RLG00000022287

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000237
Physical Location & Seq
Forward (+)
82247541 .. 82252752
5212 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022287

Sequence Viewer

Length: 885 bp
ATGGAGCAGAGACTTGACCTAAAACGCTGCAGCTACAGCAGCAGCTTACCCCAAACCATAGCCAACACGGAAGATATCCTTACAGAAATCCTTGTGCGTTTGCCTGCTCGACCTCTGGTTCGATTCAAATGCGTCTCCAAGCATTGGCTCTCTCTTATCTCTGACCCTAACTTCTGTCATCGCCACACCCTTAGGAACCCCCACTCCTCCATCTCCGCCGTCTTTACTAAATCATCCACTGGCTTTTACTTCGTCCCTCTTTATCTTGATCATGATTTCTCCACACTTATTCCTCCAGCTGCTGCTGCCGCTACTACACATCAACGCCGTGTCTTCGGTTACACTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGTGGTATTCCTTTGGAGCGTTAATGAACCAGAAGATGACTATTGCCCTTATTTTCACATAGAGATATATTCTTCTGAGACTCAAAGTTGGAGACTTCTAGATTCCTCTTTCATTAGGGCAGGTAATGTCAGCTATGATGAAGGGGTGTACTGCAATGGCGCAGTTCATTGGGTAGGCATGGATAGTGAGATGTCATACTATCACCTAGATGAAGAGCGTGTTGGATTTGTTAATGGTTCTCCTACGCCTTCGGAGAAGAATTTATTTTGGAGGTATTTTTGGGAGTCTCATGGTGGTGGCCATTTGCATCTTATTGATATTAATGTCTTACTGCATTTGAAGTGTTGGAGATGGGGAGAGACTAGTCTGGTTGGTTTGTCAAGTACCGTGTTGATCTGGATCCCATATTCTCTACTTACCCGCAGCTCCCATGGTATTTTATTGTTGTTCTCTTTCTTGCTCGAGAGGAAACTGAAGGAGGGTAAAGTTCATCTTTGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

295

Amino Acids

33.87

Weight (kDa)

6.75

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 60 1.3e-07 F-box domain
FBA_1 PF07734 108 - 190 1.8e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 491
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 3 cut(s) 216, 309, 802
AclWI GGATC 2 cut(s) 775, 788
AcoI YGGCCR 1 cut(s) 679
AcsI RAATTY 1 cut(s) 640
AcuI CTGAAG 1 cut(s) 875
AfaI GTAC 2 cut(s) 530, 766
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 2 cut(s) 127, 721
AhlI ACTAGT 1 cut(s) 743
AjuI GAANNNNNNNTTGG 2 cut(s) 585, 617
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 5 cut(s) 33, 45, 299, 513, 807
AluI AGCT 5 cut(s) 33, 45, 299, 513, 807
Alw26I GTCTC 6 cut(s) 4, 139, 452, 466, 672, 734
AlwI GGATC 2 cut(s) 775, 788
AlwNI CAGNNNCTG 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 842
AoxI GGCC 1 cut(s) 679
ApeKI GCWGC 8 cut(s) 27, 30, 39, 42, 299, 302, 305, 804
ApoI RAATTY 1 cut(s) 640
ArsI GACNNNNNNTTYG 2 cut(s) 102, 134
AseI ATTAAT 1 cut(s) 702
AspLEI GCGC 1 cut(s) 542
AsuHPI GGTGA 2 cut(s) 360, 575
AvaI CYCGRG 1 cut(s) 842
AxyI CCTNAGG 1 cut(s) 191
BalI TGGCCA 1 cut(s) 681
BamHI GGATCC 1 cut(s) 780
BbsI GAAGAC 1 cut(s) 325
BbvI GCAGC 8 cut(s) 14, 42, 51, 54, 286, 289, 292, 816
BccI CCATC 2 cut(s) 218, 726
BceAI ACGGC 2 cut(s) 203, 312
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 6 cut(s) 4, 139, 452, 466, 672, 734
BcuI ACTAGT 1 cut(s) 743
BfaI CTAG 3 cut(s) 479, 587, 744
BfmI CTRYAG 2 cut(s) 28, 34
BfuAI ACCTGC 1 cut(s) 491
BisI GCNGC 9 cut(s) 28, 31, 40, 43, 300, 303, 306, 309, 805
BlsI GCNGC 9 cut(s) 29, 32, 41, 44, 301, 304, 307, 310, 806
BmeT110I CYCGRG 1 cut(s) 842
BmiI GGNNCC 2 cut(s) 197, 782
BmsI GCATC 1 cut(s) 697
BpiI GAAGAC 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 779
BsaJI CCNNGG 1 cut(s) 811
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 244
Bse21I CCTNAGG 1 cut(s) 191
Bse3DI GCAATG 1 cut(s) 541
Bse8I GATNNNNATC 1 cut(s) 779
BseDI CCNNGG 1 cut(s) 811
BseGI GGATG 1 cut(s) 233
BseJI GATNNNNATC 1 cut(s) 779
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 541
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 8 cut(s) 14, 42, 51, 54, 286, 289, 292, 816
BshFI GGCC 1 cut(s) 681
BsiHKCI CYCGRG 1 cut(s) 842
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 6 cut(s) 4, 139, 452, 466, 672, 734
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 1 cut(s) 681
BsoBI CYCGRG 1 cut(s) 842
Bsp143I GATC 3 cut(s) 268, 774, 780
Bsp19I CCATGG 1 cut(s) 811
BspACI CCGC 3 cut(s) 216, 309, 802
BspANI GGCC 1 cut(s) 681
BspCNI CTCAG 1 cut(s) 448
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 197, 782
BspMAI CTGCAG 1 cut(s) 32
BspMI ACCTGC 1 cut(s) 491
BspPI GGATC 2 cut(s) 775, 788
BspQI GCTCTTC 1 cut(s) 588
BsrDI GCAATG 1 cut(s) 541
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 811
BssMI GATC 3 cut(s) 268, 774, 780
BssT1I CCWWGG 1 cut(s) 811
Bst4CI ACNGT 1 cut(s) 769
Bst6I CTCTTC 1 cut(s) 588
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 191, 456
BstDSI CCRYGG 1 cut(s) 811
BstF5I GGATG 1 cut(s) 233
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 3 cut(s) 271, 777, 783
BstMAI GTCTC 6 cut(s) 4, 139, 452, 466, 672, 734
BstMBI GATC 3 cut(s) 268, 774, 780
BstMWI GCNNNNNNNGC 4 cut(s) 36, 39, 305, 308
BstSFI CTRYAG 2 cut(s) 28, 34
BstV1I GCAGC 8 cut(s) 14, 42, 51, 54, 286, 289, 292, 816
BstV2I GAAGAC 1 cut(s) 325
BstX2I RGATCY 1 cut(s) 780
BstYI RGATCY 1 cut(s) 780
Bsu36I CCTNAGG 1 cut(s) 191
BsuRI GGCC 1 cut(s) 681
BtgI CCRYGG 1 cut(s) 811
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 491
Cac8I GCNNGC 1 cut(s) 105
CaiI CAGNNNCTG 1 cut(s) 302
CciI TCATGA 1 cut(s) 271
CfoI GCGC 1 cut(s) 542
CseI GACGC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 529, 765
CviAII CATG 4 cut(s) 272, 559, 671, 812
CviQI GTAC 2 cut(s) 529, 765
DdeI CTNAG 2 cut(s) 191, 456
DpnI GATC 3 cut(s) 270, 776, 782
DpnII GATC 3 cut(s) 268, 774, 780
EaeI YGGCCR 1 cut(s) 679
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
EciI GGCGGA 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 811
Eco32I GATATC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 875
Eco81I CCTNAGG 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 842
EcoRV GATATC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 811
ErhI CCWWGG 1 cut(s) 811
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 4 cut(s) 275, 562, 674, 815
FalI AAGNNNNNCTT 3 cut(s) 63, 95, 858
FaqI GGGAC 1 cut(s) 239
FatI CATG 4 cut(s) 271, 558, 670, 811
FauI CCCGC 1 cut(s) 809
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 9 cut(s) 28, 31, 40, 43, 300, 303, 306, 309, 805
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 9 cut(s) 28, 31, 40, 43, 300, 303, 306, 309, 805
FspBI CTAG 3 cut(s) 479, 587, 744
GlaI GCGC 1 cut(s) 541
GluI GCNGC 9 cut(s) 28, 31, 40, 43, 300, 303, 306, 309, 805
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 681
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 542
Hin1II CATG 4 cut(s) 275, 562, 674, 815
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HinfI GANTC 4 cut(s) 123, 460, 482, 665
HphI GGTGA 2 cut(s) 360, 575
Hpy166II GTNNAC 1 cut(s) 529
Hpy188I TCNGA 3 cut(s) 163, 457, 634
Hpy188III TCNNGA 5 cut(s) 266, 272, 479, 778, 844
Hpy8I GTNNAC 1 cut(s) 529
HpyAV CCTTC 4 cut(s) 369, 515, 639, 850
HpyCH4III ACNGT 1 cut(s) 769
HpyCH4V TGCA 4 cut(s) 30, 534, 688, 715
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 39, 305, 308
HpyF3I CTNAG 2 cut(s) 191, 456
Hsp92II CATG 4 cut(s) 275, 562, 674, 815
HspAI GCGC 1 cut(s) 540
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 3 cut(s) 268, 774, 780
LguI GCTCTTC 1 cut(s) 588
LmnI GCTCC 3 cut(s) 4, 396, 812
LpnPI CCDG 8 cut(s) 101, 117, 225, 309, 423, 486, 734, 763
Lsp1109I GCAGC 8 cut(s) 14, 42, 51, 54, 286, 289, 292, 816
LweI GCATC 1 cut(s) 697
MaeI CTAG 3 cut(s) 479, 587, 744
MaeIII GTNAC 1 cut(s) 338
MalI GATC 3 cut(s) 270, 776, 782
MboI GATC 3 cut(s) 268, 774, 780
MboII GAAGA 6 cut(s) 83, 325, 425, 444, 605, 649
MflI RGATCY 1 cut(s) 780
MlsI TGGCCA 1 cut(s) 681
MluCI AATT 1 cut(s) 640
MluNI TGGCCA 1 cut(s) 681
MlyI GAGTC 2 cut(s) 454, 674
MmeI TCCRAC 3 cut(s) 449, 583, 707
MnlI CCTC 9 cut(s) 123, 217, 267, 303, 381, 496, 645, 840, 853
Mox20I TGGCCA 1 cut(s) 681
MscI TGGCCA 1 cut(s) 681
MseI TTAA 3 cut(s) 402, 612, 702
MslI CAYNNNNRTG 2 cut(s) 588, 675
Msp20I TGGCCA 1 cut(s) 681
MspA1I CMGCKG 1 cut(s) 299
MwoI GCNNNNNNNGC 4 cut(s) 36, 39, 305, 308
NcoI CCATGG 1 cut(s) 811
NdeII GATC 3 cut(s) 268, 774, 780
NlaIII CATG 4 cut(s) 275, 562, 674, 815
NlaIV GGNNCC 2 cut(s) 197, 782
PaeR7I CTCGAG 1 cut(s) 842
PagI TCATGA 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 123, 482
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 9 cut(s) 29, 32, 41, 44, 301, 304, 307, 310, 806
PleI GAGTC 2 cut(s) 454, 673
PpsI GAGTC 2 cut(s) 454, 673
PshBI ATTAAT 1 cut(s) 702
PspN4I GGNNCC 2 cut(s) 197, 782
PstI CTGCAG 1 cut(s) 32
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 780
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 2 cut(s) 530, 766
RsaNI GTAC 2 cut(s) 529, 765
RseI CAYNNNNRTG 2 cut(s) 588, 675
SapI GCTCTTC 1 cut(s) 588
SaqAI TTAA 3 cut(s) 402, 612, 702
SatI GCNGC 9 cut(s) 28, 31, 40, 43, 300, 303, 306, 309, 805
Sau3AI GATC 3 cut(s) 268, 774, 780
SchI GAGTC 2 cut(s) 454, 674
SfaNI GCATC 1 cut(s) 697
SfcI CTRYAG 2 cut(s) 28, 34
Sfr274I CTCGAG 1 cut(s) 842
SlaI CTCGAG 1 cut(s) 842
SmiMI CAYNNNNRTG 2 cut(s) 588, 675
SmlI CTYRAG 1 cut(s) 842
SmoI CTYRAG 1 cut(s) 842
SpeI ACTAGT 1 cut(s) 743
Sse9I AATT 1 cut(s) 640
SsiI CCGC 3 cut(s) 216, 309, 802
SspMI CTAG 3 cut(s) 479, 587, 744
StyI CCWWGG 1 cut(s) 811
TaaI ACNGT 1 cut(s) 769
TaqI TCGA 3 cut(s) 109, 121, 843
TasI AATT 1 cut(s) 640
TatI WGTACW 1 cut(s) 528
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 2 cut(s) 123, 482
Tru1I TTAA 3 cut(s) 402, 612, 702
Tru9I TTAA 3 cut(s) 402, 612, 702
TscAI CASTG 1 cut(s) 244
TseI GCWGC 8 cut(s) 27, 30, 39, 42, 299, 302, 305, 804
TspDTI ATGAA 6 cut(s) 420, 481, 534, 536, 606, 860
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 1 cut(s) 244
Van91I CCANNNNNTGG 1 cut(s) 144
VspI ATTAAT 1 cut(s) 702
XapI RAATTY 1 cut(s) 640
XbaI TCTAGA 1 cut(s) 478
XhoI CTCGAG 1 cut(s) 842
XspI CTAG 3 cut(s) 479, 587, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.