Rw2G053940

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000237
Physical Location & Seq
Forward (+)
81675107 .. 81676649
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G053940.1

Sequence Viewer

Length: 1182 bp
ATGGCGCAGAGATTCTACCCCAAACGCTGCACCAGTAGCACAGCAGAAACCGTAGCCAACACCGAAGAACTCCTTACCCAAATCCTTGTGCGTGTGCCTGCTAGACCTCTGGTCCGATTCAAATGTGTCTCCAAGCACTGGCTCTCCTTATATCCGACCCCAGATTCTACCTTTCCCGTTGACCCTCTTCCTCTTTGTTGTAACAAAAGCCCATCTCGGTCTGGTTCAACCTCATTCAATCCTCTTAACTTTGCTCAAAACCAATATGATGATGACATCAGAATTATCCAGTCCTGCAATGGCCTCTTCCTGTGTCGTCTTTTTCGTTCTGAAAATGTAAACCCCCCATATTTTATTCTCAATCCTACAACCAATCAGTTCCACACACTTATTCCTCCTCCAGCTACTCTTGTTACCACCGCTACCGGTGAACAAGTAGAACCCTATATCATCTCTACTGCTTTGGCATTTGACCCCTCCAAATCACCTCATTACAAGGTGGTCTGTCTTCGGACCATTGATGGATCCAAAGACGGGGCAATCTTTCACGTAGTGATATATTCATCTGAGACTCAAAGTTGGAGGCTTCTTGATTCTTTTATTGAGAGGGTATTTAGCTTCCCTTATCATGAACGCATGCTATACTGGAATGGAGCAGTTAATTGGTTAGGCATGTATGGTGAGGTAGCATACTTTCACATAGATGAAGAACGTGACGATTTTATTGAGAATCCTCCTCACCTTTACGAGAAGGACATTTGCAAGAGGAAATCTAGATACTTTCGGGAGTCTTGTGATGGCCACCATTTGCATCTTATTGATCTTTTTGATCCCTGTCTTACTAAATTTGAAGTGTTGGAGATGGGAAGAGACTACTCTGGCTGGTTTGTCAAGTACCGTGTTGATCTTGATCCCTTGTGCGCTTCTTTCCCGCTCTTTGTTTATGGACAATTTGTTGTTCTCTTTCTCCATCGAGACGAAAATGAAGAAGAGGAAAGTTCGTCTCTGTTGCTGCATACTCCTGGTAAACTCATTTCTTATAATCTTGAGAGCAAGACCTTCAAATCTGTTGAGTTAACCCCCAAGGCCGGAGTTGATGATTCTCTCTTACGAGTTGACGCAGCTTATTATCCTAAAGCATCTAATTATCCATATATGGAGACTTTGGCCAGTGTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

393

Amino Acids

45.25

Weight (kDa)

5.76

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 71 - 247 6.4e-07 F-box associated beta propeller domain
FBA_1 PF07734 85 - 224 8.8e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1041
AccB7I CCANNNNNTGG 1 cut(s) 138
AccBSI CCGCTC 1 cut(s) 934
AciI CCGC 2 cut(s) 420, 932
AclWI GGATC 4 cut(s) 519, 532, 824, 905
AcoI YGGCCR 2 cut(s) 799, 1167
AcsI RAATTY 1 cut(s) 845
AdeI CACNNNGTG 1 cut(s) 553
AfaI GTAC 1 cut(s) 896
AfiI CCNNNNNNNGG 3 cut(s) 138, 534, 1088
AgeI ACCGGT 1 cut(s) 425
AgsI TTSAA 5 cut(s) 121, 228, 238, 851, 1063
AhdI GACNNNNNGTC 1 cut(s) 110
AjnI CCWGG 1 cut(s) 1021
AluBI AGCT 3 cut(s) 404, 618, 1124
AluI AGCT 3 cut(s) 404, 618, 1124
Alw26I GTCTC 6 cut(s) 133, 563, 864, 969, 1008, 1154
AlwI GGATC 4 cut(s) 519, 532, 824, 905
AoxI GGCC 4 cut(s) 301, 799, 1086, 1167
ApeKI GCWGC 3 cut(s) 27, 1012, 1121
ApoI RAATTY 1 cut(s) 845
AsiGI ACCGGT 1 cut(s) 425
AspLEI GCGC 2 cut(s) 7, 923
AspS9I GGNCC 2 cut(s) 112, 513
AsuHPI GGTGA 4 cut(s) 440, 477, 692, 731
AvaII GGWCC 2 cut(s) 112, 513
BalI TGGCCA 2 cut(s) 801, 1169
BamHI GGATCC 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 500
BbvI GCAGC 3 cut(s) 14, 999, 1133
BccI CCATC 5 cut(s) 220, 515, 791, 856, 978
BciT130I CCWGG 1 cut(s) 1023
BcoDI GTCTC 6 cut(s) 133, 563, 864, 969, 1008, 1154
BfaI CTAG 2 cut(s) 102, 774
BisI GCNGC 3 cut(s) 28, 1013, 1122
BlsI GCNGC 3 cut(s) 29, 1014, 1123
Bme1390I CCNGG 1 cut(s) 1023
Bme18I GGWCC 2 cut(s) 112, 513
BmeRI GACNNNNNGTC 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 112, 513
BmiI GGNNCC 1 cut(s) 526
BmrFI CCNGG 1 cut(s) 1023
BmsI GCATC 2 cut(s) 820, 1148
BpiI GAAGAC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 1067
BsaAI YACGTR 1 cut(s) 550
BsaBI GATNNNNATC 1 cut(s) 909
BsaJI CCNNGG 1 cut(s) 1083
BsaWI WCCGGW 1 cut(s) 425
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 534, 1088
Bse118I RCCGGY 1 cut(s) 425
Bse1I ACTGG 5 cut(s) 33, 143, 289, 650, 1170
Bse3DI GCAATG 1 cut(s) 304
Bse8I GATNNNNATC 1 cut(s) 909
BseBI CCWGG 1 cut(s) 1023
BseDI CCNNGG 1 cut(s) 1083
BseJI GATNNNNATC 1 cut(s) 909
BseLI CCNNNNNNNGG 3 cut(s) 138, 534, 1088
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 558
BseNI ACTGG 5 cut(s) 33, 143, 289, 650, 1170
BseRI GAGGAG 2 cut(s) 387, 726
BseXI GCAGC 3 cut(s) 14, 999, 1133
BsgI GTGCAG 1 cut(s) 13
BshFI GGCC 4 cut(s) 303, 801, 1088, 1169
BshTI ACCGGT 1 cut(s) 425
BsiSI CCGG 2 cut(s) 426, 1089
BslI CCNNNNNNNGG 3 cut(s) 138, 534, 1088
BsmAI GTCTC 6 cut(s) 133, 563, 864, 969, 1008, 1154
BsmBI CGTCTC 2 cut(s) 969, 1008
BsnI GGCC 4 cut(s) 303, 801, 1088, 1169
Bsp143I GATC 5 cut(s) 524, 820, 829, 904, 910
BspACI CCGC 2 cut(s) 420, 932
BspANI GGCC 4 cut(s) 303, 801, 1088, 1169
BspCNI CTCAG 1 cut(s) 559
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 526
BspPI GGATC 4 cut(s) 519, 532, 824, 905
BsrBI CCGCTC 1 cut(s) 934
BsrDI GCAATG 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 425
BsrI ACTGG 5 cut(s) 33, 143, 289, 650, 1170
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 1 cut(s) 1083
BssMI GATC 5 cut(s) 524, 820, 829, 904, 910
BssT1I CCWWGG 1 cut(s) 1083
Bst2UI CCWGG 1 cut(s) 1023
Bst4CI ACNGT 2 cut(s) 52, 899
Bst6I CTCTTC 4 cut(s) 192, 311, 862, 984
BstBAI YACGTR 1 cut(s) 550
BstC8I GCNNGC 2 cut(s) 99, 638
BstDEI CTNAG 1 cut(s) 567
BstHHI GCGC 2 cut(s) 7, 923
BstKTI GATC 5 cut(s) 527, 823, 832, 907, 913
BstMAI GTCTC 6 cut(s) 133, 563, 864, 969, 1008, 1154
BstMBI GATC 5 cut(s) 524, 820, 829, 904, 910
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 1 cut(s) 1023
BstNSI RCATGY 2 cut(s) 640, 676
BstSCI CCNGG 1 cut(s) 1021
BstV1I GCAGC 3 cut(s) 14, 999, 1133
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
BsuRI GGCC 4 cut(s) 303, 801, 1088, 1169
BtsIMutI CAGTG 2 cut(s) 136, 1177
Cac8I GCNNGC 2 cut(s) 99, 638
CciI TCATGA 1 cut(s) 628
CfoI GCGC 2 cut(s) 7, 923
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 112, 513
CseI GACGC 1 cut(s) 1127
Csp6I GTAC 1 cut(s) 895
CspAI ACCGGT 1 cut(s) 425
CviAII CATG 3 cut(s) 629, 637, 673
CviQI GTAC 1 cut(s) 895
DdeI CTNAG 1 cut(s) 567
DpnI GATC 5 cut(s) 526, 822, 831, 906, 912
DpnII GATC 5 cut(s) 524, 820, 829, 904, 910
DraIII CACNNNGTG 1 cut(s) 553
DriI GACNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 2 cut(s) 799, 1167
Eam1104I CTCTTC 4 cut(s) 192, 311, 862, 984
Eam1105I GACNNNNNGTC 1 cut(s) 110
EarI CTCTTC 4 cut(s) 192, 311, 862, 984
Eco130I CCWWGG 1 cut(s) 1083
Eco47I GGWCC 2 cut(s) 112, 513
EcoRII CCWGG 1 cut(s) 1021
EcoT14I CCWWGG 1 cut(s) 1083
ErhI CCWWGG 1 cut(s) 1083
Esp3I CGTCTC 2 cut(s) 969, 1008
FaeI CATG 3 cut(s) 632, 640, 676
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FatI CATG 3 cut(s) 628, 636, 672
FauI CCCGC 1 cut(s) 939
Fnu4HI GCNGC 3 cut(s) 28, 1013, 1122
Fsp4HI GCNGC 3 cut(s) 28, 1013, 1122
FspBI CTAG 2 cut(s) 102, 774
GlaI GCGC 2 cut(s) 6, 922
GluI GCNGC 3 cut(s) 28, 1013, 1122
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 4 cut(s) 303, 801, 1088, 1169
HapII CCGG 2 cut(s) 426, 1089
HgaI GACGC 1 cut(s) 1127
HhaI GCGC 2 cut(s) 7, 923
Hin1II CATG 3 cut(s) 632, 640, 676
Hin6I GCGC 2 cut(s) 5, 921
HinP1I GCGC 2 cut(s) 5, 921
HincII GTYRAC 3 cut(s) 181, 1077, 1117
HindII GTYRAC 3 cut(s) 181, 1077, 1117
HinfI GANTC 8 cut(s) 12, 117, 164, 571, 593, 730, 788, 1100
HpaI GTTAAC 1 cut(s) 1077
HpaII CCGG 2 cut(s) 426, 1089
HphI GGTGA 4 cut(s) 440, 477, 692, 731
Hpy166II GTNNAC 6 cut(s) 181, 340, 431, 1028, 1077, 1117
Hpy188I TCNGA 6 cut(s) 116, 156, 281, 331, 513, 568
Hpy188III TCNNGA 7 cut(s) 590, 629, 774, 785, 908, 974, 1046
Hpy8I GTNNAC 6 cut(s) 181, 340, 431, 1028, 1077, 1117
HpyAV CCTTC 2 cut(s) 745, 1069
HpyCH4III ACNGT 2 cut(s) 52, 899
HpyCH4IV ACGT 2 cut(s) 549, 712
HpyCH4V TGCA 5 cut(s) 30, 297, 762, 811, 1015
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 1 cut(s) 567
HpySE526I ACGT 2 cut(s) 549, 712
Hsp92II CATG 3 cut(s) 632, 640, 676
HspAI GCGC 2 cut(s) 5, 921
KspAI GTTAAC 1 cut(s) 1077
Kzo9I GATC 5 cut(s) 524, 820, 829, 904, 910
LmnI GCTCC 1 cut(s) 653
Lsp1109I GCAGC 3 cut(s) 14, 999, 1133
LweI GCATC 2 cut(s) 820, 1148
MaeI CTAG 2 cut(s) 102, 774
MaeII ACGT 2 cut(s) 549, 712
MaeIII GTNAC 3 cut(s) 200, 412, 713
MalI GATC 5 cut(s) 526, 822, 831, 906, 912
MbiI CCGCTC 1 cut(s) 934
MboI GATC 5 cut(s) 524, 820, 829, 904, 910
MboII GAAGA 8 cut(s) 77, 179, 298, 500, 719, 879, 998, 1001
MflI RGATCY 1 cut(s) 524
MlsI TGGCCA 2 cut(s) 801, 1169
MluCI AATT 5 cut(s) 282, 661, 845, 950, 1144
MluNI TGGCCA 2 cut(s) 801, 1169
MlyI GAGTC 2 cut(s) 565, 797
MmeI TCCRAC 3 cut(s) 179, 560, 837
Mox20I TGGCCA 2 cut(s) 801, 1169
MscI TGGCCA 2 cut(s) 801, 1169
MseI TTAA 3 cut(s) 246, 660, 1076
MslI CAYNNNNRTG 1 cut(s) 702
Msp20I TGGCCA 2 cut(s) 801, 1169
MspI CCGG 2 cut(s) 426, 1089
MspR9I CCNGG 1 cut(s) 1023
MvaI CCWGG 1 cut(s) 1023
MwoI GCNNNNNNNGC 1 cut(s) 36
NdeII GATC 5 cut(s) 524, 820, 829, 904, 910
NlaIII CATG 3 cut(s) 632, 640, 676
NlaIV GGNNCC 1 cut(s) 526
NmuCI GTSAC 1 cut(s) 713
NspI RCATGY 2 cut(s) 640, 676
PaeI GCATGC 1 cut(s) 640
PagI TCATGA 1 cut(s) 628
PcsI WCGNNNNNNNCGW 1 cut(s) 322
PfeI GAWTC 6 cut(s) 12, 117, 164, 593, 730, 1100
PflMI CCANNNNNTGG 1 cut(s) 138
PinAI ACCGGT 1 cut(s) 425
PkrI GCNGC 3 cut(s) 29, 1014, 1123
PleI GAGTC 2 cut(s) 565, 796
PpsI GAGTC 2 cut(s) 565, 796
Ppu21I YACGTR 1 cut(s) 550
PsiI TTATAA 1 cut(s) 1041
Psp6I CCWGG 1 cut(s) 1021
PspGI CCWGG 1 cut(s) 1021
PspN4I GGNNCC 1 cut(s) 526
PspPI GGNCC 2 cut(s) 112, 513
PsuI RGATCY 1 cut(s) 524
RsaI GTAC 1 cut(s) 896
RsaNI GTAC 1 cut(s) 895
RseI CAYNNNNRTG 1 cut(s) 702
SaqAI TTAA 3 cut(s) 246, 660, 1076
SatI GCNGC 3 cut(s) 28, 1013, 1122
Sau3AI GATC 5 cut(s) 524, 820, 829, 904, 910
Sau96I GGNCC 2 cut(s) 112, 513
SchI GAGTC 2 cut(s) 565, 797
ScrFI CCNGG 1 cut(s) 1023
SfaNI GCATC 2 cut(s) 820, 1148
SinI GGWCC 2 cut(s) 112, 513
SmiMI CAYNNNNRTG 1 cut(s) 702
SmlI CTYRAG 1 cut(s) 1046
SmoI CTYRAG 1 cut(s) 1046
SphI GCATGC 1 cut(s) 640
Sse9I AATT 5 cut(s) 282, 661, 845, 950, 1144
SsiI CCGC 2 cut(s) 420, 932
SspMI CTAG 2 cut(s) 102, 774
StyD4I CCNGG 1 cut(s) 1021
StyI CCWWGG 1 cut(s) 1083
TaaI ACNGT 2 cut(s) 52, 899
TaiI ACGT 2 cut(s) 552, 715
TaqI TCGA 1 cut(s) 973
TaqII GACCGA 1 cut(s) 207
TasI AATT 5 cut(s) 282, 661, 845, 950, 1144
TfiI GAWTC 6 cut(s) 12, 117, 164, 593, 730, 1100
Tru1I TTAA 3 cut(s) 246, 660, 1076
Tru9I TTAA 3 cut(s) 246, 660, 1076
TscAI CASTG 2 cut(s) 143, 1177
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 3 cut(s) 27, 1012, 1121
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 4 cut(s) 552, 645, 720, 999
TspRI CASTG 2 cut(s) 143, 1177
Van91I CCANNNNNTGG 1 cut(s) 138
VpaK11BI GGWCC 2 cut(s) 112, 513
XapI RAATTY 1 cut(s) 845
XbaI TCTAGA 1 cut(s) 773
XceI RCATGY 2 cut(s) 640, 676
XcmI CCANNNNNNNNNTGG 1 cut(s) 296
XspI CTAG 2 cut(s) 102, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.