RLG00000009541

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000237
Physical Location & Seq
Forward (+)
54249739 .. 54251468
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009541

Sequence Viewer

Length: 327 bp
ATGTCATCTGTGGCTGACTGGGTGCAAGGGAGAGATGGCTACGCAGTTGCAAAGGCTGCCTGGATTTTTGATGACTGGAGTATTGAGAGGGAAGCAAAATCTGATTCAGAAAACAAAATGCAGGGGGAAAGAGAGAGAGGGAGAGAAGAAGGGTCTGGAGATGGGAGTGAGGAGGAGGGCGGTGGTGACGTTTTCATGGTAATGGGTTGCGGTGGTTCAGAGCCGCAGGTGGTGGTCAGCATTGAGCTCTTCTTTCTGGGTTTTCTTGGTTATAAAGAGGAAGGGGTTAAAGTTAACCCCTGGGATTTCAGGGTGTGTGTTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.89

Weight (kDa)

4.32

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AarI CACCTGC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 217
AciI CCGC 3 cut(s) 180, 210, 224
AjnI CCWGG 2 cut(s) 59, 299
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
Alw21I GWGCWC 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 197
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 29, 155
BciT130I CCWGG 2 cut(s) 61, 301
BfuAI ACCTGC 1 cut(s) 217
BisI GCNGC 2 cut(s) 57, 224
BlsI GCNGC 2 cut(s) 58, 225
Bme1390I CCNGG 2 cut(s) 61, 301
BmrFI CCNGG 2 cut(s) 61, 301
BmrI ACTGGG 1 cut(s) 28
BmuI ACTGGG 1 cut(s) 28
BpmI CTGGAG 2 cut(s) 97, 177
BsaJI CCNNGG 2 cut(s) 299, 300
Bse1I ACTGG 2 cut(s) 23, 80
BseBI CCWGG 2 cut(s) 61, 301
BseDI CCNNGG 2 cut(s) 299, 300
BseNI ACTGG 2 cut(s) 23, 80
BseRI GAGGAG 2 cut(s) 185, 188
BseXI GCAGC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 249
BspACI CCGC 3 cut(s) 180, 210, 224
BspMI ACCTGC 1 cut(s) 217
BspQI GCTCTTC 1 cut(s) 254
BsrI ACTGG 2 cut(s) 23, 80
BssECI CCNNGG 2 cut(s) 299, 300
Bst2UI CCWGG 2 cut(s) 61, 301
Bst6I CTCTTC 1 cut(s) 254
BstAPI GCANNNNNTGC 1 cut(s) 56
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 2 cut(s) 61, 301
BstSCI CCNGG 2 cut(s) 59, 299
BstV1I GCAGC 1 cut(s) 43
BveI ACCTGC 1 cut(s) 217
CviAII CATG 1 cut(s) 196
CviJI RGCY 5 cut(s) 14, 39, 56, 223, 247
CviKI_1 RGCY 5 cut(s) 14, 39, 56, 223, 247
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 59, 299
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 1 cut(s) 199
FaiI YATR 2 cut(s) 197, 273
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 57, 224
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 57, 224
GluI GCNGC 2 cut(s) 57, 224
GsuI CTGGAG 2 cut(s) 97, 177
Hin1II CATG 1 cut(s) 199
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 1 cut(s) 104
HpaI GTTAAC 1 cut(s) 295
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 3 cut(s) 103, 109, 220
Hpy188III TCNNGA 1 cut(s) 156
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 2 cut(s) 143, 275
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 3 cut(s) 25, 50, 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 1 cut(s) 199
KspAI GTTAAC 1 cut(s) 295
LguI GCTCTTC 1 cut(s) 254
Lsp1109I GCAGC 1 cut(s) 43
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 185
MboII GAAGA 2 cut(s) 158, 241
MhlI GDGCHC 1 cut(s) 249
MnlI CCTC 6 cut(s) 81, 131, 163, 166, 169, 271
MseI TTAA 3 cut(s) 288, 294, 325
MslI CAYNNNNRTG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 61, 301
MvaI CCWGG 2 cut(s) 61, 301
MwoI GCNNNNNNNGC 1 cut(s) 56
NlaIII CATG 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 185
PaqCI CACCTGC 1 cut(s) 217
PasI CCCWGGG 1 cut(s) 300
PciSI GCTCTTC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 2 cut(s) 58, 225
PsiI TTATAA 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 59, 299
PspGI CCWGG 2 cut(s) 59, 299
RseI CAYNNNNRTG 1 cut(s) 200
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 254
SaqAI TTAA 3 cut(s) 288, 294, 325
SatI GCNGC 2 cut(s) 57, 224
ScrFI CCNGG 2 cut(s) 61, 301
SduI GDGCHC 1 cut(s) 249
SetI ASST 3 cut(s) 192, 231, 249
SmiMI CAYNNNNRTG 1 cut(s) 200
SsiI CCGC 3 cut(s) 180, 210, 224
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 59, 299
TaiI ACGT 1 cut(s) 192
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 3 cut(s) 288, 294, 325
Tru9I TTAA 3 cut(s) 288, 294, 325
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.