FvH4_6g52862

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000237
Physical Location & Seq
Forward (+)
38835305 .. 38836395
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52862.t1

Sequence Viewer

Length: 873 bp
ATGTGTCTCCCAGCATTCTGTCACCGTCACACCCTTCGAAACCCAAACACTCCCATCTCCGCGGTCTTTCCATACAGATCCACCAAATGTGGTTTCATCCCTATTCCTCTGGATGATCATCTTGAGTTTGGTTCACCCTACAATCCTCTGAATATCTTTCAACACCAATATGACGAGCACATCAAAGTTATCCAGTCCTGCAACGGCCTGTTGTTGTGCAATCTTTTGGATGCAAAAAAACTGAACCCCCCATATATTATTCTCAATCCCACAACCAACCAGTTCTCCGAACTCATTCCTCCTCTGGCCGAACTCATTCCTCCTCTGGCTACTGCTGTTACTAACGATGCTGGTCAACAAGTGGAGGCGCCCTACATCGTCAGCATTGCTTTGGCTTTTGACCCTTCCAAATCACCTCACTACAAGGTTGTCTGCGTACGCACCATTGATGGAACCATGGTCTGCCAGCACTTCCACATTCTCATCTATTCGTCTGAGACTCAAAGTTGGAGGCTTCTTGATTCTTCTTTCTCTATACATGATCGAATCTGTTTAAGTGACGCTGTATTCCTCAATGGAGCAATTCACAGGGTAGGCCTGACTTGTGAGCTTTTGTACTTTCAAGTGGATGAAGAGCGTATCGGTCATGTTTCAAAGGAATCTGGTTCAGATTCTCTTTCTACTCAAGAAGAAAAAGAAGGAGATGAATGTTCAGCTCTGTTGATGCACATACCTGGCAAAGCCTTCTCTTATAATCTTAAGATTAAGACCGCCAAATCTTTTGACTTGGCTCCCATGCCCGGTCTGGATGATAGTCTCTTACGAGTCGGAAGTAACAATCATTGGTATGTAGAAACATTGGCTTGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

291

Amino Acids

32.37

Weight (kDa)

5.66

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 53 - 217 1.3e-10 F-box associated beta propeller domain
FBA_3 PF08268 59 - 223 5.4e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 753
AccB1I GGYRCC 1 cut(s) 367
AccII CGCG 1 cut(s) 62
AciI CCGC 3 cut(s) 60, 62, 771
AclWI GGATC 1 cut(s) 72
AcoI YGGCCR 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 368
AfaI GTAC 2 cut(s) 438, 617
AfiI CCNNNNNNNGG 1 cut(s) 800
AflII CTTAAG 1 cut(s) 758
AgsI TTSAA 3 cut(s) 161, 623, 654
AjnI CCWGG 1 cut(s) 733
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 2 cut(s) 610, 716
AluI AGCT 2 cut(s) 610, 716
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 3 cut(s) 11, 491, 821
AlwI GGATC 1 cut(s) 72
AoxI GGCC 3 cut(s) 205, 306, 595
Asp700I GAANNNNTTC 2 cut(s) 294, 315
AspLEI GCGC 1 cut(s) 370
AsuC2I CCSGG 1 cut(s) 801
AsuHPI GGTGA 3 cut(s) 14, 126, 405
AsuII TTCGAA 1 cut(s) 37
BanI GGYRCC 1 cut(s) 367
Bbv12I GWGCWC 1 cut(s) 180
BccI CCATC 2 cut(s) 62, 443
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 735
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 1 cut(s) 801
BcoDI GTCTC 3 cut(s) 11, 491, 821
BfoI RGCGCY 1 cut(s) 371
BfrI CTTAAG 1 cut(s) 758
Bme1390I CCNGG 2 cut(s) 735, 801
BmiI GGNNCC 3 cut(s) 369, 454, 792
BmrFI CCNGG 2 cut(s) 735, 801
BmsI GCATC 3 cut(s) 220, 337, 714
Bpu14I TTCGAA 1 cut(s) 37
BpuEI CTTGAG 2 cut(s) 143, 669
BpuMI CCSGG 1 cut(s) 801
BsaBI GATNNNNATC 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 60, 456
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 800
Bse1I ACTGG 2 cut(s) 193, 280
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 1 cut(s) 735
BseDI CCNNGG 2 cut(s) 60, 456
BseGI GGATG 5 cut(s) 96, 118, 235, 634, 814
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 800
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 2 cut(s) 193, 280
BseRI GAGGAG 2 cut(s) 291, 312
BseYI CCCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 3 cut(s) 207, 308, 597
BshNI GGYRCC 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 801
BsiWI CGTACG 1 cut(s) 436
BslI CCNNNNNNNGG 1 cut(s) 800
BsmAI GTCTC 3 cut(s) 11, 491, 821
BsmI GAATGC 1 cut(s) 14
BsnI GGCC 3 cut(s) 207, 308, 597
Bsp119I TTCGAA 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 3 cut(s) 77, 115, 541
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 3 cut(s) 60, 62, 771
BspANI GGCC 3 cut(s) 207, 308, 597
BspCNI CTCAG 1 cut(s) 487
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 3 cut(s) 369, 454, 792
BspPI GGATC 1 cut(s) 72
BspQI GCTCTTC 1 cut(s) 627
BspT104I TTCGAA 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 367
BspTI CTTAAG 1 cut(s) 758
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 2 cut(s) 193, 280
BssECI CCNNGG 2 cut(s) 60, 456
BssMI GATC 3 cut(s) 77, 115, 541
BssNI GRCGYC 1 cut(s) 368
BssT1I CCWWGG 1 cut(s) 456
Bst2UI CCWGG 1 cut(s) 735
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 627
BstACI GRCGYC 1 cut(s) 368
BstAFI CTTAAG 1 cut(s) 758
BstBI TTCGAA 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 467
BstDEI CTNAG 1 cut(s) 495
BstDSI CCRYGG 2 cut(s) 60, 456
BstF5I GGATG 5 cut(s) 96, 118, 235, 634, 814
BstFNI CGCG 1 cut(s) 62
BstH2I RGCGCY 1 cut(s) 371
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 3 cut(s) 80, 118, 544
BstMAI GTCTC 3 cut(s) 11, 491, 821
BstMBI GATC 3 cut(s) 77, 115, 541
BstNI CCWGG 1 cut(s) 735
BstSCI CCNGG 2 cut(s) 733, 799
BstUI CGCG 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BsuRI GGCC 3 cut(s) 207, 308, 597
BtgI CCRYGG 2 cut(s) 60, 456
BtsCI GGATG 5 cut(s) 96, 118, 235, 634, 814
Cac8I GCNNGC 1 cut(s) 467
CfoI GCGC 1 cut(s) 370
Cfr42I CCGCGG 1 cut(s) 63
CseI GACGC 1 cut(s) 569
Csp6I GTAC 2 cut(s) 437, 616
CviAII CATG 4 cut(s) 457, 539, 647, 796
CviQI GTAC 2 cut(s) 437, 616
DdeI CTNAG 1 cut(s) 495
DinI GGCGCC 1 cut(s) 369
DpnI GATC 3 cut(s) 79, 117, 543
DpnII GATC 3 cut(s) 77, 115, 541
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco130I CCWWGG 1 cut(s) 456
Eco147I AGGCCT 1 cut(s) 597
EcoRII CCWGG 1 cut(s) 733
EcoT14I CCWWGG 1 cut(s) 456
EgeI GGCGCC 1 cut(s) 369
EheI GGCGCC 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 4 cut(s) 460, 542, 650, 799
FatI CATG 4 cut(s) 456, 538, 646, 795
FbaI TGATCA 1 cut(s) 115
FokI GGATG 5 cut(s) 83, 125, 242, 641, 821
GlaI GCGC 1 cut(s) 369
GsaI CCCAGC 1 cut(s) 14
HaeII RGCGCY 1 cut(s) 371
HaeIII GGCC 3 cut(s) 207, 308, 597
HapII CCGG 1 cut(s) 801
HgaI GACGC 1 cut(s) 569
HhaI GCGC 1 cut(s) 370
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 4 cut(s) 460, 542, 650, 799
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HincII GTYRAC 1 cut(s) 356
HindII GTYRAC 1 cut(s) 356
HinfI GANTC 6 cut(s) 499, 521, 546, 659, 671, 825
HpaII CCGG 1 cut(s) 801
HphI GGTGA 3 cut(s) 14, 126, 405
Hpy166II GTNNAC 2 cut(s) 134, 356
Hpy188I TCNGA 5 cut(s) 150, 289, 496, 670, 830
Hpy188III TCNNGA 5 cut(s) 110, 122, 518, 686, 806
Hpy8I GTNNAC 2 cut(s) 134, 356
HpyAV CCTTC 4 cut(s) 44, 414, 692, 754
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 4 cut(s) 201, 219, 233, 727
HpyF3I CTNAG 1 cut(s) 495
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 4 cut(s) 460, 542, 650, 799
HspAI GCGC 1 cut(s) 368
KasI GGCGCC 1 cut(s) 367
Ksp22I TGATCA 1 cut(s) 115
KspI CCGCGG 1 cut(s) 63
Kzo9I GATC 3 cut(s) 77, 115, 541
LguI GCTCTTC 1 cut(s) 627
LmnI GCTCC 2 cut(s) 578, 796
LweI GCATC 3 cut(s) 220, 337, 714
MaeIII GTNAC 5 cut(s) 20, 26, 337, 557, 833
MalI GATC 3 cut(s) 79, 117, 543
MboI GATC 3 cut(s) 77, 115, 541
MboII GAAGA 3 cut(s) 516, 644, 701
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 582
Mly113I GGCGCC 1 cut(s) 368
MlyI GAGTC 2 cut(s) 493, 834
MmeI TCCRAC 2 cut(s) 488, 808
MroXI GAANNNNTTC 2 cut(s) 294, 315
MseI TTAA 3 cut(s) 554, 759, 765
MslI CAYNNNNRTG 2 cut(s) 168, 846
MspA1I CMGCKG 1 cut(s) 62
MspCI CTTAAG 1 cut(s) 758
MspI CCGG 1 cut(s) 801
MspR9I CCNGG 2 cut(s) 735, 801
Mva1269I GAATGC 1 cut(s) 14
MvaI CCWGG 1 cut(s) 735
MvnI CGCG 1 cut(s) 62
NarI GGCGCC 1 cut(s) 368
NciI CCSGG 1 cut(s) 801
NcoI CCATGG 1 cut(s) 456
NdeII GATC 3 cut(s) 77, 115, 541
NlaIII CATG 4 cut(s) 460, 542, 650, 799
NlaIV GGNNCC 3 cut(s) 369, 454, 792
NmuCI GTSAC 3 cut(s) 20, 26, 557
NspV TTCGAA 1 cut(s) 37
PceI AGGCCT 1 cut(s) 597
PciSI GCTCTTC 1 cut(s) 627
PctI GAATGC 1 cut(s) 14
PdmI GAANNNNTTC 2 cut(s) 294, 315
PfeI GAWTC 4 cut(s) 521, 546, 659, 671
Pfl23II CGTACG 1 cut(s) 436
PleI GAGTC 2 cut(s) 493, 833
PluTI GGCGCC 1 cut(s) 371
PpsI GAGTC 2 cut(s) 493, 833
PsiI TTATAA 1 cut(s) 753
Psp6I CCWGG 1 cut(s) 733
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 1 cut(s) 733
PspLI CGTACG 1 cut(s) 436
PspN4I GGNNCC 3 cut(s) 369, 454, 792
PsuI RGATCY 1 cut(s) 77
RsaI GTAC 2 cut(s) 438, 617
RsaNI GTAC 2 cut(s) 437, 616
RseI CAYNNNNRTG 2 cut(s) 168, 846
SacII CCGCGG 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 627
SaqAI TTAA 3 cut(s) 554, 759, 765
Sau3AI GATC 3 cut(s) 77, 115, 541
SchI GAGTC 2 cut(s) 493, 834
ScrFI CCNGG 2 cut(s) 735, 801
SduI GDGCHC 1 cut(s) 180
SetI ASST 5 cut(s) 418, 429, 612, 718, 736
SfaNI GCATC 3 cut(s) 220, 337, 714
SfoI GGCGCC 1 cut(s) 369
Sfr303I CCGCGG 1 cut(s) 63
SfuI TTCGAA 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 63
SmiMI CAYNNNNRTG 2 cut(s) 168, 846
SmlI CTYRAG 3 cut(s) 122, 684, 758
SmoI CTYRAG 3 cut(s) 122, 684, 758
Sse9I AATT 1 cut(s) 582
SseBI AGGCCT 1 cut(s) 597
SsiI CCGC 3 cut(s) 60, 62, 771
SspDI GGCGCC 1 cut(s) 367
StuI AGGCCT 1 cut(s) 597
StyD4I CCNGG 2 cut(s) 733, 799
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 37, 544
TaqII GACCGA 1 cut(s) 632
TasI AATT 1 cut(s) 582
TatI WGTACW 1 cut(s) 615
TfiI GAWTC 4 cut(s) 521, 546, 659, 671
Tru1I TTAA 3 cut(s) 554, 759, 765
Tru9I TTAA 3 cut(s) 554, 759, 765
TseFI GTSAC 3 cut(s) 20, 26, 557
Tsp45I GTSAC 3 cut(s) 20, 26, 557
TspDTI ATGAA 3 cut(s) 85, 645, 720
Vha464I CTTAAG 1 cut(s) 758
XcmI CCANNNNNNNNNTGG 1 cut(s) 802
XmnI GAANNNNTTC 2 cut(s) 294, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.