Rw2G054080

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000237
Physical Location & Seq
Forward (+)
81782792 .. 81783543
752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G054080.1

Sequence Viewer

Length: 630 bp
ATGGAGCAGAGACTTGACCTAAAACGCTGCAGCTACAGCAGCAGCTTACCACAAACCATAGCCAACACGGAAGATATCCTTACAGAAATCCAAGTGCGTTTGCCTGCTCGACCTCTGGTTCGATTCAAATGCGTCTCCAAGCATTGGCTCTCTCTTATCTCTGACCCTAACTTCTGTCATCGCCACACCCTTAGGAACCCCCACTCCTCCATCTCCGCCGTCTTGACTAAATCATCCACTGGCTTTAGTACTAGTAACCACGGAAACCAAAAGCTATCTGGGTCTGCAGGGTCTGGTAAACCCACCTGCAATCCTCTTAACTTCGTTCCAACCCTATATGACACCGTGATTATCCAGTCCTGCAATGGCCTTTTCTTGTGCTGTCCCAATCCTCCAATAATTAACCGTCCATATTATGTTGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTGCAAGGTGGTATTGCTTTGGAGCGTTAATGAACCAGAAGATGACTATTGCCCTTATTTTCACATAGAGATATATTCTTTTGAGACTCAAAGTTGGAGACTTCTAGATTCCTCTTTCATTAGGGCAGGTAATGTCAGCTATGATGAAGGGGTATACTGCAATGGCGCTGTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

209

Amino Acids

23.46

Weight (kDa)

7.57

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 314
Acc36I ACCTGC 2 cut(s) 314, 569
AccB7I CCANNNNNTGG 1 cut(s) 144
AccI GTMKAC 1 cut(s) 606
AciI CCGC 1 cut(s) 216
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 1 cut(s) 127
AhlI ACTAGT 1 cut(s) 251
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 4 cut(s) 33, 45, 274, 591
AluI AGCT 4 cut(s) 33, 45, 274, 591
Alw26I GTCTC 4 cut(s) 4, 139, 530, 544
AlwNI CAGNNNCTG 1 cut(s) 293
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 4 cut(s) 27, 30, 39, 42
ArsI GACNNNNNNTTYG 2 cut(s) 102, 134
AspLEI GCGC 1 cut(s) 620
AsuHPI GGTGA 1 cut(s) 438
AxyI CCTNAGG 1 cut(s) 191
BbvI GCAGC 4 cut(s) 14, 42, 51, 54
BccI CCATC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 203
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BcoDI GTCTC 4 cut(s) 4, 139, 530, 544
BcuI ACTAGT 1 cut(s) 251
BfaI CTAG 2 cut(s) 252, 557
BfmI CTRYAG 3 cut(s) 28, 34, 285
BfoI RGCGCY 1 cut(s) 621
BfuAI ACCTGC 2 cut(s) 314, 569
BisI GCNGC 4 cut(s) 28, 31, 40, 43
BlsI GCNGC 4 cut(s) 29, 32, 41, 44
BmcAI AGTACT 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 2 cut(s) 244, 355
Bse21I CCTNAGG 1 cut(s) 191
Bse3DI GCAATG 3 cut(s) 370, 451, 619
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 3 cut(s) 370, 451, 619
BseNI ACTGG 2 cut(s) 244, 355
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 4 cut(s) 14, 42, 51, 54
BshFI GGCC 1 cut(s) 369
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 4 cut(s) 4, 139, 530, 544
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 1 cut(s) 369
BspACI CCGC 1 cut(s) 216
BspANI GGCC 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 197
BspMAI CTGCAG 2 cut(s) 32, 289
BspMI ACCTGC 2 cut(s) 314, 569
BsrDI GCAATG 3 cut(s) 370, 451, 619
BsrI ACTGG 2 cut(s) 244, 355
BssECI CCNNGG 1 cut(s) 259
BssNAI GTATAC 1 cut(s) 607
Bst1107I GTATAC 1 cut(s) 607
Bst4CI ACNGT 2 cut(s) 346, 407
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 191
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 233
BstH2I RGCGCY 1 cut(s) 621
BstHHI GCGC 1 cut(s) 620
BstMAI GTCTC 4 cut(s) 4, 139, 530, 544
BstMWI GCNNNNNNNGC 2 cut(s) 36, 39
BstSFI CTRYAG 3 cut(s) 28, 34, 285
BstV1I GCAGC 4 cut(s) 14, 42, 51, 54
BstZ17I GTATAC 1 cut(s) 607
Bsu36I CCTNAGG 1 cut(s) 191
BsuRI GGCC 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 259
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 2 cut(s) 314, 569
Cac8I GCNNGC 1 cut(s) 105
CaiI CAGNNNCTG 1 cut(s) 293
CfoI GCGC 1 cut(s) 620
CseI GACGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 249
CviJI RGCY 9 cut(s) 33, 45, 62, 148, 243, 274, 369, 428, 591
CviKI_1 RGCY 9 cut(s) 33, 45, 62, 148, 243, 274, 369, 428, 591
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 1 cut(s) 191
EciI GGCGGA 1 cut(s) 205
Eco32I GATATC 1 cut(s) 76
Eco81I CCTNAGG 1 cut(s) 191
EcoRV GATATC 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 139
FaiI YATR 9 cut(s) 59, 337, 339, 412, 417, 518, 526, 594, 607
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FaqI GGGAC 1 cut(s) 369
FblI GTMKAC 1 cut(s) 606
Fnu4HI GCNGC 4 cut(s) 28, 31, 40, 43
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 4 cut(s) 28, 31, 40, 43
FspBI CTAG 2 cut(s) 252, 557
GlaI GCGC 1 cut(s) 619
GluI GCNGC 4 cut(s) 28, 31, 40, 43
HaeII RGCGCY 1 cut(s) 621
HaeIII GGCC 1 cut(s) 369
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 620
Hin6I GCGC 1 cut(s) 618
HinP1I GCGC 1 cut(s) 618
HinfI GANTC 3 cut(s) 123, 538, 560
HphI GGTGA 1 cut(s) 438
Hpy166II GTNNAC 2 cut(s) 299, 607
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 2 cut(s) 223, 557
Hpy8I GTNNAC 2 cut(s) 299, 607
HpyAV CCTTC 2 cut(s) 447, 593
HpyCH4III ACNGT 2 cut(s) 346, 407
HpyCH4V TGCA 6 cut(s) 30, 287, 309, 363, 456, 612
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 39
HpyF3I CTNAG 1 cut(s) 191
HspAI GCGC 1 cut(s) 618
LmnI GCTCC 2 cut(s) 4, 474
Lsp1109I GCAGC 4 cut(s) 14, 42, 51, 54
MaeI CTAG 2 cut(s) 252, 557
MaeIII GTNAC 1 cut(s) 254
MboII GAAGA 2 cut(s) 83, 503
MluCI AATT 1 cut(s) 399
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 2 cut(s) 353, 527
MnlI CCTC 6 cut(s) 123, 217, 324, 402, 459, 574
MseI TTAA 3 cut(s) 318, 402, 480
MwoI GCNNNNNNNGC 2 cut(s) 36, 39
NlaIV GGNNCC 1 cut(s) 197
PaqCI CACCTGC 1 cut(s) 314
PfeI GAWTC 2 cut(s) 123, 560
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 4 cut(s) 29, 32, 41, 44
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
PspN4I GGNNCC 1 cut(s) 197
PstI CTGCAG 2 cut(s) 32, 289
PstNI CAGNNNCTG 1 cut(s) 293
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SaqAI TTAA 3 cut(s) 318, 402, 480
SatI GCNGC 4 cut(s) 28, 31, 40, 43
ScaI AGTACT 1 cut(s) 250
SchI GAGTC 1 cut(s) 532
SfcI CTRYAG 3 cut(s) 28, 34, 285
SpeI ACTAGT 1 cut(s) 251
Sse9I AATT 1 cut(s) 399
SsiI CCGC 1 cut(s) 216
SspMI CTAG 2 cut(s) 252, 557
TaaI ACNGT 2 cut(s) 346, 407
TaqI TCGA 2 cut(s) 109, 121
TasI AATT 1 cut(s) 399
TatI WGTACW 1 cut(s) 248
TfiI GAWTC 2 cut(s) 123, 560
Tru1I TTAA 3 cut(s) 318, 402, 480
Tru9I TTAA 3 cut(s) 318, 402, 480
TscAI CASTG 1 cut(s) 244
TseI GCWGC 4 cut(s) 27, 30, 39, 42
TspDTI ATGAA 4 cut(s) 498, 559, 612, 614
TspGWI ACGGA 2 cut(s) 83, 276
TspRI CASTG 1 cut(s) 244
Van91I CCANNNNNTGG 1 cut(s) 144
XbaI TCTAGA 1 cut(s) 556
XcmI CCANNNNNNNNNTGG 2 cut(s) 275, 362
XmiI GTMKAC 1 cut(s) 606
XspI CTAG 2 cut(s) 252, 557
ZrmI AGTACT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.