FvH4_6g52062

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000237
Physical Location & Seq
Reverse (-)
38466864 .. 38468770
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52062.t1

Sequence Viewer

Length: 1215 bp
ATGAAACCTTGTTTACAGAGATCGAATATGGGCCAGGGATTCTACCTAAAACCCTGCACCACCACCAGCAAAACCTTACCAGAAACCGTAGCCAGCATAGAAGAACTCCTTACCGAAATCCTTTTGCGTGTGCCAGCTAAACCACTGCTCCGCTTCAAATGTGTCTCCAAGCGTTGGCTGTCTCTTATCTCAAACCCCAAATTTTGTCACCGCCACACCCTTCAAAACCCAAACTCCTCCATCTCTGCTGTCTTTCGTCACAGTTCCAAGAACTTCTCTTTCATTTCAATTCCTCCTGATCATGATCCCAGTGGCCATGACCTCATTTCAGCTCGCTGGAATCCTCTTAGTGTCATTGCAAACCGATATGGCCACATTGATATTATCCACTCCTGCAACGGCCTCTTCTTGTGTTGTCCCCATGGTGAAAAAAATACTGGTATATCCACATGTTTCGTTCTCAATCCCACAACTAACCAGTTCTTGACACTCGCATTTCCGCGAGCAGAACCATCCTACATCATGGGGTGCTCTTTGGCTTTTGACCCTTCCAAATCTCCTCATTACAAGGTTATCTGCATTGACTCCATCTATGGAGTAGTAGAATGTCAGCAGTACAAAATACTGATATATTCGTCTGAGACTCGAACTTGGAGGCTTCTCGATTCTATTTTCAACATGAATCATCGTATTGACTACGAAAATGGTGTCTACTGGAACGGTGCAATTCACTGGATAGGCCTATTTTGTGAGATCTCATACTATCACGTCGACGAAGAGCGTGTTAAGTTTGTTAAGAGTACTCCTCATTGTTACCAGAAGAAATGGCAAGACAGGGAGTACAGTTATTTTAAGGAGTCCAGTGGCGGTCATTTGCATCTCATTGATATTTATAAGCCCTGTCTTACTAAGTTCGAAGTGTTGGAGATGGGAAGAGACTATTCTGGCTGGTTTGTCAAGTACAATGTTGATCTTGATCCCTTGTGCACTTCCTTCAGTACGGGCTTCCGTTATGGAGTTTATTTTGTTCTCTTTCTTGATCGAGTCGGAAATGAGGAAGAGGACTCTTCATCTCTATTCCTGCATATACCTGGTCAAGTCGTCTCGTGGAATCTTAAGAGTAAGACCTTCAAATCTTTCCAGTTAACTAATGATCAGGATTTCCTTGTGGAGGAGAACAATTATTTGTATAAAGAGACTTTGGCTTGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

405

Amino Acids

46.7

Weight (kDa)

7.53

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 34 - 70 4.3e-08 F-box domain
b-prop_At3g26010-like PF24750 128 - 246 9.3e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 894
AccB7I CCANNNNNTGG 1 cut(s) 174
AccI GTMKAC 2 cut(s) 711, 771
AccII CGCG 1 cut(s) 502
AciI CCGC 4 cut(s) 151, 211, 500, 867
AclWI GGATC 2 cut(s) 299, 971
AcoI YGGCCR 2 cut(s) 313, 370
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 979
AfaI GTAC 5 cut(s) 617, 802, 842, 962, 1000
AfiI CCNNNNNNNGG 2 cut(s) 174, 1171
AflII CTTAAG 1 cut(s) 1115
AflIII ACRYGT 1 cut(s) 449
AgsI TTSAA 5 cut(s) 157, 224, 288, 676, 1132
AjiI CACGTC 1 cut(s) 769
AjnI CCWGG 2 cut(s) 33, 1090
AluBI AGCT 2 cut(s) 137, 332
AluI AGCT 2 cut(s) 137, 332
Alw21I GWGCWC 2 cut(s) 533, 989
Alw26I GTCTC 6 cut(s) 169, 186, 635, 930, 1108, 1190
Alw44I GTGCAC 1 cut(s) 985
AlwI GGATC 2 cut(s) 299, 971
AoxI GGCC 5 cut(s) 31, 313, 370, 400, 739
ApaLI GTGCAC 1 cut(s) 985
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 693, 725
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 2 cut(s) 200, 437
AsuII TTCGAA 1 cut(s) 915
BaeGI GKGCMC 1 cut(s) 989
BalI TGGCCA 2 cut(s) 315, 372
BauI CACGAG 1 cut(s) 1105
Bbv12I GWGCWC 2 cut(s) 533, 989
BccI CCATC 4 cut(s) 248, 520, 596, 922
BceAI ACGGC 1 cut(s) 415
BciT130I CCWGG 2 cut(s) 35, 1092
BclI TGATCA 2 cut(s) 298, 1153
BcoDI GTCTC 6 cut(s) 169, 186, 635, 930, 1108, 1190
BfrI CTTAAG 1 cut(s) 1115
BglII AGATCT 1 cut(s) 753
BmcAI AGTACT 1 cut(s) 802
Bme1390I CCNGG 2 cut(s) 35, 1092
BmgBI CACGTC 1 cut(s) 769
BmgT120I GGNCC 1 cut(s) 31
BmrFI CCNGG 2 cut(s) 35, 1092
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 1 cut(s) 886
BmuI ACTGGG 1 cut(s) 303
BplI GAGNNNNNCTC 2 cut(s) 790, 822
Bpu14I TTCGAA 1 cut(s) 915
BsaBI GATNNNNATC 2 cut(s) 303, 975
BsaJI CCNNGG 2 cut(s) 34, 421
BsaXI ACNNNNNCTCC 4 cut(s) 132, 162, 218, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 1171
Bse1I ACTGG 7 cut(s) 309, 442, 478, 719, 737, 861, 1141
Bse3DI GCAATG 1 cut(s) 354
Bse8I GATNNNNATC 2 cut(s) 303, 975
BseBI CCWGG 2 cut(s) 35, 1092
BseDI CCNNGG 2 cut(s) 34, 421
BseGI GGATG 1 cut(s) 512
BseJI GATNNNNATC 2 cut(s) 303, 975
BseLI CCNNNNNNNGG 2 cut(s) 174, 1171
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 1 cut(s) 630
BseNI ACTGG 7 cut(s) 309, 442, 478, 719, 737, 861, 1141
BseRI GAGGAG 4 cut(s) 226, 549, 795, 1187
BseSI GKGCMC 1 cut(s) 989
BsgI GTGCAG 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 502
BshFI GGCC 5 cut(s) 33, 315, 372, 402, 741
BsiHKAI GWGCWC 2 cut(s) 533, 989
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 2 cut(s) 174, 1171
BsmAI GTCTC 6 cut(s) 169, 186, 635, 930, 1108, 1190
BsmBI CGTCTC 1 cut(s) 1108
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 5 cut(s) 33, 315, 372, 402, 741
Bsp119I TTCGAA 1 cut(s) 915
Bsp1286I GDGCHC 2 cut(s) 533, 989
Bsp143I GATC 8 cut(s) 20, 298, 304, 753, 970, 976, 1039, 1153
Bsp19I CCATGG 1 cut(s) 421
BspACI CCGC 4 cut(s) 151, 211, 500, 867
BspANI GGCC 5 cut(s) 33, 315, 372, 402, 741
BspCNI CTCAG 1 cut(s) 631
BspFNI CGCG 1 cut(s) 502
BspHI TCATGA 1 cut(s) 301
BspPI GGATC 2 cut(s) 299, 971
BspQI GCTCTTC 1 cut(s) 771
BspT104I TTCGAA 1 cut(s) 915
BspTI CTTAAG 1 cut(s) 1115
BsrDI GCAATG 1 cut(s) 354
BsrI ACTGG 7 cut(s) 309, 442, 478, 719, 737, 861, 1141
BssECI CCNNGG 2 cut(s) 34, 421
BssMI GATC 8 cut(s) 20, 298, 304, 753, 970, 976, 1039, 1153
BssSI CACGAG 1 cut(s) 1105
BssT1I CCWWGG 1 cut(s) 421
Bst2BI CACGAG 1 cut(s) 1105
Bst2UI CCWGG 2 cut(s) 35, 1092
Bst4CI ACNGT 4 cut(s) 88, 263, 722, 845
Bst6I CTCTTC 5 cut(s) 410, 771, 928, 1053, 1072
BstAFI CTTAAG 1 cut(s) 1115
BstBI TTCGAA 1 cut(s) 915
BstC8I GCNNGC 4 cut(s) 94, 135, 334, 504
BstDEI CTNAG 3 cut(s) 347, 639, 909
BstDSI CCRYGG 1 cut(s) 421
BstENI CCTNNNNNAGG 1 cut(s) 1169
BstF5I GGATG 1 cut(s) 512
BstFNI CGCG 1 cut(s) 502
BstKTI GATC 8 cut(s) 23, 301, 307, 756, 973, 979, 1042, 1156
BstMAI GTCTC 6 cut(s) 169, 186, 635, 930, 1108, 1190
BstMBI GATC 8 cut(s) 20, 298, 304, 753, 970, 976, 1039, 1153
BstNI CCWGG 2 cut(s) 35, 1092
BstNSI RCATGY 1 cut(s) 453
BstSCI CCNGG 2 cut(s) 33, 1090
BstSLI GKGCMC 1 cut(s) 989
BstUI CGCG 1 cut(s) 502
BstX2I RGATCY 1 cut(s) 753
BstYI RGATCY 1 cut(s) 753
BsuRI GGCC 5 cut(s) 33, 315, 372, 402, 741
BtgI CCRYGG 1 cut(s) 421
BtrI CACGTC 1 cut(s) 769
BtsCI GGATG 1 cut(s) 512
BtsI GCAGTG 1 cut(s) 143
BtsIMutI CAGTG 4 cut(s) 143, 316, 730, 868
Cac8I GCNNGC 4 cut(s) 94, 135, 334, 504
CciI TCATGA 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 31
CsiI ACCWGGT 1 cut(s) 1090
Csp6I GTAC 5 cut(s) 616, 801, 841, 961, 999
CviAII CATG 6 cut(s) 302, 317, 422, 450, 523, 679
CviQI GTAC 5 cut(s) 616, 801, 841, 961, 999
DdeI CTNAG 3 cut(s) 347, 639, 909
DpnI GATC 8 cut(s) 22, 300, 306, 755, 972, 978, 1041, 1155
DpnII GATC 8 cut(s) 20, 298, 304, 753, 970, 976, 1039, 1153
EaeI YGGCCR 2 cut(s) 313, 370
Eam1104I CTCTTC 5 cut(s) 410, 771, 928, 1053, 1072
EarI CTCTTC 5 cut(s) 410, 771, 928, 1053, 1072
Eco130I CCWWGG 1 cut(s) 421
Eco147I AGGCCT 1 cut(s) 741
Eco57I CTGAAG 1 cut(s) 979
EcoNI CCTNNNNNAGG 1 cut(s) 1169
EcoRII CCWGG 2 cut(s) 33, 1090
EcoT14I CCWWGG 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 421
Esp3I CGTCTC 1 cut(s) 1108
FaeI CATG 6 cut(s) 305, 320, 425, 453, 526, 682
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FaqI GGGAC 1 cut(s) 402
FatI CATG 6 cut(s) 301, 316, 421, 449, 522, 678
FbaI TGATCA 2 cut(s) 298, 1153
FblI GTMKAC 2 cut(s) 711, 771
FokI GGATG 1 cut(s) 499
HaeIII GGCC 5 cut(s) 33, 315, 372, 402, 741
Hin1II CATG 6 cut(s) 305, 320, 425, 453, 526, 682
HincII GTYRAC 2 cut(s) 772, 1146
HindII GTYRAC 2 cut(s) 772, 1146
HpaI GTTAAC 1 cut(s) 1146
HphI GGTGA 2 cut(s) 200, 437
Hpy166II GTNNAC 5 cut(s) 14, 712, 772, 987, 1146
Hpy188I TCNGA 2 cut(s) 640, 1049
Hpy188III TCNNGA 7 cut(s) 296, 302, 484, 662, 974, 1037, 1157
Hpy8I GTNNAC 5 cut(s) 14, 712, 772, 987, 1146
Hpy99I CGWCG 2 cut(s) 773, 776
HpyAV CCTTC 4 cut(s) 230, 558, 1003, 1138
HpyCH4III ACNGT 4 cut(s) 88, 263, 722, 845
HpyCH4IV ACGT 1 cut(s) 768
HpyCH4V TGCA 8 cut(s) 57, 359, 396, 579, 725, 877, 987, 1084
HpyF3I CTNAG 3 cut(s) 347, 639, 909
HpySE526I ACGT 1 cut(s) 768
Hsp92II CATG 6 cut(s) 305, 320, 425, 453, 526, 682
Ksp22I TGATCA 2 cut(s) 298, 1153
KspAI GTTAAC 1 cut(s) 1146
Kzo9I GATC 8 cut(s) 20, 298, 304, 753, 970, 976, 1039, 1153
LguI GCTCTTC 1 cut(s) 771
LmnI GCTCC 1 cut(s) 153
LweI GCATC 1 cut(s) 886
MabI ACCWGGT 1 cut(s) 1090
MaeII ACGT 1 cut(s) 768
MaeIII GTNAC 3 cut(s) 206, 257, 812
MalI GATC 8 cut(s) 22, 300, 306, 755, 972, 978, 1041, 1155
MboI GATC 8 cut(s) 20, 298, 304, 753, 970, 976, 1039, 1153
MboII GAAGA 7 cut(s) 113, 397, 788, 832, 945, 1059, 1070
MflI RGATCY 1 cut(s) 753
MhlI GDGCHC 2 cut(s) 533, 989
MlsI TGGCCA 2 cut(s) 315, 372
MluCI AATT 4 cut(s) 200, 288, 726, 1180
MluNI TGGCCA 2 cut(s) 315, 372
MlyI GAGTC 5 cut(s) 578, 637, 866, 1053, 1058
MmeI TCCRAC 2 cut(s) 903, 1027
Mox20I TGGCCA 2 cut(s) 315, 372
MscI TGGCCA 2 cut(s) 315, 372
MseI TTAA 5 cut(s) 786, 795, 852, 1116, 1145
Msp20I TGGCCA 2 cut(s) 315, 372
MspCI CTTAAG 1 cut(s) 1115
MspR9I CCNGG 2 cut(s) 35, 1092
MvaI CCWGG 2 cut(s) 35, 1092
MvnI CGCG 1 cut(s) 502
NcoI CCATGG 1 cut(s) 421
NdeII GATC 8 cut(s) 20, 298, 304, 753, 970, 976, 1039, 1153
NlaIII CATG 6 cut(s) 305, 320, 425, 453, 526, 682
NmuCI GTSAC 2 cut(s) 206, 257
NspI RCATGY 1 cut(s) 453
NspV TTCGAA 1 cut(s) 915
PagI TCATGA 1 cut(s) 301
PceI AGGCCT 1 cut(s) 741
PciI ACATGT 1 cut(s) 449
PciSI GCTCTTC 1 cut(s) 771
PfeI GAWTC 5 cut(s) 39, 340, 665, 682, 1111
PflMI CCANNNNNTGG 1 cut(s) 174
PleI GAGTC 5 cut(s) 578, 637, 865, 1052, 1058
PpsI GAGTC 5 cut(s) 578, 637, 865, 1052, 1058
PscI ACATGT 1 cut(s) 449
PsiI TTATAA 1 cut(s) 894
Psp6I CCWGG 2 cut(s) 33, 1090
PspGI CCWGG 2 cut(s) 33, 1090
PspPI GGNCC 1 cut(s) 31
PsuI RGATCY 1 cut(s) 753
RsaI GTAC 5 cut(s) 617, 802, 842, 962, 1000
RsaNI GTAC 5 cut(s) 616, 801, 841, 961, 999
SalI GTCGAC 1 cut(s) 770
SapI GCTCTTC 1 cut(s) 771
SaqAI TTAA 5 cut(s) 786, 795, 852, 1116, 1145
Sau3AI GATC 8 cut(s) 20, 298, 304, 753, 970, 976, 1039, 1153
Sau96I GGNCC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 802
SchI GAGTC 5 cut(s) 578, 637, 866, 1053, 1058
ScrFI CCNGG 2 cut(s) 35, 1092
SduI GDGCHC 2 cut(s) 533, 989
SexAI ACCWGGT 1 cut(s) 1090
SfaNI GCATC 1 cut(s) 886
SfuI TTCGAA 1 cut(s) 915
SgrDI CGTCGACG 1 cut(s) 770
SmlI CTYRAG 1 cut(s) 1115
SmoI CTYRAG 1 cut(s) 1115
Sse9I AATT 4 cut(s) 200, 288, 726, 1180
SseBI AGGCCT 1 cut(s) 741
SsiI CCGC 4 cut(s) 151, 211, 500, 867
StuI AGGCCT 1 cut(s) 741
StyD4I CCNGG 2 cut(s) 33, 1090
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 4 cut(s) 88, 263, 722, 845
TaiI ACGT 1 cut(s) 771
TaqI TCGA 6 cut(s) 23, 646, 663, 771, 915, 1042
TasI AATT 4 cut(s) 200, 288, 726, 1180
TatI WGTACW 4 cut(s) 615, 800, 840, 960
TfiI GAWTC 5 cut(s) 39, 340, 665, 682, 1111
Tru1I TTAA 5 cut(s) 786, 795, 852, 1116, 1145
Tru9I TTAA 5 cut(s) 786, 795, 852, 1116, 1145
TscAI CASTG 4 cut(s) 150, 316, 737, 868
TseFI GTSAC 2 cut(s) 206, 257
Tsp45I GTSAC 2 cut(s) 206, 257
TspDTI ATGAA 4 cut(s) 17, 271, 695, 1059
TspGWI ACGGA 1 cut(s) 998
TspRI CASTG 4 cut(s) 150, 316, 737, 868
Van91I CCANNNNNTGG 1 cut(s) 174
Vha464I CTTAAG 1 cut(s) 1115
VneI GTGCAC 1 cut(s) 985
XagI CCTNNNNNAGG 1 cut(s) 1169
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 453
XmiI GTMKAC 2 cut(s) 711, 771
ZrmI AGTACT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.