Rh2AG658400

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000237
Physical Location & Seq
Forward (+)
87449552 .. 87457772
8221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG658400.1

Sequence Viewer

Length: 1014 bp
ATGGCGCAGAGATTCTACCCCAAACGCTGCACCAGTAGCACAGCAGAAACCGTAGCCAACACCGAAGAACTCCTTACCCAAATCCTTGTGCGTGTGCCTGCTAGACCTCTGGTCCGATTCAAATGTGTCTCCAAGCACTGGCTCTCTCTTATATCCGACCCCAGATTCTGTCACCGCCACACCCTTCAAAACCCAAACACCCCCATCTCCGCCGTCTTCTGTGACACATCCCAACAGCCCTTTCGTTTCATCCCTCTTGATGATCTTGATCGCATGCGTGGAGCTTGTAGGACTAACCATGAAAACCAAAACCCATCTGGCTCTGCTTCACCTACTTGTAATCCTCTCGATTATGATTACGATACCAAAACTGGCCAGACCTTTCCCGTTGACCCTCTTCCTCTTTGTTGTAACAAAAGCCCATCTCGGTCTGGTTCAGCCTCATTCAATCCTCTTAACTTTGCTCAAAACCAATATGATGATGACATCAGAATTATCCAGTCCTGCAATGGCCTCTTCCTGTGTCGTCTTTTTCGTTCTGAAAATGTAAACCCCCCATATTTTATTCTCAATCCTACAACCAATCAGTTCCACACACTTATTCCTCCTCCAGCTACTCTTGTTACCACCGCTACCGGTGAACAAGTAGAACCCTATATCATCTCTATTGCTTTGGCATTTGACCCTTCCAAATCACCTCATTACAAGGTGGATTGCCCTGCATCTAAGGACTCTAGGCAACAGCAGCTCCGCAAGTTCGTTTCGTTGTTATGGGGACTTTGCTTTCAGCTGGCTCATCAAGTCATTTTATGGGGGAAGACCTCCAATCCCTTGAGTATGAAAGAGCTTCAGATTTGGAGCAGCAACTTAACTCTGAAGCACATAAGATCTAGAAAGAATCATTTGATCAATTTGGATGAAAAGAAGTTTGGTATCAACCCCTACCAAAAATCGAAAGAGGCATATATAGTGGGAACAAAAAGACCCGCAGCAAAGCGTGGGCTGCCTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

337

Amino Acids

38.24

Weight (kDa)

9.32

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 58 1.3e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 138
AciI CCGC 5 cut(s) 175, 210, 630, 751, 987
AcoI YGGCCR 1 cut(s) 373
AcuI CTGAAG 2 cut(s) 833, 896
AfiI CCNNNNNNNGG 1 cut(s) 138
AgeI ACCGGT 1 cut(s) 635
AgsI TTSAA 3 cut(s) 121, 188, 448
AhdI GACNNNNNGTC 1 cut(s) 110
AjuI GAANNNNNNNTTGG 4 cut(s) 225, 257, 912, 944
AluBI AGCT 5 cut(s) 284, 614, 748, 790, 847
AluI AGCT 5 cut(s) 284, 614, 748, 790, 847
Alw26I GTCTC 1 cut(s) 133
AlwNI CAGNNNCTG 1 cut(s) 168
AoxI GGCC 2 cut(s) 373, 511
ApeKI GCWGC 5 cut(s) 27, 745, 861, 989, 1003
AsiGI ACCGGT 1 cut(s) 635
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 4 cut(s) 164, 321, 650, 687
AvaII GGWCC 1 cut(s) 112
BalI TGGCCA 1 cut(s) 375
BbsI GAAGAC 2 cut(s) 208, 824
BbvI GCAGC 5 cut(s) 14, 757, 873, 990, 1001
BccI CCATC 3 cut(s) 212, 322, 430
BceAI ACGGC 1 cut(s) 197
BclI TGATCA 1 cut(s) 906
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 4 cut(s) 102, 735, 891, 1012
BglII AGATCT 1 cut(s) 887
BisI GCNGC 5 cut(s) 28, 746, 862, 990, 1004
BlsI GCNGC 5 cut(s) 29, 747, 863, 991, 1005
Bme18I GGWCC 1 cut(s) 112
BmeRI GACNNNNNGTC 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 112
BmsI GCATC 1 cut(s) 731
BpiI GAAGAC 2 cut(s) 208, 824
BpmI CTGGAG 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 853
BsaBI GATNNNNATC 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 635
BsaXI ACNNNNNCTCC 2 cut(s) 732, 762
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 4 cut(s) 33, 143, 376, 499
Bse3DI GCAATG 1 cut(s) 514
Bse8I GATNNNNATC 1 cut(s) 267
BseGI GGATG 3 cut(s) 227, 249, 922
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 514
BseNI ACTGG 4 cut(s) 33, 143, 376, 499
BseRI GAGGAG 1 cut(s) 597
BseXI GCAGC 5 cut(s) 14, 757, 873, 990, 1001
BsgI GTGCAG 1 cut(s) 13
BshFI GGCC 2 cut(s) 375, 513
BshTI ACCGGT 1 cut(s) 635
BsiSI CCGG 1 cut(s) 636
BslFI GGGAC 1 cut(s) 789
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 789
BsnI GGCC 2 cut(s) 375, 513
Bsp143I GATC 4 cut(s) 262, 268, 887, 906
BspACI CCGC 5 cut(s) 175, 210, 630, 751, 987
BspANI GGCC 2 cut(s) 375, 513
BsrDI GCAATG 1 cut(s) 514
BsrFI RCCGGY 1 cut(s) 635
BsrI ACTGG 4 cut(s) 33, 143, 376, 499
BssAI RCCGGY 1 cut(s) 635
BssMI GATC 4 cut(s) 262, 268, 887, 906
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 2 cut(s) 402, 521
BstC8I GCNNGC 3 cut(s) 99, 275, 792
BstDEI CTNAG 1 cut(s) 726
BstF5I GGATG 3 cut(s) 227, 249, 922
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 265, 271, 890, 909
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 4 cut(s) 262, 268, 887, 906
BstMWI GCNNNNNNNGC 3 cut(s) 36, 745, 1003
BstNSI RCATGY 1 cut(s) 277
BstV1I GCAGC 5 cut(s) 14, 757, 873, 990, 1001
BstV2I GAAGAC 2 cut(s) 208, 824
BstX2I RGATCY 1 cut(s) 887
BstYI RGATCY 1 cut(s) 887
BsuRI GGCC 2 cut(s) 375, 513
BtsCI GGATG 3 cut(s) 227, 249, 922
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 3 cut(s) 99, 275, 792
CaiI CAGNNNCTG 1 cut(s) 168
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 1 cut(s) 112
CspAI ACCGGT 1 cut(s) 635
CviAII CATG 2 cut(s) 274, 299
DdeI CTNAG 1 cut(s) 726
DpnI GATC 4 cut(s) 264, 270, 889, 908
DpnII GATC 4 cut(s) 262, 268, 887, 906
DriI GACNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 373
Eam1104I CTCTTC 2 cut(s) 402, 521
Eam1105I GACNNNNNGTC 1 cut(s) 110
EarI CTCTTC 2 cut(s) 402, 521
EciI GGCGGA 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 112
Eco57I CTGAAG 2 cut(s) 833, 896
FaeI CATG 2 cut(s) 277, 302
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FaqI GGGAC 1 cut(s) 789
FatI CATG 2 cut(s) 273, 298
FauI CCCGC 1 cut(s) 994
FbaI TGATCA 1 cut(s) 906
Fnu4HI GCNGC 5 cut(s) 28, 746, 862, 990, 1004
FokI GGATG 3 cut(s) 214, 236, 929
Fsp4HI GCNGC 5 cut(s) 28, 746, 862, 990, 1004
FspBI CTAG 4 cut(s) 102, 735, 891, 1012
GlaI GCGC 1 cut(s) 6
GluI GCNGC 5 cut(s) 28, 746, 862, 990, 1004
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 2 cut(s) 375, 513
HapII CCGG 1 cut(s) 636
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 277, 302
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 5 cut(s) 12, 117, 165, 731, 898
HpaII CCGG 1 cut(s) 636
HphI GGTGA 4 cut(s) 164, 321, 650, 687
Hpy166II GTNNAC 3 cut(s) 391, 550, 641
Hpy188I TCNGA 6 cut(s) 116, 157, 491, 541, 852, 876
Hpy188III TCNNGA 4 cut(s) 257, 266, 347, 891
Hpy8I GTNNAC 3 cut(s) 391, 550, 641
HpyAV CCTTC 2 cut(s) 194, 696
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 3 cut(s) 30, 507, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 745, 1003
HpyF3I CTNAG 1 cut(s) 726
Hsp92II CATG 2 cut(s) 277, 302
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 906
Kzo9I GATC 4 cut(s) 262, 268, 887, 906
LmnI GCTCC 3 cut(s) 281, 753, 858
Lsp1109I GCAGC 5 cut(s) 14, 757, 873, 990, 1001
LweI GCATC 1 cut(s) 731
MaeI CTAG 4 cut(s) 102, 735, 891, 1012
MaeIII GTNAC 4 cut(s) 170, 221, 410, 622
MalI GATC 4 cut(s) 264, 270, 889, 908
MboI GATC 4 cut(s) 262, 268, 887, 906
MboII GAAGA 5 cut(s) 77, 208, 389, 508, 829
MflI RGATCY 1 cut(s) 887
MlsI TGGCCA 1 cut(s) 375
MluCI AATT 2 cut(s) 492, 910
MluNI TGGCCA 1 cut(s) 375
MlyI GAGTC 1 cut(s) 725
MmeI TCCRAC 1 cut(s) 180
Mox20I TGGCCA 1 cut(s) 375
MscI TGGCCA 1 cut(s) 375
MseI TTAA 2 cut(s) 456, 869
Msp20I TGGCCA 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 790
MspI CCGG 1 cut(s) 636
MwoI GCNNNNNNNGC 3 cut(s) 36, 745, 1003
NdeII GATC 4 cut(s) 262, 268, 887, 906
NlaIII CATG 2 cut(s) 277, 302
NmuCI GTSAC 2 cut(s) 170, 221
NspI RCATGY 1 cut(s) 277
PaeI GCATGC 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 532
PfeI GAWTC 4 cut(s) 12, 117, 165, 898
PflMI CCANNNNNTGG 1 cut(s) 138
PinAI ACCGGT 1 cut(s) 635
PkrI GCNGC 5 cut(s) 29, 747, 863, 991, 1005
PleI GAGTC 1 cut(s) 725
PpsI GAGTC 1 cut(s) 725
PspPI GGNCC 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 168
PsuI RGATCY 1 cut(s) 887
PvuII CAGCTG 1 cut(s) 790
SaqAI TTAA 2 cut(s) 456, 869
SatI GCNGC 5 cut(s) 28, 746, 862, 990, 1004
Sau3AI GATC 4 cut(s) 262, 268, 887, 906
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 1 cut(s) 725
SfaNI GCATC 1 cut(s) 731
SinI GGWCC 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 832
SmoI CTYRAG 1 cut(s) 832
SphI GCATGC 1 cut(s) 277
Sse9I AATT 2 cut(s) 492, 910
SsiI CCGC 5 cut(s) 175, 210, 630, 751, 987
SspMI CTAG 4 cut(s) 102, 735, 891, 1012
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 2 cut(s) 348, 953
TaqII GACCGA 1 cut(s) 417
TasI AATT 2 cut(s) 492, 910
TfiI GAWTC 4 cut(s) 12, 117, 165, 898
Tru1I TTAA 2 cut(s) 456, 869
Tru9I TTAA 2 cut(s) 456, 869
TscAI CASTG 1 cut(s) 143
TseFI GTSAC 2 cut(s) 170, 221
TseI GCWGC 5 cut(s) 27, 745, 861, 989, 1003
Tsp45I GTSAC 2 cut(s) 170, 221
TspDTI ATGAA 4 cut(s) 238, 315, 854, 933
TspRI CASTG 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 112
XbaI TCTAGA 1 cut(s) 890
XceI RCATGY 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 2 cut(s) 314, 506
XspI CTAG 4 cut(s) 102, 735, 891, 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.