FvH4_6g52941

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000237
Physical Location & Seq
Reverse (-)
38873596 .. 38874678
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52941.t1

Sequence Viewer

Length: 798 bp
ATGGCGCAGAGAGACTACCCAAAACGTTGCAGCAATACCATAGCTGCAGAAACTGTAGCCAACATGGAAGAACTCCTTATCGAAATCTTAGTGCGCGTGCCAGCTCGACCTCTGATTCGCTTCAAATGTAATCCTTTTGAAGTCATTGTAAACCAATATGGCCGCATCCATATTATCCACTCCTGCAATGGCCTCTTCTTGTGTCTACCCTTTGTTGGAAGTAGTACTAGTAGGTCCCCATATATTGTTCTCAATCCCACAACTAACCGGTTCTCGACACTCGCAATTCTCCCATGCCCAGCTGCTCCTATTGGTGATGATCACAATGTAGAAACCCCTACCCGTATCATTGGCCGCTCTTTGGCCTTCGACCCTTCCAAGTCACCTCATTACAAGGCAACCTCATGTCCTGTACGAACAGGGGGGGGGGGGGTCTACTGCAACGACGCAATTCACTGGGTAGGTGACGGTTGTGAGATGACATATGATCTCATTGATGAAGAGGTTGTGAAGTTTGTGAGTCCCAACCACTGTAACATGAAGAATTTTCAAGAAAGGAAGTACAGATACTTTCAAGAGAATGGTGGTCATTTGCATCTCATTGATATTTATAACCCCTGTCTTACTAAATTCGAAGTGTTGGAGATGGGAAGAGACTATTCTGGCTGGTTCGTCAAGTACAATGTTGATCTTGATCCTTTGTGCACTGGTTTCTCGAACTTACCTTACGGAAGATTTGTTGTTCTCTTTCTTGATCGAGACGAAAACGAAGAATCTATGTTGCTATACTCCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

266

Amino Acids

30.18

Weight (kDa)

5.9

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 612
AccBSI CCGCTC 1 cut(s) 357
AccI GTMKAC 2 cut(s) 205, 435
AccII CGCG 1 cut(s) 96
AciI CCGC 2 cut(s) 163, 355
AclI AACGTT 1 cut(s) 25
AclWI GGATC 1 cut(s) 689
AcoI YGGCCR 2 cut(s) 160, 352
AcsI RAATTY 2 cut(s) 544, 629
AfaI GTAC 4 cut(s) 226, 414, 563, 680
AfiI CCNNNNNNNGG 2 cut(s) 215, 361
AgeI ACCGGT 1 cut(s) 267
AgsI TTSAA 4 cut(s) 124, 140, 551, 575
AhlI ACTAGT 1 cut(s) 227
AjnI CCWGG 1 cut(s) 791
AluBI AGCT 3 cut(s) 44, 104, 302
AluI AGCT 3 cut(s) 44, 104, 302
Alw21I GWGCWC 1 cut(s) 707
Alw26I GTCTC 3 cut(s) 6, 648, 753
Alw44I GTGCAC 1 cut(s) 703
AlwI GGATC 1 cut(s) 689
AlwNI CAGNNNCTG 1 cut(s) 53
AoxI GGCC 4 cut(s) 160, 190, 352, 363
ApaLI GTGCAC 1 cut(s) 703
ApeKI GCWGC 3 cut(s) 30, 44, 302
ApoI RAATTY 2 cut(s) 544, 629
ArsI GACNNNNNNTTYG 2 cut(s) 99, 131
AsiGI ACCGGT 1 cut(s) 267
AspLEI GCGC 2 cut(s) 7, 96
AspS9I GGNCC 1 cut(s) 234
AsuHPI GGTGA 3 cut(s) 326, 375, 476
AsuII TTCGAA 1 cut(s) 633
AvaII GGWCC 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 707
BarI GAAGNNNNNNTAC 2 cut(s) 551, 583
Bbv12I GWGCWC 1 cut(s) 707
BbvI GCAGC 3 cut(s) 31, 42, 289
BccI CCATC 1 cut(s) 640
BciT130I CCWGG 1 cut(s) 793
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 3 cut(s) 6, 648, 753
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 2 cut(s) 45, 54
BisI GCNGC 5 cut(s) 31, 45, 163, 303, 355
BlsI GCNGC 5 cut(s) 32, 46, 164, 304, 356
BmcAI AGTACT 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 793
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 793
BmrI ACTGGG 1 cut(s) 466
BmsI GCATC 2 cut(s) 174, 604
BmuI ACTGGG 1 cut(s) 466
Bpu14I TTCGAA 1 cut(s) 633
BsaBI GATNNNNATC 1 cut(s) 693
BsaWI WCCGGW 1 cut(s) 267
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 361
Bse118I RCCGGY 1 cut(s) 267
Bse1I ACTGG 2 cut(s) 461, 712
Bse3DI GCAATG 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 1 cut(s) 793
BseGI GGATG 1 cut(s) 165
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 2 cut(s) 215, 361
BseMI GCAATG 1 cut(s) 193
BseNI ACTGG 2 cut(s) 461, 712
BseSI GKGCMC 1 cut(s) 707
BseXI GCAGC 3 cut(s) 31, 42, 289
BseYI CCCAGC 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 4 cut(s) 162, 192, 354, 365
BshTI ACCGGT 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 707
BsiSI CCGG 1 cut(s) 268
BslFI GGGAC 2 cut(s) 220, 507
BslI CCNNNNNNNGG 2 cut(s) 215, 361
BsmAI GTCTC 3 cut(s) 6, 648, 753
BsmBI CGTCTC 1 cut(s) 753
BsmFI GGGAC 2 cut(s) 220, 507
BsnI GGCC 4 cut(s) 162, 192, 354, 365
Bsp119I TTCGAA 1 cut(s) 633
Bsp1286I GDGCHC 1 cut(s) 707
Bsp143I GATC 5 cut(s) 319, 487, 688, 694, 754
BspACI CCGC 2 cut(s) 163, 355
BspANI GGCC 4 cut(s) 162, 192, 354, 365
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 236
BspMAI CTGCAG 1 cut(s) 49
BspPI GGATC 1 cut(s) 689
BspT104I TTCGAA 1 cut(s) 633
BsrBI CCGCTC 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 193
BsrFI RCCGGY 1 cut(s) 267
BsrI ACTGG 2 cut(s) 461, 712
BssAI RCCGGY 1 cut(s) 267
BssMI GATC 5 cut(s) 319, 487, 688, 694, 754
Bst2UI CCWGG 1 cut(s) 793
Bst4CI ACNGT 3 cut(s) 55, 470, 533
Bst6I CTCTTC 3 cut(s) 200, 495, 646
BstBI TTCGAA 1 cut(s) 633
BstC8I GCNNGC 2 cut(s) 98, 102
BstDEI CTNAG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 165
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 2 cut(s) 7, 96
BstKTI GATC 5 cut(s) 322, 490, 691, 697, 757
BstMAI GTCTC 3 cut(s) 6, 648, 753
BstMBI GATC 5 cut(s) 319, 487, 688, 694, 754
BstNI CCWGG 1 cut(s) 793
BstSCI CCNGG 1 cut(s) 791
BstSFI CTRYAG 2 cut(s) 45, 54
BstSLI GKGCMC 1 cut(s) 707
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 3 cut(s) 31, 42, 289
BsuRI GGCC 4 cut(s) 162, 192, 354, 365
BtsCI GGATG 1 cut(s) 165
BtsIMutI CAGTG 3 cut(s) 454, 529, 705
Cac8I GCNNGC 2 cut(s) 98, 102
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 2 cut(s) 7, 96
Cfr10I RCCGGY 1 cut(s) 267
Cfr13I GGNCC 1 cut(s) 234
CseI GACGC 1 cut(s) 455
Csp6I GTAC 4 cut(s) 225, 413, 562, 679
CspAI ACCGGT 1 cut(s) 267
CviAII CATG 4 cut(s) 64, 294, 405, 538
CviJI RGCY 9 cut(s) 44, 59, 104, 162, 192, 302, 354, 365, 666
CviKI_1 RGCY 9 cut(s) 44, 59, 104, 162, 192, 302, 354, 365, 666
CviQI GTAC 4 cut(s) 225, 413, 562, 679
DdeI CTNAG 1 cut(s) 88
DpnI GATC 5 cut(s) 321, 489, 690, 696, 756
DpnII GATC 5 cut(s) 319, 487, 688, 694, 754
EaeI YGGCCR 2 cut(s) 160, 352
Eam1104I CTCTTC 3 cut(s) 200, 495, 646
EarI CTCTTC 3 cut(s) 200, 495, 646
Eco47I GGWCC 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 791
Esp3I CGTCTC 1 cut(s) 753
FaeI CATG 4 cut(s) 67, 297, 408, 541
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FaqI GGGAC 2 cut(s) 220, 507
FatI CATG 4 cut(s) 63, 293, 404, 537
FauNDI CATATG 1 cut(s) 484
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 2 cut(s) 205, 435
Fnu4HI GCNGC 5 cut(s) 31, 45, 163, 303, 355
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 5 cut(s) 31, 45, 163, 303, 355
FspBI CTAG 1 cut(s) 228
GlaI GCGC 2 cut(s) 6, 95
GluI GCNGC 5 cut(s) 31, 45, 163, 303, 355
GsaI CCCAGC 1 cut(s) 302
HaeIII GGCC 4 cut(s) 162, 192, 354, 365
HapII CCGG 1 cut(s) 268
HgaI GACGC 1 cut(s) 455
HhaI GCGC 2 cut(s) 7, 96
Hin1II CATG 4 cut(s) 67, 297, 408, 541
Hin6I GCGC 2 cut(s) 5, 94
HinP1I GCGC 2 cut(s) 5, 94
HinfI GANTC 3 cut(s) 115, 520, 773
HpaII CCGG 1 cut(s) 268
HphI GGTGA 3 cut(s) 326, 375, 476
Hpy166II GTNNAC 4 cut(s) 151, 206, 436, 705
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 7 cut(s) 274, 551, 575, 692, 715, 752, 758
Hpy8I GTNNAC 4 cut(s) 151, 206, 436, 705
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 2 cut(s) 376, 384
HpyCH4III ACNGT 3 cut(s) 55, 470, 533
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 6 cut(s) 30, 47, 186, 441, 595, 705
HpyF3I CTNAG 1 cut(s) 88
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 4 cut(s) 67, 297, 408, 541
HspAI GCGC 2 cut(s) 5, 94
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 5 cut(s) 319, 487, 688, 694, 754
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 3 cut(s) 31, 42, 289
LweI GCATC 2 cut(s) 174, 604
MaeI CTAG 1 cut(s) 228
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 3 cut(s) 381, 464, 533
MalI GATC 5 cut(s) 321, 489, 690, 696, 756
MbiI CCGCTC 1 cut(s) 357
MboI GATC 5 cut(s) 319, 487, 688, 694, 754
MboII GAAGA 7 cut(s) 80, 187, 512, 553, 663, 744, 782
MhlI GDGCHC 1 cut(s) 707
MluCI AATT 4 cut(s) 285, 450, 544, 629
MlyI GAGTC 1 cut(s) 529
MmeI TCCRAC 2 cut(s) 196, 621
MnlI CCTC 5 cut(s) 120, 203, 396, 412, 496
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 1 cut(s) 793
MvaI CCWGG 1 cut(s) 793
MvnI CGCG 1 cut(s) 96
NdeI CATATG 1 cut(s) 484
NdeII GATC 5 cut(s) 319, 487, 688, 694, 754
NlaIII CATG 4 cut(s) 67, 297, 408, 541
NlaIV GGNNCC 1 cut(s) 236
NmuCI GTSAC 2 cut(s) 381, 464
NspV TTCGAA 1 cut(s) 633
PfeI GAWTC 2 cut(s) 115, 773
PinAI ACCGGT 1 cut(s) 267
PkrI GCNGC 5 cut(s) 32, 46, 164, 304, 356
PleI GAGTC 1 cut(s) 528
PpsI GAGTC 1 cut(s) 528
PpuMI RGGWCCY 1 cut(s) 234
PsiI TTATAA 1 cut(s) 612
Psp1406I AACGTT 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 791
PspFI CCCAGC 1 cut(s) 298
PspGI CCWGG 1 cut(s) 791
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 1 cut(s) 234
PspPPI RGGWCCY 1 cut(s) 234
PsrI GAACNNNNNNTAC 2 cut(s) 710, 742
PstI CTGCAG 1 cut(s) 49
PstNI CAGNNNCTG 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 4 cut(s) 226, 414, 563, 680
RsaNI GTAC 4 cut(s) 225, 413, 562, 679
SatI GCNGC 5 cut(s) 31, 45, 163, 303, 355
Sau3AI GATC 5 cut(s) 319, 487, 688, 694, 754
Sau96I GGNCC 1 cut(s) 234
ScaI AGTACT 1 cut(s) 226
SchI GAGTC 1 cut(s) 529
ScrFI CCNGG 1 cut(s) 793
SduI GDGCHC 1 cut(s) 707
SfaNI GCATC 2 cut(s) 174, 604
SfcI CTRYAG 2 cut(s) 45, 54
SfuI TTCGAA 1 cut(s) 633
SinI GGWCC 1 cut(s) 234
SpeI ACTAGT 1 cut(s) 227
Sse9I AATT 4 cut(s) 285, 450, 544, 629
SsiI CCGC 2 cut(s) 163, 355
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 791
TaaI ACNGT 3 cut(s) 55, 470, 533
TaiI ACGT 1 cut(s) 28
TaqI TCGA 7 cut(s) 81, 106, 275, 369, 633, 716, 757
TasI AATT 4 cut(s) 285, 450, 544, 629
TatI WGTACW 3 cut(s) 224, 561, 678
TauI GCSGC 2 cut(s) 165, 357
TfiI GAWTC 2 cut(s) 115, 773
TscAI CASTG 3 cut(s) 461, 536, 712
TseFI GTSAC 2 cut(s) 381, 464
TseI GCWGC 3 cut(s) 30, 44, 302
Tsp45I GTSAC 2 cut(s) 381, 464
TspDTI ATGAA 2 cut(s) 513, 554
TspGWI ACGGA 1 cut(s) 744
TspRI CASTG 3 cut(s) 461, 536, 712
VneI GTGCAC 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 2 cut(s) 544, 629
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XmiI GTMKAC 2 cut(s) 205, 435
XspI CTAG 1 cut(s) 228
ZrmI AGTACT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.