RLG00000022273

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000237
Physical Location & Seq
Forward (+)
82136567 .. 82137865
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022273

Sequence Viewer

Length: 723 bp
ATGCGTCTCCAAGAGCTGTCTCTTATTTCCGACCCTAAATTCTGTCACCGCCACACCCTTCAAAACCCAAACACTCCCATCTGCGCCGTCTTCTGTGACACATCCCACCACCCCTTTCGTTTCATCCCTCTTGATGATCATGATCACATGCGTGGAACTAGTAGTACTAAACTACTAACCATGAAAGCCAAAACCCATCTGGCTACTCTCGTTACCACCGCTACTGGTGAACAAGTAGAACCCTATATCATCTCTATTGCTTTGGCCTTTGACCCTTCCAGATCACCTCAGTACAAGGTGGCATGTATATATGGTGAGGTAGCATACCTTCAGATAGATGAAGAACGTGACGATTTTATTCATAGTCTTCCTGACCTTTACGAGAAGGACATTTGCAAGAGGAGATCTAGACACTTTCGGGAGTCTGGTGATGGGCGCCATTTGCATCTTATTGATTTTTTTCAGCCCTGTCTTACTAAATTTGAAGTGTTGGAGATGGGAAGAGACTACTCGGCTGACAATAATAAAGAAGAGGAAAGTTCGTCTCTGTTGCTGCATACGCCTGGTAAACTCATTTCTTATAATCTTGAGAGCAAGGCCTTCAACTCTGTTGAGTTAACCCCCAAGGCCGGAGTTGATGATTCTCTCTTAAGAGTTGACGCAGCTTATTATCCTAAAGCATCTAATTATCCATATATGGAGACTTTGGCTTGTGTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

241

Amino Acids

27.4

Weight (kDa)

5.82

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AccB1I GGYRCC 1 cut(s) 435
AciI CCGC 2 cut(s) 49, 219
AcsI RAATTY 2 cut(s) 38, 479
AcuI CTGAAG 1 cut(s) 314
AcyI GRCGYC 1 cut(s) 436
AfaI GTAC 2 cut(s) 166, 293
AfiI CCNNNNNNNGG 1 cut(s) 629
AflII CTTAAG 1 cut(s) 649
AgsI TTSAA 3 cut(s) 62, 485, 604
AhlI ACTAGT 1 cut(s) 158
AjnI CCWGG 1 cut(s) 562
AleI CACNNNNGTG 1 cut(s) 150
AluBI AGCT 2 cut(s) 16, 665
AluI AGCT 2 cut(s) 16, 665
Alw26I GTCTC 5 cut(s) 11, 24, 498, 549, 695
AoxI GGCC 3 cut(s) 264, 597, 627
ApeKI GCWGC 2 cut(s) 553, 662
ApoI RAATTY 2 cut(s) 38, 479
AspLEI GCGC 2 cut(s) 86, 438
AsuHPI GGTGA 5 cut(s) 38, 239, 276, 326, 440
BanI GGYRCC 1 cut(s) 435
BarI GAAGNNNNNNTAC 2 cut(s) 312, 344
BbsI GAAGAC 2 cut(s) 82, 359
BbvI GCAGC 2 cut(s) 540, 674
BccI CCATC 4 cut(s) 86, 204, 425, 490
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 564
BclI TGATCA 2 cut(s) 136, 142
BcoDI GTCTC 5 cut(s) 11, 24, 498, 549, 695
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 2 cut(s) 159, 408
BfoI RGCGCY 1 cut(s) 439
BfrI CTTAAG 1 cut(s) 649
BglII AGATCT 1 cut(s) 404
BisI GCNGC 2 cut(s) 554, 663
BlsI GCNGC 2 cut(s) 555, 664
BmcAI AGTACT 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 564
BmiI GGNNCC 1 cut(s) 437
BmrFI CCNGG 1 cut(s) 564
BmsI GCATC 2 cut(s) 454, 689
BpiI GAAGAC 2 cut(s) 82, 359
BpuEI CTTGAG 1 cut(s) 608
BsaBI GATNNNNATC 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 436
BsaJI CCNNGG 1 cut(s) 624
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse1I ACTGG 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 1 cut(s) 624
BseGI GGATG 2 cut(s) 101, 123
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 415
BseXI GCAGC 2 cut(s) 540, 674
BshFI GGCC 3 cut(s) 266, 599, 629
BshNI GGYRCC 1 cut(s) 435
BsiSI CCGG 1 cut(s) 630
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 5 cut(s) 11, 24, 498, 549, 695
BsmBI CGTCTC 2 cut(s) 11, 549
BsnI GGCC 3 cut(s) 266, 599, 629
Bsp143I GATC 4 cut(s) 136, 142, 281, 404
BspACI CCGC 2 cut(s) 49, 219
BspANI GGCC 3 cut(s) 266, 599, 629
BspCNI CTCAG 1 cut(s) 301
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 435
BspTI CTTAAG 1 cut(s) 649
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 624
BssMI GATC 4 cut(s) 136, 142, 281, 404
BssNI GRCGYC 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 624
Bst2UI CCWGG 1 cut(s) 564
Bst6I CTCTTC 2 cut(s) 496, 525
BstACI GRCGYC 1 cut(s) 436
BstAFI CTTAAG 1 cut(s) 649
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 2 cut(s) 101, 123
BstH2I RGCGCY 1 cut(s) 439
BstHHI GCGC 2 cut(s) 86, 438
BstKTI GATC 4 cut(s) 139, 145, 284, 407
BstMAI GTCTC 5 cut(s) 11, 24, 498, 549, 695
BstMBI GATC 4 cut(s) 136, 142, 281, 404
BstMWI GCNNNNNNNGC 2 cut(s) 442, 559
BstNI CCWGG 1 cut(s) 564
BstNSI RCATGY 2 cut(s) 151, 306
BstSCI CCNGG 1 cut(s) 562
BstV1I GCAGC 2 cut(s) 540, 674
BstV2I GAAGAC 2 cut(s) 82, 359
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuRI GGCC 3 cut(s) 266, 599, 629
BtsCI GGATG 2 cut(s) 101, 123
CciI TCATGA 1 cut(s) 139
CfoI GCGC 2 cut(s) 86, 438
CseI GACGC 1 cut(s) 668
Csp6I GTAC 2 cut(s) 165, 292
CviAII CATG 4 cut(s) 140, 148, 181, 303
CviQI GTAC 2 cut(s) 165, 292
DdeI CTNAG 1 cut(s) 288
DinI GGCGCC 1 cut(s) 437
DpnI GATC 4 cut(s) 138, 144, 283, 406
DpnII GATC 4 cut(s) 136, 142, 281, 404
Eam1104I CTCTTC 2 cut(s) 496, 525
EarI CTCTTC 2 cut(s) 496, 525
Eco130I CCWWGG 1 cut(s) 624
Eco147I AGGCCT 1 cut(s) 599
Eco57I CTGAAG 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 624
EgeI GGCGCC 1 cut(s) 437
EheI GGCGCC 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 624
Esp3I CGTCTC 2 cut(s) 11, 549
FaeI CATG 4 cut(s) 143, 151, 184, 306
FatI CATG 4 cut(s) 139, 147, 180, 302
FbaI TGATCA 2 cut(s) 136, 142
Fnu4HI GCNGC 2 cut(s) 554, 663
FokI GGATG 2 cut(s) 88, 110
Fsp4HI GCNGC 2 cut(s) 554, 663
FspBI CTAG 2 cut(s) 159, 408
GlaI GCGC 2 cut(s) 85, 437
GluI GCNGC 2 cut(s) 554, 663
HaeII RGCGCY 1 cut(s) 439
HaeIII GGCC 3 cut(s) 266, 599, 629
HapII CCGG 1 cut(s) 630
HgaI GACGC 1 cut(s) 668
HhaI GCGC 2 cut(s) 86, 438
Hin1I GRCGYC 1 cut(s) 436
Hin1II CATG 4 cut(s) 143, 151, 184, 306
Hin6I GCGC 2 cut(s) 84, 436
HinP1I GCGC 2 cut(s) 84, 436
HincII GTYRAC 2 cut(s) 618, 658
HindII GTYRAC 2 cut(s) 618, 658
HinfI GANTC 2 cut(s) 422, 641
HpaI GTTAAC 1 cut(s) 618
HpaII CCGG 1 cut(s) 630
HphI GGTGA 5 cut(s) 38, 239, 276, 326, 440
Hpy166II GTNNAC 4 cut(s) 230, 569, 618, 658
Hpy188I TCNGA 2 cut(s) 31, 333
Hpy188III TCNNGA 7 cut(s) 131, 140, 279, 371, 408, 419, 587
Hpy8I GTNNAC 4 cut(s) 230, 569, 618, 658
HpyAV CCTTC 5 cut(s) 68, 285, 338, 379, 610
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 3 cut(s) 396, 445, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 442, 559
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 346
Hsp92I GRCGYC 1 cut(s) 436
Hsp92II CATG 4 cut(s) 143, 151, 184, 306
HspAI GCGC 2 cut(s) 84, 436
KasI GGCGCC 1 cut(s) 435
Ksp22I TGATCA 2 cut(s) 136, 142
KspAI GTTAAC 1 cut(s) 618
Kzo9I GATC 4 cut(s) 136, 142, 281, 404
LpnPI CCDG 9 cut(s) 185, 210, 292, 384, 411, 481, 549, 576, 643
Lsp1109I GCAGC 2 cut(s) 540, 674
LweI GCATC 2 cut(s) 454, 689
MaeI CTAG 2 cut(s) 159, 408
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 4 cut(s) 44, 95, 211, 347
MalI GATC 4 cut(s) 138, 144, 283, 406
MboI GATC 4 cut(s) 136, 142, 281, 404
MboII GAAGA 5 cut(s) 82, 353, 359, 513, 542
MflI RGATCY 1 cut(s) 404
MluCI AATT 3 cut(s) 38, 479, 685
Mly113I GGCGCC 1 cut(s) 436
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 54, 471
MnlI CCTC 5 cut(s) 138, 297, 310, 393, 526
MseI TTAA 2 cut(s) 617, 650
MslI CAYNNNNRTG 1 cut(s) 150
MspCI CTTAAG 1 cut(s) 649
MspI CCGG 1 cut(s) 630
MspR9I CCNGG 1 cut(s) 564
MvaI CCWGG 1 cut(s) 564
MwoI GCNNNNNNNGC 2 cut(s) 442, 559
NarI GGCGCC 1 cut(s) 436
NdeII GATC 4 cut(s) 136, 142, 281, 404
NlaIII CATG 4 cut(s) 143, 151, 184, 306
NlaIV GGNNCC 1 cut(s) 437
NmeAIII GCCGAG 1 cut(s) 491
NmuCI GTSAC 3 cut(s) 44, 95, 347
NspI RCATGY 2 cut(s) 151, 306
OliI CACNNNNGTG 1 cut(s) 150
PagI TCATGA 1 cut(s) 139
PceI AGGCCT 1 cut(s) 599
PfeI GAWTC 1 cut(s) 641
PkrI GCNGC 2 cut(s) 555, 664
PleI GAGTC 1 cut(s) 430
PluTI GGCGCC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 430
PsiI TTATAA 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 1 cut(s) 437
PsrI GAACNNNNNNTAC 2 cut(s) 148, 180
PsuI RGATCY 1 cut(s) 404
RsaI GTAC 2 cut(s) 166, 293
RsaNI GTAC 2 cut(s) 165, 292
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 2 cut(s) 617, 650
SatI GCNGC 2 cut(s) 554, 663
Sau3AI GATC 4 cut(s) 136, 142, 281, 404
ScaI AGTACT 1 cut(s) 166
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 564
SetI ASST 8 cut(s) 18, 289, 300, 321, 330, 349, 378, 667
SfaNI GCATC 2 cut(s) 454, 689
SfoI GGCGCC 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 587, 649
SmoI CTYRAG 2 cut(s) 587, 649
SpeI ACTAGT 1 cut(s) 158
Sse9I AATT 3 cut(s) 38, 479, 685
SseBI AGGCCT 1 cut(s) 599
SsiI CCGC 2 cut(s) 49, 219
SspDI GGCGCC 1 cut(s) 435
SspMI CTAG 2 cut(s) 159, 408
StuI AGGCCT 1 cut(s) 599
StyD4I CCNGG 1 cut(s) 562
StyI CCWWGG 1 cut(s) 624
TaiI ACGT 1 cut(s) 349
TasI AATT 3 cut(s) 38, 479, 685
TatI WGTACW 2 cut(s) 164, 291
TfiI GAWTC 1 cut(s) 641
Tru1I TTAA 2 cut(s) 617, 650
Tru9I TTAA 2 cut(s) 617, 650
TseFI GTSAC 3 cut(s) 44, 95, 347
TseI GCWGC 2 cut(s) 553, 662
Tsp45I GTSAC 3 cut(s) 44, 95, 347
TspDTI ATGAA 4 cut(s) 112, 197, 350, 354
Vha464I CTTAAG 1 cut(s) 649
XapI RAATTY 2 cut(s) 38, 479
XbaI TCTAGA 1 cut(s) 407
XceI RCATGY 2 cut(s) 151, 306
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XspI CTAG 2 cut(s) 159, 408
ZrmI AGTACT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.