RchiOBHm_Chr4g0396501

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000237
Physical Location & Seq
Reverse (-)
12637110 .. 12637795
686 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36887

Sequence Viewer

Length: 387 bp
ATGTCATACTATCAAGTAGATGAAGAGCTTGTCGGATTGGTTGATAGTCCTCCTCATTGTTACGAGAAGAAATGGAACCATAGGATGTATAGATATTTTAAAGAGTCTACTGGCGGCCATTTGCATCTTATTGATATTTATTCTCCTTGTCCTACTAAATTTGAAGTATTGGAGATGGGGAGAGATTACTCTGGCTGGTTTGTCAAGTACCATGTTGATCTTGATCCCTTATGCACCGCTTACCCTTGCTTCCTAAGTGAACAGTTTGTTGTTCTGTTCCTTGCTCAAGACGAAAATGAAGGGGAAAGTTCATCCCTGTTGCTGCTTCTCCTGTTACAGTCATCTCTTATAATCTTAAGAGTAAGACCTCCAAATCTTTTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

128

Amino Acids

14.94

Weight (kDa)

5.07

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
AccI GTMKAC 1 cut(s) 107
AciI CCGC 2 cut(s) 114, 237
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 1 cut(s) 209
AflII CTTAAG 1 cut(s) 355
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
AlwI GGATC 1 cut(s) 218
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 322
ApoI RAATTY 1 cut(s) 158
BbvI GCAGC 1 cut(s) 309
BccI CCATC 1 cut(s) 169
BfrI CTTAAG 1 cut(s) 355
BisI GCNGC 2 cut(s) 115, 323
BlsI GCNGC 2 cut(s) 116, 324
BmiI GGNNCC 1 cut(s) 77
BmsI GCATC 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 115
Bse8I GATNNNNATC 1 cut(s) 222
BseGI GGATG 2 cut(s) 90, 311
BseJI GATNNNNATC 1 cut(s) 222
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 309
BshFI GGCC 1 cut(s) 117
BsnI GGCC 1 cut(s) 117
Bsp143I GATC 2 cut(s) 217, 223
BspACI CCGC 2 cut(s) 114, 237
BspANI GGCC 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 77
BspPI GGATC 1 cut(s) 218
BspQI GCTCTTC 1 cut(s) 18
BspTI CTTAAG 1 cut(s) 355
BsrI ACTGG 1 cut(s) 115
BssMI GATC 2 cut(s) 217, 223
Bst4CI ACNGT 2 cut(s) 264, 339
Bst6I CTCTTC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 90, 311
BstKTI GATC 2 cut(s) 220, 226
BstMBI GATC 2 cut(s) 217, 223
BstV1I GCAGC 1 cut(s) 309
BsuRI GGCC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 90, 311
Csp6I GTAC 1 cut(s) 208
CviAII CATG 1 cut(s) 212
CviJI RGCY 3 cut(s) 28, 117, 195
CviKI_1 RGCY 3 cut(s) 28, 117, 195
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 254
DpnI GATC 2 cut(s) 219, 225
DpnII GATC 2 cut(s) 217, 223
DraI TTTAAA 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
FaeI CATG 1 cut(s) 215
FaiI YATR 6 cut(s) 7, 81, 90, 213, 232, 350
FatI CATG 1 cut(s) 211
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 2 cut(s) 115, 323
FokI GGATG 2 cut(s) 97, 298
Fsp4HI GCNGC 2 cut(s) 115, 323
GluI GCNGC 2 cut(s) 115, 323
HaeIII GGCC 1 cut(s) 117
Hin1II CATG 1 cut(s) 215
HinfI GANTC 1 cut(s) 104
Hpy166II GTNNAC 2 cut(s) 108, 260
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 2 cut(s) 221, 287
Hpy8I GTNNAC 2 cut(s) 108, 260
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 2 cut(s) 264, 339
HpyCH4V TGCA 2 cut(s) 124, 234
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 1 cut(s) 215
Kzo9I GATC 2 cut(s) 217, 223
LguI GCTCTTC 1 cut(s) 18
LpnPI CCDG 5 cut(s) 96, 177, 181, 329, 344
Lsp1109I GCAGC 1 cut(s) 309
LweI GCATC 1 cut(s) 133
MaeIII GTNAC 2 cut(s) 59, 333
MalI GATC 2 cut(s) 219, 225
MboI GATC 2 cut(s) 217, 223
MboII GAAGA 2 cut(s) 35, 79
MluCI AATT 1 cut(s) 158
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 3 cut(s) 60, 63, 378
MseI TTAA 3 cut(s) 99, 356, 385
MspCI CTTAAG 1 cut(s) 355
NdeII GATC 2 cut(s) 217, 223
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 18
PkrI GCNGC 2 cut(s) 116, 324
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PsiI TTATAA 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 77
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 3 cut(s) 99, 356, 385
SatI GCNGC 2 cut(s) 115, 323
Sau3AI GATC 2 cut(s) 217, 223
SchI GAGTC 1 cut(s) 113
SetI ASST 2 cut(s) 30, 370
SfaNI GCATC 1 cut(s) 133
SmlI CTYRAG 2 cut(s) 285, 355
SmoI CTYRAG 2 cut(s) 285, 355
Sse9I AATT 1 cut(s) 158
SsiI CCGC 2 cut(s) 114, 237
TaaI ACNGT 2 cut(s) 264, 339
TasI AATT 1 cut(s) 158
TauI GCSGC 1 cut(s) 117
Tru1I TTAA 3 cut(s) 99, 356, 385
Tru9I TTAA 3 cut(s) 99, 356, 385
TseI GCWGC 1 cut(s) 322
TspDTI ATGAA 3 cut(s) 36, 300, 312
Vha464I CTTAAG 1 cut(s) 355
XapI RAATTY 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.