MD16G1240000.v1.1

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000237
Physical Location & Seq
Forward (+)
25543517 .. 25544722
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1240000.v1.1.491

Sequence Viewer

Length: 1206 bp
ATGCAGGGTCGATGTCCTAATCTGCCCATAATTTCTTCTCCAGCAGAAATCTTAGCCAACAATGAAAACCTGCTCACACCAATCCTTTTATGCATCCCAACTCGAGCTCTACTTCGCCTCAAATGCGTATGCAAGCGTTGGCTTTCTCTTATCTCTGACCCCAAATTTTGTGACAACCATACCTTCAAAAATCCATACCCCAATTTCTCAGCCTTCTTTAACACAACAATGCAACAATTCTACCGCATATCAATTCAGAACAACGAAAACACATTTAAGTCTCCATCGAAACATCCTGAGTTCATCCGAGGTCTACCTAGAAGCCTTAAGATTTTACGGTCTTGCAATGGCTTGCTCTTGTGTTGTACCTCTCACGAAATTACAAACTTGAGAAATACCCCAACATATTATGTACTCAATCCCACAACCAATCATTTCGTAGCTCTCGCTAATTCACCATATGCTACTAATTCCACAAGCCTTTTGGGGGTTGCTTTGGCTTTTGACCCTTCCACATCGATTCATTACAAGGTTATCTGCGTCCAGTGCATTGCTGGATCTGTTGTATCATTCCAAATAGAGATATATTCGTCTGAGACTCAAAATTGGACGCTTCGAAAGTCTACTTTCGATAGGCCATTCCATATTGACTTCAGCCATGGGGTGTACTTCAATGGTGCAATTAATTGGATCAGCCGTACAAGTAGGTTGTTGCACTATCACTTAGATCATGAAGAGGGTCATGGATTGGTGTCTAGGCCTCCAGATTACAATGTTTTTCGCAAGCGGGAGTATATATATTTTGGGGAGTCACGTGGCCATTTGCACCTCATTGAAATTTATAGGCCTTGTTTTACTCAATTTGACGTGATGGAGATGGGGAGGGACTACTCTGGCTGGTTTGTCAAGTACCATGTTGATCTTGATACAATAACCGCCAAGTTTCCGGAAATGGTTCCGCAACATAATCTTGATGATCCTAGTGAAGAAAATTGGTACTATGAGTTTGTTGTTCTCTTTCTTGTTCGAGAAGAAAATGAAGAGGAGACAGCTATGTTCTTGTATATTCCTTGTAAAGTCATCTCTTATAATCTTTTAGATAGAACCTGTAAGACAGCTTGTGAGTTAACTCTCAAGGGCAAGAGATCGTTGCAAATTGGGTGGCGAGATACTTATCATTGTATGGAGACGTTGGCTTGCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

402

Amino Acids

46.57

Weight (kDa)

7.21

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 106 - 235 6.3e-11 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 111 - 316 1.2e-08 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1089
Acc36I ACCTGC 1 cut(s) 78
AccI GTMKAC 2 cut(s) 313, 623
AccIII TCCGGA 1 cut(s) 946
AciI CCGC 4 cut(s) 244, 787, 936, 959
AclWI GGATC 3 cut(s) 565, 698, 971
AcoI YGGCCR 1 cut(s) 817
AcsI RAATTY 2 cut(s) 164, 837
AcuI CTGAAG 1 cut(s) 637
AcvI CACGTG 1 cut(s) 815
AfaI GTAC 6 cut(s) 367, 414, 668, 700, 911, 998
AfiI CCNNNNNNNGG 1 cut(s) 487
AflII CTTAAG 1 cut(s) 326
AgsI TTSAA 3 cut(s) 187, 673, 836
AjiI CACGTC 1 cut(s) 868
AluBI AGCT 4 cut(s) 107, 443, 1052, 1118
AluI AGCT 4 cut(s) 107, 443, 1052, 1118
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 4 cut(s) 285, 590, 1040, 1181
AlwI GGATC 3 cut(s) 565, 698, 971
Ama87I CYCGRG 1 cut(s) 102
Aor13HI TCCGGA 1 cut(s) 946
AoxI GGCC 4 cut(s) 635, 758, 817, 845
ApoI RAATTY 2 cut(s) 164, 837
AseI ATTAAT 1 cut(s) 684
Asp700I GAANNNNTTC 1 cut(s) 954
AsuHPI GGTGA 1 cut(s) 447
AsuII TTCGAA 1 cut(s) 616
AvaI CYCGRG 1 cut(s) 102
BalI TGGCCA 1 cut(s) 819
BanII GRGCYC 1 cut(s) 109
BbrPI CACGTG 1 cut(s) 815
Bbv12I GWGCWC 1 cut(s) 109
BccI CCATC 3 cut(s) 292, 865, 871
BceAI ACGGC 1 cut(s) 681
BcoDI GTCTC 4 cut(s) 285, 590, 1040, 1181
BfaI CTAG 3 cut(s) 318, 756, 981
BfrI CTTAAG 1 cut(s) 326
BfuAI ACCTGC 1 cut(s) 78
BmeT110I CYCGRG 1 cut(s) 102
BmgBI CACGTC 1 cut(s) 868
BmiI GGNNCC 1 cut(s) 957
BmsI GCATC 1 cut(s) 102
BpmI CTGGAG 2 cut(s) 24, 747
Bpu14I TTCGAA 1 cut(s) 616
BpuEI CTTGAG 2 cut(s) 409, 1118
Bsa29I ATCGAT 1 cut(s) 518
BsaAI YACGTR 1 cut(s) 815
BsaBI GATNNNNATC 1 cut(s) 1173
BsaJI CCNNGG 2 cut(s) 307, 658
BsaWI WCCGGW 1 cut(s) 946
Bsc4I CCNNNNNNNGG 1 cut(s) 487
Bse1I ACTGG 1 cut(s) 544
Bse3DI GCAATG 2 cut(s) 352, 549
Bse8I GATNNNNATC 1 cut(s) 1173
BseAI TCCGGA 1 cut(s) 946
BseCI ATCGAT 1 cut(s) 518
BseDI CCNNGG 2 cut(s) 307, 658
BseGI GGATG 3 cut(s) 93, 292, 303
BseJI GATNNNNATC 1 cut(s) 1173
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMI GCAATG 2 cut(s) 352, 549
BseMII CTCAG 3 cut(s) 222, 288, 585
BseNI ACTGG 1 cut(s) 544
BseRI GAGGAG 1 cut(s) 1058
BshFI GGCC 4 cut(s) 637, 760, 819, 847
BshVI ATCGAT 1 cut(s) 518
BsiHKAI GWGCWC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 947
BslFI GGGAC 1 cut(s) 899
BslI CCNNNNNNNGG 1 cut(s) 487
BsmAI GTCTC 4 cut(s) 285, 590, 1040, 1181
BsmBI CGTCTC 1 cut(s) 1181
BsmFI GGGAC 1 cut(s) 899
BsnI GGCC 4 cut(s) 637, 760, 819, 847
BsoBI CYCGRG 1 cut(s) 102
Bsp119I TTCGAA 1 cut(s) 616
Bsp1286I GDGCHC 1 cut(s) 109
Bsp13I TCCGGA 1 cut(s) 946
Bsp143I GATC 6 cut(s) 557, 690, 727, 919, 976, 1145
Bsp19I CCATGG 1 cut(s) 658
BspACI CCGC 4 cut(s) 244, 787, 936, 959
BspANI GGCC 4 cut(s) 637, 760, 819, 847
BspCNI CTCAG 3 cut(s) 221, 289, 586
BspDI ATCGAT 1 cut(s) 518
BspEI TCCGGA 1 cut(s) 946
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 1 cut(s) 957
BspMI ACCTGC 1 cut(s) 78
BspPI GGATC 3 cut(s) 565, 698, 971
BspT104I TTCGAA 1 cut(s) 616
BspTI CTTAAG 1 cut(s) 326
BsrDI GCAATG 2 cut(s) 352, 549
BsrI ACTGG 1 cut(s) 544
BssECI CCNNGG 2 cut(s) 307, 658
BssMI GATC 6 cut(s) 557, 690, 727, 919, 976, 1145
BssT1I CCWWGG 1 cut(s) 658
Bst4CI ACNGT 1 cut(s) 339
Bst6I CTCTTC 2 cut(s) 729, 1035
BstAFI CTTAAG 1 cut(s) 326
BstBAI YACGTR 1 cut(s) 815
BstBI TTCGAA 1 cut(s) 616
BstC8I GCNNGC 4 cut(s) 134, 353, 785, 1198
BstDEI CTNAG 5 cut(s) 52, 208, 297, 594, 724
BstDSI CCRYGG 1 cut(s) 658
BstF5I GGATG 3 cut(s) 93, 292, 303
BstKTI GATC 6 cut(s) 560, 693, 730, 922, 979, 1148
BstMAI GTCTC 4 cut(s) 285, 590, 1040, 1181
BstMBI GATC 6 cut(s) 557, 690, 727, 919, 976, 1145
BstMWI GCNNNNNNNGC 2 cut(s) 123, 546
BstX2I RGATCY 1 cut(s) 557
BstYI RGATCY 1 cut(s) 557
Bsu15I ATCGAT 1 cut(s) 518
BsuRI GGCC 4 cut(s) 637, 760, 819, 847
BsuTUI ATCGAT 1 cut(s) 518
BtgI CCRYGG 1 cut(s) 658
BtrI CACGTC 1 cut(s) 868
BtsCI GGATG 3 cut(s) 93, 292, 303
BtsIMutI CAGTG 1 cut(s) 551
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 4 cut(s) 134, 353, 785, 1198
CciI TCATGA 1 cut(s) 730
ClaI ATCGAT 1 cut(s) 518
CseI GACGC 2 cut(s) 529, 619
Csp6I GTAC 6 cut(s) 366, 413, 667, 699, 910, 997
CspCI CAANNNNNGTGG 2 cut(s) 1142, 1177
CviAII CATG 4 cut(s) 659, 731, 743, 914
CviQI GTAC 6 cut(s) 366, 413, 667, 699, 910, 997
DdeI CTNAG 5 cut(s) 52, 208, 297, 594, 724
DpnI GATC 6 cut(s) 559, 692, 729, 921, 978, 1147
DpnII GATC 6 cut(s) 557, 690, 727, 919, 976, 1145
EaeI YGGCCR 1 cut(s) 817
Eam1104I CTCTTC 2 cut(s) 729, 1035
EarI CTCTTC 2 cut(s) 729, 1035
Ecl136II GAGCTC 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 658
Eco147I AGGCCT 2 cut(s) 760, 847
Eco24I GRGCYC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 637
Eco72I CACGTG 1 cut(s) 815
Eco88I CYCGRG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 658
EcoT22I ATGCAT 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 658
Esp3I CGTCTC 1 cut(s) 1181
FaeI CATG 4 cut(s) 662, 734, 746, 917
FaqI GGGAC 1 cut(s) 899
FatI CATG 4 cut(s) 658, 730, 742, 913
FauI CCCGC 1 cut(s) 780
FauNDI CATATG 1 cut(s) 460
FblI GTMKAC 2 cut(s) 313, 623
FokI GGATG 3 cut(s) 80, 279, 290
FriOI GRGCYC 1 cut(s) 109
FspBI CTAG 3 cut(s) 318, 756, 981
GsuI CTGGAG 2 cut(s) 24, 747
HaeIII GGCC 4 cut(s) 637, 760, 819, 847
HapII CCGG 1 cut(s) 947
HgaI GACGC 2 cut(s) 529, 619
Hin1II CATG 4 cut(s) 662, 734, 746, 917
HincII GTYRAC 1 cut(s) 1128
HindII GTYRAC 1 cut(s) 1128
HinfI GANTC 3 cut(s) 520, 598, 809
HpaI GTTAAC 1 cut(s) 1128
HpaII CCGG 1 cut(s) 947
HphI GGTGA 1 cut(s) 447
Hpy166II GTNNAC 4 cut(s) 314, 624, 667, 1128
Hpy188I TCNGA 4 cut(s) 157, 258, 308, 595
Hpy188III TCNNGA 8 cut(s) 296, 374, 731, 764, 923, 947, 971, 1028
Hpy8I GTNNAC 4 cut(s) 314, 624, 667, 1128
HpyAV CCTTC 3 cut(s) 193, 223, 519
HpyCH4III ACNGT 1 cut(s) 339
HpyCH4IV ACGT 3 cut(s) 814, 867, 1190
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 546
HpyF3I CTNAG 5 cut(s) 52, 208, 297, 594, 724
HpySE526I ACGT 3 cut(s) 814, 867, 1190
Hsp92II CATG 4 cut(s) 662, 734, 746, 917
Kpn2I TCCGGA 1 cut(s) 946
KspAI GTTAAC 1 cut(s) 1128
Kzo9I GATC 6 cut(s) 557, 690, 727, 919, 976, 1145
LweI GCATC 1 cut(s) 102
MaeI CTAG 3 cut(s) 318, 756, 981
MaeII ACGT 3 cut(s) 814, 867, 1190
MaeIII GTNAC 2 cut(s) 170, 810
MalI GATC 6 cut(s) 559, 692, 729, 921, 978, 1147
MboI GATC 6 cut(s) 557, 690, 727, 919, 976, 1145
MboII GAAGA 5 cut(s) 27, 746, 998, 1043, 1052
MflI RGATCY 1 cut(s) 557
MhlI GDGCHC 1 cut(s) 109
MlsI TGGCCA 1 cut(s) 819
MluNI TGGCCA 1 cut(s) 819
MlyI GAGTC 2 cut(s) 592, 818
MnlI CCTC 8 cut(s) 128, 302, 379, 730, 771, 839, 876, 1036
Mox20I TGGCCA 1 cut(s) 819
Mph1103I ATGCAT 1 cut(s) 95
MroI TCCGGA 1 cut(s) 946
MroXI GAANNNNTTC 1 cut(s) 954
MscI TGGCCA 1 cut(s) 819
MseI TTAA 5 cut(s) 219, 276, 327, 684, 1127
MslI CAYNNNNRTG 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 819
MspCI CTTAAG 1 cut(s) 326
MspI CCGG 1 cut(s) 947
MwoI GCNNNNNNNGC 2 cut(s) 123, 546
NcoI CCATGG 1 cut(s) 658
NdeI CATATG 1 cut(s) 460
NdeII GATC 6 cut(s) 557, 690, 727, 919, 976, 1145
NlaIII CATG 4 cut(s) 662, 734, 746, 917
NlaIV GGNNCC 1 cut(s) 957
NmuCI GTSAC 2 cut(s) 170, 810
NsiI ATGCAT 1 cut(s) 95
NspV TTCGAA 1 cut(s) 616
PaeR7I CTCGAG 1 cut(s) 102
PagI TCATGA 1 cut(s) 730
PceI AGGCCT 2 cut(s) 760, 847
PdmI GAANNNNTTC 1 cut(s) 954
PfeI GAWTC 1 cut(s) 520
PleI GAGTC 2 cut(s) 592, 817
PmaCI CACGTG 1 cut(s) 815
PmlI CACGTG 1 cut(s) 815
PpsI GAGTC 2 cut(s) 592, 817
Ppu21I YACGTR 1 cut(s) 815
PshBI ATTAAT 1 cut(s) 684
PsiI TTATAA 1 cut(s) 1089
Psp124BI GAGCTC 1 cut(s) 109
PspCI CACGTG 1 cut(s) 815
PspN4I GGNNCC 1 cut(s) 957
PspXI VCTCGAGB 1 cut(s) 102
PsuI RGATCY 1 cut(s) 557
RsaI GTAC 6 cut(s) 367, 414, 668, 700, 911, 998
RsaNI GTAC 6 cut(s) 366, 413, 667, 699, 910, 997
RseI CAYNNNNRTG 1 cut(s) 227
SacI GAGCTC 1 cut(s) 109
SaqAI TTAA 5 cut(s) 219, 276, 327, 684, 1127
Sau3AI GATC 6 cut(s) 557, 690, 727, 919, 976, 1145
SchI GAGTC 2 cut(s) 592, 818
SduI GDGCHC 1 cut(s) 109
SfaNI GCATC 1 cut(s) 102
Sfr274I CTCGAG 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 616
SlaI CTCGAG 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 4 cut(s) 102, 326, 388, 1133
SmoI CTYRAG 4 cut(s) 102, 326, 388, 1133
SseBI AGGCCT 2 cut(s) 760, 847
SsiI CCGC 4 cut(s) 244, 787, 936, 959
SspMI CTAG 3 cut(s) 318, 756, 981
SstI GAGCTC 1 cut(s) 109
StuI AGGCCT 2 cut(s) 760, 847
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 1 cut(s) 339
TaiI ACGT 3 cut(s) 817, 870, 1193
TaqI TCGA 7 cut(s) 10, 103, 287, 518, 616, 630, 1027
TatI WGTACW 2 cut(s) 412, 666
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 5 cut(s) 219, 276, 327, 684, 1127
Tru9I TTAA 5 cut(s) 219, 276, 327, 684, 1127
TscAI CASTG 1 cut(s) 551
TseFI GTSAC 2 cut(s) 170, 810
Tsp45I GTSAC 2 cut(s) 170, 810
TspDTI ATGAA 5 cut(s) 78, 292, 512, 747, 1053
TspRI CASTG 1 cut(s) 551
Vha464I CTTAAG 1 cut(s) 326
VspI ATTAAT 1 cut(s) 684
XapI RAATTY 2 cut(s) 164, 837
XcmI CCANNNNNNNNNTGG 2 cut(s) 481, 551
XhoI CTCGAG 1 cut(s) 102
XmiI GTMKAC 2 cut(s) 313, 623
XmnI GAANNNNTTC 1 cut(s) 954
XspI CTAG 3 cut(s) 318, 756, 981
Zsp2I ATGCAT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.