199
BstMCI CGRYCG 1 cut(s) 52
BstSFI CTRYAG 1 cut(s) 575
BstSLI GKGCMC 1 cut(s) 557
BstUI CGCG 2 cut(s) 30, 232
BstV1I GCAGC 5 cut(s) 221, 391, 394, 589, 592
BstX2I RGATCY 1 cut(s) 164
BstXI CCANNNNNNTGG 1 cut(s) 446
BstYI RGATCY 1 cut(s) 164
BsuRI GGCC 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 2 cut(s) 313, 507
Cac8I GCNNGC 2 cut(s) 38, 534
CciI TCATGA 1 cut(s) 202
CfoI GCGC 1 cut(s) 234
Cfr10I RCCGGY 1 cut(s) 36
Csp6I GTAC 1 cut(s) 333
CspCI CAANNNNNGTGG 2 cut(s) 104, 139
CviAII CATG 1 cut(s) 203
CviJI RGCY 5 cut(s) 40, 79, 300, 460, 566
CviKI_1 RGCY 5 cut(s) 40, 79, 300, 460, 566
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 1 cut(s) 519
DpnI GATC 2 cut(s) 166, 201
DpnII GATC 2 cut(s) 164, 199
Eam1104I CTCTTC 4 cut(s) 195, 308, 543, 617
EarI CTCTTC 4 cut(s) 195, 308, 543, 617
EciI GGCGGA 1 cut(s) 617
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 1 cut(s) 206
FaiI YATR 7 cut(s) 89, 204, 210, 216, 349, 441, 530
FalI AAGNNNNNCTT 1 cut(s) 29
FatI CATG 1 cut(s) 202
FauI CCCGC 2 cut(s) 23, 229
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 5 cut(s) 235, 405, 408, 578, 581
FokI GGATG 2 cut(s) 300, 494
Fsp4HI GCNGC 5 cut(s) 235, 405, 408, 578, 581
GlaI GCGC 1 cut(s) 233
GluI GCNGC 5 cut(s) 235, 405, 408, 578, 581
HaeIII GGCC 1 cut(s) 300
HapII CCGG 1 cut(s) 37
HhaI GCGC 1 cut(s) 234
Hin1II CATG 1 cut(s) 206
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 1 cut(s) 425
HindII GTYRAC 1 cut(s) 425
HpaII CCGG 1 cut(s) 37
HphI GGTGA 3 cut(s) 170, 470, 509
Hpy166II GTNNAC 2 cut(s) 425, 555
Hpy188I TCNGA 2 cut(s) 94, 512
Hpy188III TCNNGA 4 cut(s) 197, 203, 277, 382
Hpy8I GTNNAC 2 cut(s) 425, 555
HpyAV CCTTC 3 cut(s) 479, 592, 623
HpyCH4III ACNGT 1 cut(s) 497
HpyCH4V TGCA 5 cut(s) 237, 294, 532, 555, 577
HpyF3I CTNAG 1 cut(s) 519
Hsp92II CATG 1 cut(s) 206
HspAI GCGC 1 cut(s) 232
KroI GCCGGC 1 cut(s) 36
KroNI GCCGGC 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 2 cut(s) 164, 199
LpnPI CCDG 4 cut(s) 50, 304, 389, 414
Lsp1109I GCAGC 5 cut(s) 221, 391, 394, 589, 592
LweI GCATC 2 cut(s) 233, 282
MaeIII GTNAC 1 cut(s) 158
MalI GATC 2 cut(s) 166, 201
MboI GATC 2 cut(s) 164, 199
MboII GAAGA 8 cut(s) 17, 182, 295, 560, 572, 607, 619, 634
MflI RGATCY 1 cut(s) 164
MhlI GDGCHC 3 cut(s) 457, 557, 618
MluCI AATT 3 cut(s) 101, 247, 393
MnlI CCTC 5 cut(s) 148, 204, 252, 311, 491
MroNI GCCGGC 1 cut(s) 36
MseI TTAA 2 cut(s) 246, 570
MspA1I CMGCKG 1 cut(s) 583
MspI CCGG 1 cut(s) 37
MvnI CGCG 2 cut(s) 30, 232
NaeI GCCGGC 1 cut(s) 38
NdeII GATC 2 cut(s) 164, 199
NgoMIV GCCGGC 1 cut(s) 36
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 2 cut(s) 35, 128
NmeAIII GCCGAG 1 cut(s) 436
NmuCI GTSAC 1 cut(s) 158
PagI TCATGA 1 cut(s) 202
PdiI GCCGGC 1 cut(s) 38
PkrI GCNGC 5 cut(s) 236, 406, 409, 579, 582
PspN4I GGNNCC 2 cut(s) 35, 128
PstI CTGCAG 1 cut(s) 579
PsuI RGATCY 1 cut(s) 164
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SaqAI TTAA 2 cut(s) 246, 570
SatI GCNGC 5 cut(s) 235, 405, 408, 578, 581
Sau3AI GATC 2 cut(s) 164, 199
SduI GDGCHC 3 cut(s) 457, 557, 618
SetI ASST 3 cut(s) 483, 525, 568
SfaNI GCATC 2 cut(s) 233, 282
SfcI CTRYAG 1 cut(s) 575
Sse9I AATT 3 cut(s) 101, 247, 393
SsiI CCGC 5 cut(s) 30, 147, 222, 583, 602
SspI AATATT 1 cut(s) 266
TaaI ACNGT 1 cut(s) 497
TaqI TCGA 3 cut(s) 42, 276, 546
TaqII GACCGA 1 cut(s) 38
TasI AATT 3 cut(s) 101, 247, 393
TatI WGTACW 1 cut(s) 332
Tru1I TTAA 2 cut(s) 246, 570
Tru9I TTAA 2 cut(s) 246, 570
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 5 cut(s) 234, 404, 407, 577, 580
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 496
TspGWI ACGGA 1 cut(s) 130
VneI GTGCAC 1 cut(s) 553
XapI RAATTY 1 cut(s) 101
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.