FvH4_6g53620

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000237
Physical Location & Seq
Forward (+)
39274699 .. 39276988
2290 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53620.t2

Sequence Viewer

Length: 1239 bp
ATGATGAAGAGACTAAAACGCTGCAGCAGCAGCAGCTTACCAGAAACCATATGGGACTATGATGATATCTTTTCGGAAATCCTTGTCCGTGTTCCAGCTCAAATTCTGCTCCGCTTCAAATGTGTCTCCAAGAATTGGCTCTCTTTTATCTCTGACCCCAAGTTCTGTCACCTTCACACCCTTCGGAACCCGAACCCTTCCGCTTCCGCGGTCTTTTGCAATCTCACCAGATACATTAGCTTTATCCCTCTTGATTTGGATCATGATCGCACTACTAGTACAGGGTCTGGTTCACCCAGCTGCAACCCTCTGAAATTCATTGCGAACGTATGTCATGACAACATCAAGATTATCCAGTCCTGCAACGGCCTCTTCTTGTGCCATCCTGAAATTGTACTGAACTCTGTTATCCACAGGTCGGACGTGCGGCGAGTTATTACACCTCTTTATCATTATGTTCTCAATCCCACAACCAACCAGTTCACCAAACTTGTTCCTCCAGCTGCTGCCGCCGCCACTACTACTGAACCCCGAATCTTCGGCTGTGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGTGGTCTTCCTTTGGTTCCGTGATGAACCAACTCCATGCGGCTGGTGCAGTTACCATAACATAGAGATATATTCTTCCGAGACTAAAAGTTGGAGTCTTGTCAATTCTTCTTTTGAGACTCAAGGTCAAATTTCCTACCAAGATGGGGTATACTGCAACGGTGCAGTTCACTGGGTTGGCCGGATTTGTGAGATGGCATATTATCACTTAGAAGAAGAGCGTGTTGGATTGGTTGATGGCCTTCCTCGTTGTGAGGAGAACTGGGAAACTAGGGAGTATAGATACTTTAAGGAGTCGAGGGACGGCCATTTGCATCTTATTGATATTTATTCGCCTTGTTTTACTAAATTTGAAGTGTTGGAGATGGGAAGAGACTACTCTGGGTGGTTTGTCAAGTACAATGTGGATCTTGATCTTTTATGCACTGCTTACCCACGCTTTAAGGTGTTTTGTGTTCTCTTTCTTGCTAAAGGGGAAAATGAAGAGGAAAGTTCATCTCTGTTGCTGCATGCTCCTGGAAAAGTCTTCTCGTACAATGTTAAGAGTAACACCTTCAAATCGTTCGACTTAACACCTCAAGCCGGCGTTGATGATTCTTTGCAACGAGTTGGTCAGCGTAATTATCGATATATCGAGTCCTTGGCTTGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

413

Amino Acids

47.31

Weight (kDa)

6.53

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 60 - 164 5.7e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 135
AccI GTMKAC 1 cut(s) 735
AccII CGCG 1 cut(s) 209
AciI CCGC 8 cut(s) 112, 201, 207, 209, 427, 510, 513, 624
AclWI GGATC 2 cut(s) 267, 999
AcoI YGGCCR 2 cut(s) 763, 889
AcsI RAATTY 4 cut(s) 102, 314, 714, 932
AfaI GTAC 4 cut(s) 280, 396, 983, 1118
AfiI CCNNNNNNNGG 4 cut(s) 135, 418, 730, 1166
AgsI TTSAA 3 cut(s) 118, 938, 1141
AhdI GACNNNNNGTC 1 cut(s) 708
AhlI ACTAGT 1 cut(s) 275
AjiI CACGTC 1 cut(s) 424
AjnI CCWGG 1 cut(s) 1099
AjuI GAANNNNNNNTTGG 2 cut(s) 792, 824
AluBI AGCT 5 cut(s) 36, 98, 240, 300, 503
AluI AGCT 5 cut(s) 36, 98, 240, 300, 503
Alw26I GTCTC 5 cut(s) 4, 130, 659, 695, 951
AlwI GGATC 2 cut(s) 267, 999
AlwNI CAGNNNCTG 2 cut(s) 287, 506
AoxI GGCC 4 cut(s) 367, 763, 823, 889
ApeKI GCWGC 9 cut(s) 21, 24, 27, 30, 33, 300, 503, 506, 1090
ApoI RAATTY 4 cut(s) 102, 314, 714, 932
AsuHPI GGTGA 5 cut(s) 161, 217, 285, 475, 564
BbsI GAAGAC 2 cut(s) 583, 1102
BbvI GCAGC 9 cut(s) 8, 36, 39, 42, 45, 287, 490, 493, 1077
BccI CCATC 5 cut(s) 390, 722, 772, 815, 943
BceAI ACGGC 2 cut(s) 382, 904
BciT130I CCWGG 1 cut(s) 1101
BcoDI GTCTC 5 cut(s) 4, 130, 659, 695, 951
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 2 cut(s) 276, 855
BfmI CTRYAG 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 1101
BmeRI GACNNNNNGTC 1 cut(s) 708
BmgBI CACGTC 1 cut(s) 424
BmiI GGNNCC 2 cut(s) 188, 602
BmrFI CCNGG 1 cut(s) 1101
BmrI ACTGGG 2 cut(s) 766, 856
BmsI GCATC 1 cut(s) 907
BmuI ACTGGG 2 cut(s) 766, 856
BpiI GAAGAC 2 cut(s) 583, 1102
BpmI CTGGAG 1 cut(s) 483
BpuEI CTTGAG 2 cut(s) 690, 1146
Bsa29I ATCGAT 1 cut(s) 1210
BsaBI GATNNNNATC 3 cut(s) 258, 264, 996
BsaJI CCNNGG 2 cut(s) 207, 1224
Bsc4I CCNNNNNNNGG 4 cut(s) 135, 418, 730, 1166
Bse118I RCCGGY 1 cut(s) 1166
Bse1I ACTGG 4 cut(s) 355, 478, 761, 851
Bse3DI GCAATG 1 cut(s) 318
Bse8I GATNNNNATC 3 cut(s) 258, 264, 996
BseBI CCWGG 1 cut(s) 1101
BseCI ATCGAT 1 cut(s) 1210
BseDI CCNNGG 2 cut(s) 207, 1224
BseGI GGATG 1 cut(s) 382
BseJI GATNNNNATC 3 cut(s) 258, 264, 996
BseLI CCNNNNNNNGG 4 cut(s) 135, 418, 730, 1166
BseMI GCAATG 1 cut(s) 318
BseNI ACTGG 4 cut(s) 355, 478, 761, 851
BseRI GAGGAG 1 cut(s) 854
BseXI GCAGC 9 cut(s) 8, 36, 39, 42, 45, 287, 490, 493, 1077
BseYI CCCAGC 1 cut(s) 296
BsgI GTGCAG 2 cut(s) 652, 768
Bsh1236I CGCG 1 cut(s) 209
BshFI GGCC 4 cut(s) 369, 765, 825, 891
BshVI ATCGAT 1 cut(s) 1210
BsiSI CCGG 2 cut(s) 766, 1167
BslFI GGGAC 2 cut(s) 68, 899
BslI CCNNNNNNNGG 4 cut(s) 135, 418, 730, 1166
BsmAI GTCTC 5 cut(s) 4, 130, 659, 695, 951
BsmFI GGGAC 2 cut(s) 68, 899
BsnI GGCC 4 cut(s) 369, 765, 825, 891
Bsp143I GATC 4 cut(s) 259, 265, 991, 997
BspACI CCGC 8 cut(s) 112, 201, 207, 209, 427, 510, 513, 624
BspANI GGCC 4 cut(s) 369, 765, 825, 891
BspDI ATCGAT 1 cut(s) 1210
BspFNI CGCG 1 cut(s) 209
BspHI TCATGA 2 cut(s) 262, 334
BspLI GGNNCC 2 cut(s) 188, 602
BspMAI CTGCAG 1 cut(s) 26
BspPI GGATC 2 cut(s) 267, 999
BspQI GCTCTTC 1 cut(s) 795
BsrDI GCAATG 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 1166
BsrI ACTGG 4 cut(s) 355, 478, 761, 851
BssAI RCCGGY 1 cut(s) 1166
BssECI CCNNGG 2 cut(s) 207, 1224
BssMI GATC 4 cut(s) 259, 265, 991, 997
BssNAI GTATAC 1 cut(s) 736
BssT1I CCWWGG 1 cut(s) 1224
Bst1107I GTATAC 1 cut(s) 736
Bst2UI CCWGG 1 cut(s) 1101
Bst4CI ACNGT 1 cut(s) 746
Bst6I CTCTTC 5 cut(s) 2, 377, 795, 949, 1062
BstC8I GCNNGC 2 cut(s) 1095, 1168
BstDEI CTNAG 1 cut(s) 793
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 1 cut(s) 209
BstKTI GATC 4 cut(s) 262, 268, 994, 1000
BstMAI GTCTC 5 cut(s) 4, 130, 659, 695, 951
BstMBI GATC 4 cut(s) 259, 265, 991, 997
BstMWI GCNNNNNNNGC 6 cut(s) 27, 30, 33, 509, 512, 630
BstNI CCWGG 1 cut(s) 1101
BstNSI RCATGY 1 cut(s) 1097
BstSCI CCNGG 1 cut(s) 1099
BstSFI CTRYAG 1 cut(s) 22
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 9 cut(s) 8, 36, 39, 42, 45, 287, 490, 493, 1077
BstV2I GAAGAC 2 cut(s) 583, 1102
BstX2I RGATCY 1 cut(s) 991
BstXI CCANNNNNNTGG 1 cut(s) 627
BstYI RGATCY 1 cut(s) 991
BstZ17I GTATAC 1 cut(s) 736
Bsu15I ATCGAT 1 cut(s) 1210
BsuRI GGCC 4 cut(s) 369, 765, 825, 891
BsuTUI ATCGAT 1 cut(s) 1210
BtgI CCRYGG 1 cut(s) 207
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 1008
BtsIMutI CAGTG 2 cut(s) 754, 1008
Cac8I GCNNGC 2 cut(s) 1095, 1168
CaiI CAGNNNCTG 2 cut(s) 287, 506
CciI TCATGA 2 cut(s) 262, 334
Cfr10I RCCGGY 1 cut(s) 1166
Cfr42I CCGCGG 1 cut(s) 210
ClaI ATCGAT 1 cut(s) 1210
Csp6I GTAC 4 cut(s) 279, 395, 982, 1117
CviAII CATG 4 cut(s) 263, 335, 621, 1094
CviQI GTAC 4 cut(s) 279, 395, 982, 1117
DdeI CTNAG 1 cut(s) 793
DpnI GATC 4 cut(s) 261, 267, 993, 999
DpnII GATC 4 cut(s) 259, 265, 991, 997
DriI GACNNNNNGTC 1 cut(s) 708
EaeI YGGCCR 2 cut(s) 763, 889
Eam1104I CTCTTC 5 cut(s) 2, 377, 795, 949, 1062
Eam1105I GACNNNNNGTC 1 cut(s) 708
EarI CTCTTC 5 cut(s) 2, 377, 795, 949, 1062
Eco130I CCWWGG 1 cut(s) 1224
Eco32I GATATC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 1099
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 1224
ErhI CCWWGG 1 cut(s) 1224
FaeI CATG 4 cut(s) 266, 338, 624, 1097
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FaqI GGGAC 2 cut(s) 68, 899
FatI CATG 4 cut(s) 262, 334, 620, 1093
FauNDI CATATG 1 cut(s) 50
FblI GTMKAC 1 cut(s) 735
FokI GGATG 1 cut(s) 369
FspBI CTAG 2 cut(s) 276, 855
GsaI CCCAGC 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 4 cut(s) 369, 765, 825, 891
HapII CCGG 2 cut(s) 766, 1167
Hin1II CATG 4 cut(s) 266, 338, 624, 1097
HinfI GANTC 6 cut(s) 534, 679, 703, 878, 1178, 1220
HpaII CCGG 2 cut(s) 766, 1167
HphI GGTGA 5 cut(s) 161, 217, 285, 475, 564
Hpy166II GTNNAC 4 cut(s) 293, 483, 736, 754
Hpy188I TCNGA 6 cut(s) 76, 154, 186, 312, 421, 664
Hpy188III TCNNGA 6 cut(s) 251, 263, 335, 346, 386, 995
Hpy8I GTNNAC 4 cut(s) 293, 483, 736, 754
HpyAV CCTTC 6 cut(s) 182, 191, 207, 573, 836, 1147
HpyCH4III ACNGT 1 cut(s) 746
HpyCH4IV ACGT 2 cut(s) 327, 423
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 30, 33, 509, 512, 630
HpyF3I CTNAG 1 cut(s) 793
HpySE526I ACGT 2 cut(s) 327, 423
Hsp92II CATG 4 cut(s) 266, 338, 624, 1097
KroI GCCGGC 1 cut(s) 1166
KroNI GCCGGC 1 cut(s) 1168
KspI CCGCGG 1 cut(s) 210
Kzo9I GATC 4 cut(s) 259, 265, 991, 997
LguI GCTCTTC 1 cut(s) 795
LmnI GCTCC 2 cut(s) 114, 1102
Lsp1109I GCAGC 9 cut(s) 8, 36, 39, 42, 45, 287, 490, 493, 1077
LweI GCATC 1 cut(s) 907
MaeI CTAG 2 cut(s) 276, 855
MaeII ACGT 2 cut(s) 327, 423
MaeIII GTNAC 3 cut(s) 167, 635, 1130
MalI GATC 4 cut(s) 261, 267, 993, 999
MboI GATC 4 cut(s) 259, 265, 991, 997
MflI RGATCY 1 cut(s) 991
MluCI AATT 8 cut(s) 102, 133, 314, 390, 688, 714, 932, 1204
MlyI GAGTC 4 cut(s) 688, 697, 887, 1229
MmeI TCCRAC 4 cut(s) 399, 656, 790, 924
MroNI GCCGGC 1 cut(s) 1166
MseI TTAA 4 cut(s) 873, 1026, 1125, 1154
MspA1I CMGCKG 3 cut(s) 209, 300, 503
MspI CCGG 2 cut(s) 766, 1167
MspR9I CCNGG 1 cut(s) 1101
MvaI CCWGG 1 cut(s) 1101
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 6 cut(s) 27, 30, 33, 509, 512, 630
NaeI GCCGGC 1 cut(s) 1168
NdeI CATATG 1 cut(s) 50
NdeII GATC 4 cut(s) 259, 265, 991, 997
NgoMIV GCCGGC 1 cut(s) 1166
NlaIII CATG 4 cut(s) 266, 338, 624, 1097
NlaIV GGNNCC 2 cut(s) 188, 602
NmuCI GTSAC 1 cut(s) 167
NspI RCATGY 1 cut(s) 1097
PaeI GCATGC 1 cut(s) 1097
PagI TCATGA 2 cut(s) 262, 334
PciSI GCTCTTC 1 cut(s) 795
PdiI GCCGGC 1 cut(s) 1168
PfeI GAWTC 2 cut(s) 534, 1178
PflMI CCANNNNNTGG 1 cut(s) 135
PfoI TCCNGGA 1 cut(s) 1099
PleI GAGTC 4 cut(s) 687, 697, 886, 1228
PpsI GAGTC 4 cut(s) 687, 697, 886, 1228
Psp6I CCWGG 1 cut(s) 1099
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 1 cut(s) 1099
PspN4I GGNNCC 2 cut(s) 188, 602
PstI CTGCAG 1 cut(s) 26
PstNI CAGNNNCTG 2 cut(s) 287, 506
PsuI RGATCY 1 cut(s) 991
PvuII CAGCTG 2 cut(s) 300, 503
RsaI GTAC 4 cut(s) 280, 396, 983, 1118
RsaNI GTAC 4 cut(s) 279, 395, 982, 1117
SacII CCGCGG 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 795
SaqAI TTAA 4 cut(s) 873, 1026, 1125, 1154
Sau3AI GATC 4 cut(s) 259, 265, 991, 997
SchI GAGTC 4 cut(s) 688, 697, 887, 1229
ScrFI CCNGG 1 cut(s) 1101
SfaNI GCATC 1 cut(s) 907
SfcI CTRYAG 1 cut(s) 22
Sfr303I CCGCGG 1 cut(s) 210
SgrBI CCGCGG 1 cut(s) 210
SmlI CTYRAG 2 cut(s) 705, 1161
SmoI CTYRAG 2 cut(s) 705, 1161
SpeI ACTAGT 1 cut(s) 275
SphI GCATGC 1 cut(s) 1097
Sse9I AATT 8 cut(s) 102, 133, 314, 390, 688, 714, 932, 1204
SsiI CCGC 8 cut(s) 112, 201, 207, 209, 427, 510, 513, 624
SspMI CTAG 2 cut(s) 276, 855
StyD4I CCNGG 1 cut(s) 1099
StyI CCWWGG 1 cut(s) 1224
TaaI ACNGT 1 cut(s) 746
TaiI ACGT 2 cut(s) 330, 426
TaqI TCGA 4 cut(s) 881, 1149, 1210, 1218
TasI AATT 8 cut(s) 102, 133, 314, 390, 688, 714, 932, 1204
TatI WGTACW 3 cut(s) 278, 394, 981
TauI GCSGC 4 cut(s) 430, 512, 515, 627
TfiI GAWTC 2 cut(s) 534, 1178
Tru1I TTAA 4 cut(s) 873, 1026, 1125, 1154
Tru9I TTAA 4 cut(s) 873, 1026, 1125, 1154
TscAI CASTG 2 cut(s) 761, 1015
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 9 cut(s) 21, 24, 27, 30, 33, 300, 503, 506, 1090
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 5 cut(s) 20, 307, 624, 1068, 1080
TspGWI ACGGA 2 cut(s) 77, 593
TspRI CASTG 2 cut(s) 761, 1015
Van91I CCANNNNNTGG 1 cut(s) 135
XapI RAATTY 4 cut(s) 102, 314, 714, 932
XceI RCATGY 1 cut(s) 1097
XcmI CCANNNNNNNNNTGG 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 735
XspI CTAG 2 cut(s) 276, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.