Rh4DG060400

tRNA (Guanine-1)-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000237
Physical Location & Seq
Forward (+)
9133521 .. 9133835
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG060400.1

Sequence Viewer

Length: 315 bp
ATGGACAGAAAGCCTCGGAATTGCTCGTCAGCAGCACTATCGAAGAGTTCCCTGAAGAAGCTGTTAAAGCAGCAGCGGTGGGAAGTGAAGAAGAAGAGAGAGGGAGAGCGGAAGCGAAAGGAATGGGAGGAGACTGCCGAGTTTGAGCGAAGAGGAGAGAGGTTGAAGATGATAGAGTCCAGGAAGAGGTTGAGGAAAGAGAGAATGGACAAGAGGTCAGAGGAGTGTGGACAGAAGATGATGGTGATTGATCTCGAATTCTCTCATTGGAATTATCACCATGAAGAAAGCAGAGGAGCAGGCAAAGCTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
tRNA_m1G_MT

Protein Analysis

104

Amino Acids

12.66

Weight (kDa)

10.05

Isoelectric Point (pI)

72.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 109
AciI CCGC 2 cut(s) 76, 109
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 186
AgsI TTSAA 1 cut(s) 166
AhdI GACNNNNNGTC 1 cut(s) 214
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 2 cut(s) 61, 308
AluI AGCT 2 cut(s) 61, 308
Alw26I GTCTC 1 cut(s) 125
ApeKI GCWGC 3 cut(s) 32, 70, 73
ApoI RAATTY 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 256, 269
BbvI GCAGC 3 cut(s) 44, 82, 85
BccI CCATC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 21, 55
BciT130I CCWGG 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 125
BisI GCNGC 3 cut(s) 33, 71, 74
BlsI GCNGC 3 cut(s) 34, 72, 75
Bme1390I CCNGG 1 cut(s) 181
BmeRI GACNNNNNGTC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 186
BseRI GAGGAG 4 cut(s) 143, 168, 236, 309
BseXI GCAGC 3 cut(s) 44, 82, 85
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 250
BspACI CCGC 2 cut(s) 76, 109
BsrBI CCGCTC 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 181
Bst6I CTCTTC 4 cut(s) 38, 89, 145, 179
BstC8I GCNNGC 1 cut(s) 301
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 67, 305
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BstV1I GCAGC 3 cut(s) 44, 82, 85
Cac8I GCNNGC 1 cut(s) 301
CviAII CATG 1 cut(s) 281
CviJI RGCY 3 cut(s) 13, 61, 308
CviKI_1 RGCY 3 cut(s) 13, 61, 308
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
DriI GACNNNNNGTC 1 cut(s) 214
Eam1104I CTCTTC 4 cut(s) 38, 89, 145, 179
Eam1105I GACNNNNNGTC 1 cut(s) 214
EarI CTCTTC 4 cut(s) 38, 89, 145, 179
Eco57I CTGAAG 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 179
FaeI CATG 1 cut(s) 284
FaiI YATR 1 cut(s) 282
FatI CATG 1 cut(s) 280
Fnu4HI GCNGC 3 cut(s) 33, 71, 74
Fsp4HI GCNGC 3 cut(s) 33, 71, 74
GluI GCNGC 3 cut(s) 33, 71, 74
Hin1II CATG 1 cut(s) 284
HinfI GANTC 1 cut(s) 176
HphI GGTGA 2 cut(s) 256, 269
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 2 cut(s) 18, 220
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 305
Hsp92II CATG 1 cut(s) 284
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 2 cut(s) 296, 313
LpnPI CCDG 4 cut(s) 65, 166, 193, 285
Lsp1109I GCAGC 3 cut(s) 44, 82, 85
MalI GATC 1 cut(s) 252
MbiI CCGCTC 1 cut(s) 109
MboI GATC 1 cut(s) 250
MluCI AATT 3 cut(s) 19, 257, 271
MlyI GAGTC 1 cut(s) 185
MseI TTAA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 76
MspR9I CCNGG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 2 cut(s) 67, 305
NdeII GATC 1 cut(s) 250
NlaIII CATG 1 cut(s) 284
NmeAIII GCCGAG 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 179
PkrI GCNGC 3 cut(s) 34, 72, 75
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 3 cut(s) 33, 71, 74
Sau3AI GATC 1 cut(s) 250
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 181
SetI ASST 5 cut(s) 63, 164, 191, 218, 310
SgeI CNNG 9 cut(s) 27, 37, 64, 151, 192, 193, 223, 266, 293
Sse9I AATT 3 cut(s) 19, 257, 271
SsiI CCGC 2 cut(s) 76, 109
StyD4I CCNGG 1 cut(s) 179
TaqI TCGA 2 cut(s) 41, 255
TasI AATT 3 cut(s) 19, 257, 271
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TseI GCWGC 3 cut(s) 32, 70, 73
TspDTI ATGAA 1 cut(s) 297
XapI RAATTY 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.