Rroxscaffold_2G00077800

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000237
Physical Location & Seq
Reverse (-)
1277467 .. 1279513
2047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00077800.1

Sequence Viewer

Length: 807 bp
ATGATTAACCGTCCATATTATGTTCTCAATCCCACAACCAACCAGTTCCGCACACTTATACCTCCAGCTGCTGCTGCCGCTACTACACATCAATGCCGTGTCTTCGGTTACGCTTTGGCTTTTGACCCTTCCAGATCACCTCATTACAAAGTGGTCTTCCTTTGGAGCATTAGTGAACCAGAAGATGACTATTGCCCTTATTTTCACATAGAGATATATTCCTCTGAGACTCAAAGTTGGAGACTTCTCGGTTCCTCTTTCATTAGGGCAGCTAATGTCAGCTATGATGAAGGGGTATACTGCAATGGTGCAGTTCATTGGGTGGGCATGGATCGTGAGATTTCGTACTATCACCTAGATGAAGAGCATGTTGGATTTGTCAATGGTTCTCCTATGCCTTCAAAGAAGAATTTATTTTGGAGGTATTTTTGGGAGTCTCATGGTGGTGGCCATTTGCATCTTATTGATATTTATCGGCCTGGTCTTACTGCATTTGAAGTGTTGGAGATGGGGAGAGACTACTCTGGTTGGTTTGTCAAGTACCATGTTGATTTGGATCCCATATTCACTGCTTACCCGCAGCTTCCATGGTATTTTATTGTTGTTCTCTTTATTGCTCGAGAGGAAACTGAAGGAGAGGATAGTTCATCTTTGTTGCTGCATATTCCTGGTAAAGTCATCTCTTATAGTCTTAGGAGCTATACTTTCAAATCTTTTGAGTTACCTCCAGAGGCTGGCGGTAATGATCCTTGTAACAGAGTTGGCCATCAAAATTATCGATATATGGAGAGTTTGGCTTGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

268

Amino Acids

30.96

Weight (kDa)

5.6

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 7 - 113 8e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 734
AccI GTMKAC 1 cut(s) 297
AciI CCGC 4 cut(s) 49, 78, 578, 738
AclWI GGATC 4 cut(s) 339, 551, 564, 740
AcoI YGGCCR 2 cut(s) 448, 763
AcsI RAATTY 1 cut(s) 409
AcuI CTGAAG 1 cut(s) 651
AfaI GTAC 2 cut(s) 347, 542
AfiI CCNNNNNNNGG 1 cut(s) 734
AgsI TTSAA 3 cut(s) 402, 497, 709
AjnI CCWGG 2 cut(s) 478, 667
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
AluBI AGCT 5 cut(s) 68, 272, 282, 583, 699
AluI AGCT 5 cut(s) 68, 272, 282, 583, 699
Alw26I GTCTC 4 cut(s) 221, 235, 441, 510
AlwI GGATC 4 cut(s) 339, 551, 564, 740
AlwNI CAGNNNCTG 2 cut(s) 71, 734
Ama87I CYCGRG 1 cut(s) 618
AoxI GGCC 3 cut(s) 448, 476, 763
ApeKI GCWGC 6 cut(s) 68, 71, 74, 269, 580, 658
ApoI RAATTY 1 cut(s) 409
AsuHPI GGTGA 2 cut(s) 129, 344
AvaI CYCGRG 1 cut(s) 618
BalI TGGCCA 2 cut(s) 450, 765
BamHI GGATCC 1 cut(s) 556
BbsI GAAGAC 2 cut(s) 94, 148
BbvI GCAGC 6 cut(s) 55, 58, 61, 281, 592, 645
BccI CCATC 2 cut(s) 502, 774
BceAI ACGGC 1 cut(s) 81
BciT130I CCWGG 2 cut(s) 480, 669
BcoDI GTCTC 4 cut(s) 221, 235, 441, 510
BfaI CTAG 1 cut(s) 356
BisI GCNGC 7 cut(s) 69, 72, 75, 78, 270, 581, 659
BlsI GCNGC 7 cut(s) 70, 73, 76, 79, 271, 582, 660
Bme1390I CCNGG 2 cut(s) 480, 669
BmeT110I CYCGRG 1 cut(s) 618
BmiI GGNNCC 2 cut(s) 253, 558
BmrFI CCNGG 2 cut(s) 480, 669
BmsI GCATC 1 cut(s) 466
BpiI GAAGAC 2 cut(s) 94, 148
BpmI CTGGAG 2 cut(s) 48, 711
Bsa29I ATCGAT 1 cut(s) 778
BsaBI GATNNNNATC 2 cut(s) 471, 555
BsaJI CCNNGG 1 cut(s) 587
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bsc4I CCNNNNNNNGG 1 cut(s) 734
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 310
Bse8I GATNNNNATC 2 cut(s) 471, 555
BseBI CCWGG 2 cut(s) 480, 669
BseCI ATCGAT 1 cut(s) 778
BseDI CCNNGG 1 cut(s) 587
BseJI GATNNNNATC 2 cut(s) 471, 555
BseLI CCNNNNNNNGG 1 cut(s) 734
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 6 cut(s) 55, 58, 61, 281, 592, 645
BsgI GTGCAG 1 cut(s) 330
BshFI GGCC 3 cut(s) 450, 478, 765
BshVI ATCGAT 1 cut(s) 778
BsiHKCI CYCGRG 1 cut(s) 618
BslI CCNNNNNNNGG 1 cut(s) 734
BsmAI GTCTC 4 cut(s) 221, 235, 441, 510
BsnI GGCC 3 cut(s) 450, 478, 765
BsoBI CYCGRG 1 cut(s) 618
Bsp143I GATC 4 cut(s) 134, 331, 556, 745
Bsp19I CCATGG 1 cut(s) 587
BspACI CCGC 4 cut(s) 49, 78, 578, 738
BspANI GGCC 3 cut(s) 450, 478, 765
BspCNI CTCAG 1 cut(s) 217
BspDI ATCGAT 1 cut(s) 778
BspLI GGNNCC 2 cut(s) 253, 558
BspPI GGATC 4 cut(s) 339, 551, 564, 740
BspQI GCTCTTC 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 587
BssMI GATC 4 cut(s) 134, 331, 556, 745
BssNAI GTATAC 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 587
Bst1107I GTATAC 1 cut(s) 298
Bst2UI CCWGG 2 cut(s) 480, 669
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 736
BstDEI CTNAG 2 cut(s) 225, 692
BstDSI CCRYGG 1 cut(s) 587
BstKTI GATC 4 cut(s) 137, 334, 559, 748
BstMAI GTCTC 4 cut(s) 221, 235, 441, 510
BstMBI GATC 4 cut(s) 134, 331, 556, 745
BstMWI GCNNNNNNNGC 2 cut(s) 74, 77
BstNI CCWGG 2 cut(s) 480, 669
BstNSI RCATGY 1 cut(s) 371
BstSCI CCNGG 2 cut(s) 478, 667
BstV1I GCAGC 6 cut(s) 55, 58, 61, 281, 592, 645
BstV2I GAAGAC 2 cut(s) 94, 148
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
BstZ17I GTATAC 1 cut(s) 298
Bsu15I ATCGAT 1 cut(s) 778
BsuRI GGCC 3 cut(s) 450, 478, 765
BsuTUI ATCGAT 1 cut(s) 778
BtgI CCRYGG 1 cut(s) 587
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 1 cut(s) 567
Cac8I GCNNGC 1 cut(s) 736
CaiI CAGNNNCTG 2 cut(s) 71, 734
ClaI ATCGAT 1 cut(s) 778
Csp6I GTAC 2 cut(s) 346, 541
CviAII CATG 5 cut(s) 328, 368, 440, 545, 588
CviQI GTAC 2 cut(s) 346, 541
DdeI CTNAG 2 cut(s) 225, 692
DpnI GATC 4 cut(s) 136, 333, 558, 747
DpnII GATC 4 cut(s) 134, 331, 556, 745
EaeI YGGCCR 2 cut(s) 448, 763
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 618
EcoRII CCWGG 2 cut(s) 478, 667
EcoT14I CCWWGG 1 cut(s) 587
ErhI CCWWGG 1 cut(s) 587
FaeI CATG 5 cut(s) 331, 371, 443, 548, 591
FatI CATG 5 cut(s) 327, 367, 439, 544, 587
FauI CCCGC 1 cut(s) 585
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 7 cut(s) 69, 72, 75, 78, 270, 581, 659
Fsp4HI GCNGC 7 cut(s) 69, 72, 75, 78, 270, 581, 659
FspBI CTAG 1 cut(s) 356
GluI GCNGC 7 cut(s) 69, 72, 75, 78, 270, 581, 659
GsuI CTGGAG 2 cut(s) 48, 711
HaeIII GGCC 3 cut(s) 450, 478, 765
Hin1II CATG 5 cut(s) 331, 371, 443, 548, 591
HinfI GANTC 2 cut(s) 229, 434
HphI GGTGA 2 cut(s) 129, 344
Hpy166II GTNNAC 2 cut(s) 176, 298
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 4 cut(s) 132, 335, 620, 728
Hpy8I GTNNAC 2 cut(s) 176, 298
HpyAV CCTTC 4 cut(s) 138, 284, 408, 626
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 5 cut(s) 303, 311, 457, 491, 661
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 77
HpyF3I CTNAG 2 cut(s) 225, 692
Hsp92II CATG 5 cut(s) 331, 371, 443, 548, 591
Kzo9I GATC 4 cut(s) 134, 331, 556, 745
LguI GCTCTTC 1 cut(s) 357
LmnI GCTCC 2 cut(s) 165, 696
Lsp1109I GCAGC 6 cut(s) 55, 58, 61, 281, 592, 645
LweI GCATC 1 cut(s) 466
MaeI CTAG 1 cut(s) 356
MaeIII GTNAC 3 cut(s) 107, 720, 752
MalI GATC 4 cut(s) 136, 333, 558, 747
MboI GATC 4 cut(s) 134, 331, 556, 745
MboII GAAGA 5 cut(s) 94, 148, 194, 374, 418
MflI RGATCY 1 cut(s) 556
MlsI TGGCCA 2 cut(s) 450, 765
MluCI AATT 2 cut(s) 409, 772
MluNI TGGCCA 2 cut(s) 450, 765
MlyI GAGTC 2 cut(s) 223, 443
MmeI TCCRAC 3 cut(s) 218, 352, 483
MnlI CCTC 9 cut(s) 72, 150, 232, 265, 414, 616, 631, 724, 735
Mox20I TGGCCA 2 cut(s) 450, 765
MscI TGGCCA 2 cut(s) 450, 765
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 3 cut(s) 91, 357, 444
Msp20I TGGCCA 2 cut(s) 450, 765
MspA1I CMGCKG 1 cut(s) 68
MspR9I CCNGG 2 cut(s) 480, 669
MvaI CCWGG 2 cut(s) 480, 669
MwoI GCNNNNNNNGC 2 cut(s) 74, 77
NcoI CCATGG 1 cut(s) 587
NdeII GATC 4 cut(s) 134, 331, 556, 745
NlaIII CATG 5 cut(s) 331, 371, 443, 548, 591
NlaIV GGNNCC 2 cut(s) 253, 558
NspI RCATGY 1 cut(s) 371
PaeR7I CTCGAG 1 cut(s) 618
PciSI GCTCTTC 1 cut(s) 357
PflMI CCANNNNNTGG 1 cut(s) 734
PkrI GCNGC 7 cut(s) 70, 73, 76, 79, 271, 582, 660
PleI GAGTC 2 cut(s) 223, 442
PpsI GAGTC 2 cut(s) 223, 442
Psp6I CCWGG 2 cut(s) 478, 667
PspGI CCWGG 2 cut(s) 478, 667
PspN4I GGNNCC 2 cut(s) 253, 558
PstNI CAGNNNCTG 2 cut(s) 71, 734
PsuI RGATCY 1 cut(s) 556
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 2 cut(s) 347, 542
RsaNI GTAC 2 cut(s) 346, 541
RseI CAYNNNNRTG 3 cut(s) 91, 357, 444
SapI GCTCTTC 1 cut(s) 357
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 7 cut(s) 69, 72, 75, 78, 270, 581, 659
Sau3AI GATC 4 cut(s) 134, 331, 556, 745
SchI GAGTC 2 cut(s) 223, 443
ScrFI CCNGG 2 cut(s) 480, 669
SfaNI GCATC 1 cut(s) 466
Sfr274I CTCGAG 1 cut(s) 618
SlaI CTCGAG 1 cut(s) 618
SmiMI CAYNNNNRTG 3 cut(s) 91, 357, 444
SmlI CTYRAG 1 cut(s) 618
SmoI CTYRAG 1 cut(s) 618
Sse9I AATT 2 cut(s) 409, 772
SsiI CCGC 4 cut(s) 49, 78, 578, 738
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 2 cut(s) 478, 667
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 619, 778
TasI AATT 2 cut(s) 409, 772
TauI GCSGC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 574
TseI GCWGC 6 cut(s) 68, 71, 74, 269, 580, 658
TspDTI ATGAA 5 cut(s) 250, 303, 305, 375, 636
TspRI CASTG 1 cut(s) 574
Van91I CCANNNNNTGG 1 cut(s) 734
XapI RAATTY 1 cut(s) 409
XceI RCATGY 1 cut(s) 371
XhoI CTCGAG 1 cut(s) 618
XmiI GTMKAC 1 cut(s) 297
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.