Rh2DG683300

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000237
Physical Location & Seq
Forward (+)
90237687 .. 90242471
4785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG683300.1

Sequence Viewer

Length: 1041 bp
ATGGCGCAGAGATTCTACCCCAAACGCTGCACCAGTAGCACAGCAGAAACCGTAGCCAACACCGAAGAACTCCTTACCCAAATCCTTGTGCGTGTGCCTGCTAGACCTCTGGTCCGATTCAAATGTGTCTCCAAACACTGGCTCTCTCTTATATCCGACCCCAGATTCTGTCACCGCCACACCCTTCAAAACCCAAACACTCCCATCTCCGCCGTCTTCTGTGACACATCCCAACAGCCCTTTCGTTTCATCCCTCTTGATGATCTTGATCGCATGCGTGGAGCTTGTAGGACTAACCATGAAAACCAAAACCCATCTGGCTCTGCTTCACCTACTTGTAATCCTCTCGATTATGATTACGATACCAAAACTGGCCAGACCTTTCCCGTTGACCCTCTTCCTCTTTGTTGTAACAAAAGCCCATCTCGGTCTGGTTCAACCTCATTCAATCCTCTTAACTTTGCTCAAAACCAATATGATGATGACATCAGAATTATCCAGTCCTGCAATGGCCTCTTCCTGTGTCGTCTTTTTCGTTCTGAAAATGTAAACCCCCCATATTTTATTCTCAATCCTACAACCAATCAGTTCCACACACTTATTCCTCCTCCAGCTACTCTTGTTACCACCGCTACCGGTGAACAAGTAGAACCCTATATCATCTCTACTGCTTTGGCATTTGACCCCTCCAAATCACCTCATTACAAGGTGGTCTGTCTTCGGACCATTGATGGATCCAAAGACGGGGCAATCTTTCACGTAGTGATATATTCATCTGAGACTCAAAGTTGGAGGCTTCTTGATTCTTTTATTGAGAGGTTCTCTACACTTATTCCTCCTCCAGCTACTGCTGTTACCACCGCTACTGGTGAACGAGTAGAACCCTATGTCATCTCTATTGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGTGATCTGCATATTCTTTGGTGTTCTTTTGATGGTTCTATCACCAATTGGAGGGCTGAGATCAATCATAGTTCAAGCCAAGACCTACGAGTTCTACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

346

Amino Acids

38.75

Weight (kDa)

7.95

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 58 1.4e-06 F-box domain
FBA_1 PF07734 155 - 269 2.9e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 138
AciI CCGC 4 cut(s) 175, 210, 630, 861
AclWI GGATC 2 cut(s) 729, 742
AcoI YGGCCR 1 cut(s) 373
AdeI CACNNNGTG 1 cut(s) 763
AfiI CCNNNNNNNGG 3 cut(s) 138, 744, 989
AgeI ACCGGT 1 cut(s) 635
AgsI TTSAA 5 cut(s) 121, 188, 438, 448, 1013
AhdI GACNNNNNGTC 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 3 cut(s) 284, 614, 845
AluI AGCT 3 cut(s) 284, 614, 845
Alw26I GTCTC 2 cut(s) 133, 773
AlwI GGATC 2 cut(s) 729, 742
AlwNI CAGNNNCTG 2 cut(s) 168, 848
AoxI GGCC 2 cut(s) 373, 511
ApeKI GCWGC 1 cut(s) 27
AsiGI ACCGGT 1 cut(s) 635
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 112, 723
AsuHPI GGTGA 8 cut(s) 164, 321, 650, 687, 881, 918, 952, 972
AvaII GGWCC 2 cut(s) 112, 723
BalI TGGCCA 1 cut(s) 375
BamHI GGATCC 1 cut(s) 734
BbsI GAAGAC 2 cut(s) 208, 710
BbvI GCAGC 1 cut(s) 14
BccI CCATC 5 cut(s) 212, 322, 430, 725, 964
BceAI ACGGC 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 133, 773
BfaI CTAG 1 cut(s) 102
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme18I GGWCC 2 cut(s) 112, 723
BmeRI GACNNNNNGTC 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 112, 723
BmiI GGNNCC 1 cut(s) 736
BpiI GAAGAC 2 cut(s) 208, 710
BplI GAGNNNNNCTC 3 cut(s) 806, 838, 1019
BpmI CTGGAG 2 cut(s) 594, 825
BsaAI YACGTR 1 cut(s) 760
BsaBI GATNNNNATC 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 635
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 744, 989
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 5 cut(s) 33, 143, 376, 499, 871
Bse3DI GCAATG 1 cut(s) 514
Bse8I GATNNNNATC 1 cut(s) 267
BseGI GGATG 2 cut(s) 227, 249
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 3 cut(s) 138, 744, 989
BseMI GCAATG 1 cut(s) 514
BseMII CTCAG 2 cut(s) 768, 986
BseNI ACTGG 5 cut(s) 33, 143, 376, 499, 871
BseRI GAGGAG 2 cut(s) 597, 828
BseXI GCAGC 1 cut(s) 14
BsgI GTGCAG 1 cut(s) 13
BshFI GGCC 2 cut(s) 375, 513
BshTI ACCGGT 1 cut(s) 635
BsiSI CCGG 1 cut(s) 636
BslI CCNNNNNNNGG 3 cut(s) 138, 744, 989
BsmAI GTCTC 2 cut(s) 133, 773
BsnI GGCC 2 cut(s) 375, 513
Bsp143I GATC 5 cut(s) 262, 268, 734, 942, 998
BspACI CCGC 4 cut(s) 175, 210, 630, 861
BspANI GGCC 2 cut(s) 375, 513
BspCNI CTCAG 2 cut(s) 769, 987
BspLI GGNNCC 1 cut(s) 736
BspPI GGATC 2 cut(s) 729, 742
BsrDI GCAATG 1 cut(s) 514
BsrFI RCCGGY 1 cut(s) 635
BsrI ACTGG 5 cut(s) 33, 143, 376, 499, 871
BssAI RCCGGY 1 cut(s) 635
BssMI GATC 5 cut(s) 262, 268, 734, 942, 998
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 2 cut(s) 402, 521
BstBAI YACGTR 1 cut(s) 760
BstC8I GCNNGC 2 cut(s) 99, 275
BstDEI CTNAG 2 cut(s) 777, 995
BstF5I GGATG 2 cut(s) 227, 249
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 265, 271, 737, 945, 1001
BstMAI GTCTC 2 cut(s) 133, 773
BstMBI GATC 5 cut(s) 262, 268, 734, 942, 998
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 14
BstV2I GAAGAC 2 cut(s) 208, 710
BstX2I RGATCY 1 cut(s) 734
BstYI RGATCY 1 cut(s) 734
BsuRI GGCC 2 cut(s) 375, 513
BtsCI GGATG 2 cut(s) 227, 249
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 99, 275
CaiI CAGNNNCTG 2 cut(s) 168, 848
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 2 cut(s) 112, 723
CspAI ACCGGT 1 cut(s) 635
CviAII CATG 2 cut(s) 274, 299
DdeI CTNAG 2 cut(s) 777, 995
DpnI GATC 5 cut(s) 264, 270, 736, 944, 1000
DpnII GATC 5 cut(s) 262, 268, 734, 942, 998
DraIII CACNNNGTG 1 cut(s) 763
DriI GACNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 373
Eam1104I CTCTTC 2 cut(s) 402, 521
Eam1105I GACNNNNNGTC 1 cut(s) 110
EarI CTCTTC 2 cut(s) 402, 521
EciI GGCGGA 1 cut(s) 199
Eco47I GGWCC 2 cut(s) 112, 723
FaeI CATG 2 cut(s) 277, 302
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FatI CATG 2 cut(s) 273, 298
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 2 cut(s) 214, 236
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 28
GsuI CTGGAG 2 cut(s) 594, 825
HaeIII GGCC 2 cut(s) 375, 513
HapII CCGG 1 cut(s) 636
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 277, 302
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 5 cut(s) 12, 117, 165, 781, 803
HpaII CCGG 1 cut(s) 636
HphI GGTGA 8 cut(s) 164, 321, 650, 687, 881, 918, 952, 972
Hpy166II GTNNAC 4 cut(s) 391, 550, 641, 872
Hpy188I TCNGA 6 cut(s) 116, 157, 491, 541, 723, 778
Hpy188III TCNNGA 4 cut(s) 257, 266, 347, 800
Hpy8I GTNNAC 4 cut(s) 391, 550, 641, 872
HpyAV CCTTC 2 cut(s) 194, 927
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 1 cut(s) 759
HpyCH4V TGCA 3 cut(s) 30, 507, 948
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 2 cut(s) 777, 995
HpySE526I ACGT 1 cut(s) 759
Hsp92II CATG 2 cut(s) 277, 302
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 5 cut(s) 262, 268, 734, 942, 998
LmnI GCTCC 1 cut(s) 281
Lsp1109I GCAGC 1 cut(s) 14
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 759
MaeIII GTNAC 5 cut(s) 170, 221, 410, 622, 853
MalI GATC 5 cut(s) 264, 270, 736, 944, 1000
MboI GATC 5 cut(s) 262, 268, 734, 942, 998
MboII GAAGA 5 cut(s) 77, 208, 389, 508, 710
MfeI CAATTG 1 cut(s) 984
MflI RGATCY 1 cut(s) 734
MlsI TGGCCA 1 cut(s) 375
MluCI AATT 2 cut(s) 492, 984
MluNI TGGCCA 1 cut(s) 375
MlyI GAGTC 1 cut(s) 775
MmeI TCCRAC 2 cut(s) 180, 770
Mox20I TGGCCA 1 cut(s) 375
MscI TGGCCA 1 cut(s) 375
MseI TTAA 2 cut(s) 456, 1039
Msp20I TGGCCA 1 cut(s) 375
MspI CCGG 1 cut(s) 636
MunI CAATTG 1 cut(s) 984
MwoI GCNNNNNNNGC 1 cut(s) 36
NdeII GATC 5 cut(s) 262, 268, 734, 942, 998
NlaIII CATG 2 cut(s) 277, 302
NlaIV GGNNCC 1 cut(s) 736
NmuCI GTSAC 2 cut(s) 170, 221
NspI RCATGY 1 cut(s) 277
PaeI GCATGC 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 532
PfeI GAWTC 4 cut(s) 12, 117, 165, 803
PflMI CCANNNNNTGG 1 cut(s) 138
PinAI ACCGGT 1 cut(s) 635
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 1 cut(s) 775
PpsI GAGTC 1 cut(s) 775
Ppu21I YACGTR 1 cut(s) 760
PspN4I GGNNCC 1 cut(s) 736
PspPI GGNCC 2 cut(s) 112, 723
PstNI CAGNNNCTG 2 cut(s) 168, 848
PsuI RGATCY 1 cut(s) 734
SaqAI TTAA 2 cut(s) 456, 1039
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 5 cut(s) 262, 268, 734, 942, 998
Sau96I GGNCC 2 cut(s) 112, 723
SchI GAGTC 1 cut(s) 775
SinI GGWCC 2 cut(s) 112, 723
SphI GCATGC 1 cut(s) 277
Sse9I AATT 2 cut(s) 492, 984
SsiI CCGC 4 cut(s) 175, 210, 630, 861
SspMI CTAG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 1 cut(s) 762
TaqI TCGA 1 cut(s) 348
TaqII GACCGA 1 cut(s) 417
TasI AATT 2 cut(s) 492, 984
TfiI GAWTC 4 cut(s) 12, 117, 165, 803
Tru1I TTAA 2 cut(s) 456, 1039
Tru9I TTAA 2 cut(s) 456, 1039
TscAI CASTG 1 cut(s) 143
TseFI GTSAC 2 cut(s) 170, 221
TseI GCWGC 1 cut(s) 27
Tsp45I GTSAC 2 cut(s) 170, 221
TspDTI ATGAA 3 cut(s) 238, 315, 762
TspRI CASTG 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 138
VpaK11BI GGWCC 2 cut(s) 112, 723
XceI RCATGY 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 2 cut(s) 314, 506
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.