FvH4_6g52880

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000237
Physical Location & Seq
Reverse (-)
38844405 .. 38845271
867 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52880.t1

Sequence Viewer

Length: 867 bp
ATGATTATCCAGTCCTGTAATGGCCTCTTCTTATGCCGTCCCATCAAAACTAGTGACACTACACTTTATGTTCTCAATCCCACAACCAAACAGTTCTCCAGACATGCTATTCCGGCTGCTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTTCGTCTGGTCAACCATGTGTTCTCGTCGGTTACGCTTTGGCTTTCAACCCTTCCAAATCACCTCATTACAAGTTGCTCTTCCTTCAAGAGGGTAACCATATCCTTAACTACCACATACATATATATTCATCTGAGACACGAAGTTGGAGACTTCTCAGTTCTTGCTTTGTAAGGCTACCTCTCGTCAACTACGACCAAGCGGTATACTGCAATGGCGCAGTTCATTGGGTAGGGTTGGATAATGAGATCTCGTACTATCACATAGATGATGAGCGTGTTAGAAATGTTTTTTATCCTCCTCCTCCTCCCAAGAAACGCGAGTCGAGAATGTTTAGATATTTTCAGGAGTCTCATTGTGGCAGCCATTTGCATCTTATTGATATCTATGTATCTCATTTGACTCGATTCGAGGTGTTGGAGATGGGGAGAGACTATTCTGGTTGGTCCCTCAAGTACCATGTTGAACTTGATCCCCAGTTGACTGGCTTCCCGTGGCTCAGGTGGTGTCAATTTACTGTTCTCTTTCTTGTTCCGGAGGAAGCTGGAGAGTTAAGTTCCTCTCTGTTGCTGCATAGTCCCGGCAAAGTGATCTCTTATAATTTCAAGAGTAACATCTTCAAATCCTTTGAGCTAACTTCCAGTCACGGTGTTGATGATTCCACACGACGAGTTTATAACCGGAGTCATCGATATATGGCGACTTTGGCTTGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

289

Amino Acids

32.93

Weight (kDa)

8.56

Isoelectric Point (pI)

57.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 4 - 153 1.9e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 747, 825
AccI GTMKAC 1 cut(s) 354
AccII CGCG 1 cut(s) 468
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 1 cut(s) 350
AclWI GGATC 1 cut(s) 614
AfaI GTAC 2 cut(s) 404, 605
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 5 cut(s) 196, 236, 614, 754, 769
AhlI ACTAGT 1 cut(s) 50
AluBI AGCT 2 cut(s) 692, 781
AluI AGCT 2 cut(s) 692, 781
Alw26I GTCTC 4 cut(s) 278, 292, 504, 573
AlwI GGATC 1 cut(s) 614
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 1 cut(s) 22
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 594
AsuC2I CCSGG 1 cut(s) 729
AsuHPI GGTGA 1 cut(s) 201
AvaII GGWCC 1 cut(s) 594
BccI CCATC 2 cut(s) 50, 565
BceAI ACGGC 1 cut(s) 21
BcnI CCSGG 1 cut(s) 729
BcoDI GTCTC 4 cut(s) 278, 292, 504, 573
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 1 cut(s) 51
BglII AGATCT 1 cut(s) 396
Bme1390I CCNGG 1 cut(s) 729
Bme18I GGWCC 1 cut(s) 594
BmgT120I GGNCC 1 cut(s) 594
BmiI GGNNCC 1 cut(s) 596
BmrFI CCNGG 1 cut(s) 729
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 1 cut(s) 529
BmuI ACTGGG 1 cut(s) 619
BpmI CTGGAG 2 cut(s) 82, 714
Bpu10I CCTNAGC 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 729
Bsa29I ATCGAT 1 cut(s) 838
BsaJI CCNNGG 1 cut(s) 641
BsaWI WCCGGW 2 cut(s) 682, 828
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 4 cut(s) 10, 625, 637, 789
Bse3DI GCAATG 1 cut(s) 367
BseAI TCCGGA 1 cut(s) 682
BseCI ATCGAT 1 cut(s) 838
BseDI CCNNGG 1 cut(s) 641
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 367
BseMII CTCAG 3 cut(s) 273, 319, 661
BseNI ACTGG 4 cut(s) 10, 625, 637, 789
BseRI GAGGAG 3 cut(s) 438, 441, 444
Bsh1236I CGCG 1 cut(s) 468
BshFI GGCC 1 cut(s) 24
BshVI ATCGAT 1 cut(s) 838
BsiSI CCGG 4 cut(s) 113, 683, 729, 829
BslFI GGGAC 3 cut(s) 24, 580, 711
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 4 cut(s) 278, 292, 504, 573
BsmFI GGGAC 3 cut(s) 24, 580, 711
BsnI GGCC 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 682
Bsp143I GATC 3 cut(s) 396, 619, 738
BspACI CCGC 1 cut(s) 350
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 3 cut(s) 274, 318, 660
BspDI ATCGAT 1 cut(s) 838
BspEI TCCGGA 1 cut(s) 682
BspFNI CGCG 1 cut(s) 468
BspLI GGNNCC 1 cut(s) 596
BspPI GGATC 1 cut(s) 614
BspQI GCTCTTC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 367
BsrI ACTGG 4 cut(s) 10, 625, 637, 789
BssECI CCNNGG 1 cut(s) 641
BssMI GATC 3 cut(s) 396, 619, 738
BssNAI GTATAC 1 cut(s) 355
Bst1107I GTATAC 1 cut(s) 355
Bst4CI ACNGT 3 cut(s) 93, 667, 797
Bst6I CTCTTC 2 cut(s) 32, 233
BstDEI CTNAG 3 cut(s) 282, 305, 647
BstDSI CCRYGG 1 cut(s) 641
BstEII GGTNACC 1 cut(s) 242
BstENI CCTNNNNNAGG 1 cut(s) 236
BstFNI CGCG 1 cut(s) 468
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 3 cut(s) 399, 622, 741
BstMAI GTCTC 4 cut(s) 278, 292, 504, 573
BstMBI GATC 3 cut(s) 396, 619, 738
BstMWI GCNNNNNNNGC 9 cut(s) 113, 122, 128, 131, 137, 140, 143, 146, 854
BstNSI RCATGY 1 cut(s) 107
BstPI GGTNACC 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 727
BstUI CGCG 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 396
BstXI CCANNNNNNTGG 1 cut(s) 632
BstYI RGATCY 1 cut(s) 396
BstZ17I GTATAC 1 cut(s) 355
Bsu15I ATCGAT 1 cut(s) 838
BsuRI GGCC 1 cut(s) 24
BsuTUI ATCGAT 1 cut(s) 838
BtgI CCRYGG 1 cut(s) 641
CfoI GCGC 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 594
ClaI ATCGAT 1 cut(s) 838
Csp6I GTAC 2 cut(s) 403, 604
CviAII CATG 3 cut(s) 104, 165, 608
CviQI GTAC 2 cut(s) 403, 604
DdeI CTNAG 3 cut(s) 282, 305, 647
DpnI GATC 3 cut(s) 398, 621, 740
DpnII GATC 3 cut(s) 396, 619, 738
Eam1104I CTCTTC 2 cut(s) 32, 233
EarI CTCTTC 2 cut(s) 32, 233
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 594
Eco91I GGTNACC 1 cut(s) 242
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoO65I GGTNACC 1 cut(s) 242
EcoRV GATATC 1 cut(s) 532
FaeI CATG 3 cut(s) 107, 168, 611
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 3 cut(s) 24, 580, 711
FatI CATG 3 cut(s) 103, 164, 607
FblI GTMKAC 1 cut(s) 354
FspBI CTAG 1 cut(s) 51
GlaI GCGC 1 cut(s) 367
GsuI CTGGAG 2 cut(s) 82, 714
HaeIII GGCC 1 cut(s) 24
HapII CCGG 4 cut(s) 113, 683, 729, 829
HhaI GCGC 1 cut(s) 368
Hin1II CATG 3 cut(s) 107, 168, 611
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HincII GTYRAC 3 cut(s) 161, 337, 630
HindII GTYRAC 3 cut(s) 161, 337, 630
HinfI GANTC 6 cut(s) 470, 497, 550, 555, 806, 832
HpaII CCGG 4 cut(s) 113, 683, 729, 829
HphI GGTGA 1 cut(s) 201
Hpy166II GTNNAC 4 cut(s) 161, 337, 355, 630
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 6 cut(s) 99, 236, 474, 494, 683, 754
Hpy8I GTNNAC 4 cut(s) 161, 337, 355, 630
Hpy99I CGWCG 2 cut(s) 179, 819
HpyAV CCTTC 2 cut(s) 210, 242
HpyCH4III ACNGT 3 cut(s) 93, 667, 797
HpyCH4V TGCA 3 cut(s) 360, 520, 721
HpyF10VI GCNNNNNNNGC 9 cut(s) 113, 122, 128, 131, 137, 140, 143, 146, 854
HpyF3I CTNAG 3 cut(s) 282, 305, 647
Hsp92II CATG 3 cut(s) 107, 168, 611
HspAI GCGC 1 cut(s) 366
Kpn2I TCCGGA 1 cut(s) 682
Kzo9I GATC 3 cut(s) 396, 619, 738
LguI GCTCTTC 1 cut(s) 233
LweI GCATC 1 cut(s) 529
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 5 cut(s) 53, 179, 242, 758, 791
MalI GATC 3 cut(s) 398, 621, 740
MboI GATC 3 cut(s) 396, 619, 738
MboII GAAGA 3 cut(s) 19, 220, 757
MflI RGATCY 1 cut(s) 396
MluCI AATT 2 cut(s) 659, 748
MlyI GAGTC 4 cut(s) 479, 506, 544, 841
MmeI TCCRAC 3 cut(s) 275, 366, 546
MroI TCCGGA 1 cut(s) 682
MseI TTAA 2 cut(s) 255, 701
MslI CAYNNNNRTG 1 cut(s) 414
MspI CCGG 4 cut(s) 113, 683, 729, 829
MspR9I CCNGG 1 cut(s) 729
MvnI CGCG 1 cut(s) 468
MwoI GCNNNNNNNGC 9 cut(s) 113, 122, 128, 131, 137, 140, 143, 146, 854
NciI CCSGG 1 cut(s) 729
NdeII GATC 3 cut(s) 396, 619, 738
NlaIII CATG 3 cut(s) 107, 168, 611
NlaIV GGNNCC 1 cut(s) 596
NmuCI GTSAC 2 cut(s) 53, 791
NspI RCATGY 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 233
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PfeI GAWTC 2 cut(s) 555, 806
PleI GAGTC 4 cut(s) 478, 505, 544, 840
PpsI GAGTC 4 cut(s) 478, 505, 544, 840
PsiI TTATAA 2 cut(s) 747, 825
PspEI GGTNACC 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 596
PspPI GGNCC 1 cut(s) 594
PsuI RGATCY 1 cut(s) 396
RsaI GTAC 2 cut(s) 404, 605
RsaNI GTAC 2 cut(s) 403, 604
RseI CAYNNNNRTG 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 233
SaqAI TTAA 2 cut(s) 255, 701
Sau3AI GATC 3 cut(s) 396, 619, 738
Sau96I GGNCC 1 cut(s) 594
SchI GAGTC 4 cut(s) 479, 506, 544, 841
ScrFI CCNGG 1 cut(s) 729
SetI ASST 6 cut(s) 214, 331, 564, 653, 694, 783
SfaNI GCATC 1 cut(s) 529
SinI GGWCC 1 cut(s) 594
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 2 cut(s) 659, 748
SsiI CCGC 1 cut(s) 350
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 727
TaaI ACNGT 3 cut(s) 93, 667, 797
TaqI TCGA 4 cut(s) 473, 553, 558, 838
TasI AATT 2 cut(s) 659, 748
TfiI GAWTC 2 cut(s) 555, 806
Tru1I TTAA 2 cut(s) 255, 701
Tru9I TTAA 2 cut(s) 255, 701
TseFI GTSAC 2 cut(s) 53, 791
Tsp45I GTSAC 2 cut(s) 53, 791
TspDTI ATGAA 2 cut(s) 267, 362
VpaK11BI GGWCC 1 cut(s) 594
XagI CCTNNNNNAGG 1 cut(s) 236
XceI RCATGY 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 354
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.