Rorug04G0006000

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000237
Physical Location & Seq
Reverse (-)
1081442 .. 1082582
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0006000.1

Sequence Viewer

Length: 945 bp
ATGGAGACGACGAAGTCCGTGCACTTCTGTTTCTGTGAGCATATCGCAGTAATATTTGACTCTACTCGCGACGTTGTTCGCTCCATCAAATTGAGCGATTTGTTATCACCAGTTCACCACCACCACCAACAGCAGCAGCAGCTTCGTTTGAGCACGAAACATATCATGATTCTGAAACCGGTGGTTGGTCACCCTTTCCGTGGGGTTGCTGTCGCTTCGGGTCCCAAATTCTTTTCGCCGGCGGCAACTAAGCCGCACGCGACTCCATTTACGGAAAGTCGACCGAACTATCACCACTATACCGAGGCTCCTCCTGATTTTGCAGTATTCGACCCCGAAGGTGATGGAGAGTTTGAGGCTAAATGGTTGCCTCTGGAATCTTCTCCTCCGGCTATACTCTACGATGAGAAATCCCACAAGCTGAATGAGTTTATGTATTGTGCTGTTGATTCCAAAATCTTAGTCTGGAATCAAGATAAGGCCGGGGTTTACCTCTTTGAAGTGAGCCTACCCGAGAAAGGATGGATAGAGTTGCACTCTCCTCTAGCAACCACTCTTCCCCTTCAGACCAAAAAAAAAAAAAAAAAAACCACTCTTCCCTTTGTTAAGGGTTGTTGGGGTGACACTGCAAAGCTCGCCGATCATCATGGTGGTGGAGGAACCCTAATATTTACCTTTGACTGTACAAGAGGATGTAAAGTTAGTGATGGTTTCATCTATTATGGGCCTCAGATAAGTAACAATATTAGCGTACAAGTTTTGATCATGTCCTATAATTTAGATTCTTTGCAAGCCATGAAACCCCTCCTGCAGCTGTCGGAAATCCCTCCTGAATTTCGCAATGATCCATGCGTAAGAGCAGTTGGTCCAAACCAGTGTTGTCTTGTGCATAGATCACAAAGTGTGCCTTATTCTTCACAAATATTTCTATGCATTATACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

314

Amino Acids

35.25

Weight (kDa)

7.64

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 280
AccII CGCG 2 cut(s) 69, 260
AciI CCGC 2 cut(s) 242, 254
AclWI GGATC 1 cut(s) 839
AcsI RAATTY 2 cut(s) 227, 833
AcuI CTGAAG 1 cut(s) 548
AdeI CACNNNGTG 1 cut(s) 902
AfaI GTAC 2 cut(s) 685, 753
AfiI CCNNNNNNNGG 3 cut(s) 185, 200, 518
AgeI ACCGGT 1 cut(s) 178
AgsI TTSAA 1 cut(s) 500
AluBI AGCT 4 cut(s) 142, 421, 634, 814
AluI AGCT 4 cut(s) 142, 421, 634, 814
Alw21I GWGCWC 2 cut(s) 24, 155
Alw44I GTGCAC 1 cut(s) 20
AlwI GGATC 1 cut(s) 839
Ama87I CYCGRG 1 cut(s) 512
AoxI GGCC 2 cut(s) 480, 725
ApaLI GTGCAC 1 cut(s) 20
ApeKI GCWGC 4 cut(s) 133, 136, 139, 811
ApoI RAATTY 2 cut(s) 227, 833
ArsI GACNNNNNNTTYG 2 cut(s) 447, 479
AsiGI ACCGGT 1 cut(s) 178
AspS9I GGNCC 3 cut(s) 221, 725, 866
AsuC2I CCSGG 1 cut(s) 484
AsuHPI GGTGA 6 cut(s) 99, 107, 182, 284, 353, 632
AvaI CYCGRG 1 cut(s) 512
AvaII GGWCC 2 cut(s) 221, 866
BaeGI GKGCMC 1 cut(s) 24
BarI GAAGNNNNNNTAC 2 cut(s) 492, 524
Bbv12I GWGCWC 2 cut(s) 24, 155
BbvI GCAGC 4 cut(s) 145, 148, 151, 823
BccI CCATC 4 cut(s) 92, 338, 516, 701
BcgI CGANNNNNNTGC 3 cut(s) 35, 125, 159
BclI TGATCA 1 cut(s) 762
BcnI CCSGG 1 cut(s) 484
BfaI CTAG 1 cut(s) 545
BfmI CTRYAG 1 cut(s) 809
BisI GCNGC 6 cut(s) 134, 137, 140, 243, 254, 812
BlsI GCNGC 6 cut(s) 135, 138, 141, 244, 255, 813
Bme1390I CCNGG 1 cut(s) 484
Bme18I GGWCC 2 cut(s) 221, 866
BmeT110I CYCGRG 1 cut(s) 512
BmgT120I GGNCC 3 cut(s) 221, 725, 866
BmiI GGNNCC 4 cut(s) 222, 223, 309, 661
BmrFI CCNGG 1 cut(s) 484
BplI GAGNNNNNCTC 2 cut(s) 521, 553
BpuMI CCSGG 1 cut(s) 484
BsaJI CCNNGG 3 cut(s) 199, 303, 483
BsaWI WCCGGW 1 cut(s) 178
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 200, 518
Bse118I RCCGGY 2 cut(s) 178, 238
Bse1I ACTGG 2 cut(s) 110, 874
Bse3DI GCAATG 1 cut(s) 847
BseDI CCNNGG 3 cut(s) 199, 303, 483
BseGI GGATG 2 cut(s) 527, 698
BseLI CCNNNNNNNGG 3 cut(s) 185, 200, 518
BseMI GCAATG 1 cut(s) 847
BseMII CTCAG 1 cut(s) 743
BseNI ACTGG 2 cut(s) 110, 874
BseRI GAGGAG 3 cut(s) 300, 375, 531
BseSI GKGCMC 1 cut(s) 24
BseXI GCAGC 4 cut(s) 145, 148, 151, 823
Bsh1236I CGCG 2 cut(s) 69, 260
Bsh1285I CGRYCG 1 cut(s) 284
BshFI GGCC 2 cut(s) 482, 727
BshTI ACCGGT 1 cut(s) 178
BsiEI CGRYCG 1 cut(s) 284
BsiHKAI GWGCWC 2 cut(s) 24, 155
BsiHKCI CYCGRG 1 cut(s) 512
BsiSI CCGG 4 cut(s) 179, 239, 389, 483
BslFI GGGAC 1 cut(s) 207
BslI CCNNNNNNNGG 3 cut(s) 185, 200, 518
BsmFI GGGAC 1 cut(s) 207
BsnI GGCC 2 cut(s) 482, 727
BsoBI CYCGRG 1 cut(s) 512
Bsp1286I GDGCHC 2 cut(s) 24, 155
Bsp1407I TGTACA 1 cut(s) 683
Bsp143I GATC 4 cut(s) 640, 762, 844, 893
Bsp68I TCGCGA 1 cut(s) 69
BspACI CCGC 2 cut(s) 242, 254
BspANI GGCC 2 cut(s) 482, 727
BspCNI CTCAG 1 cut(s) 742
BspFNI CGCG 2 cut(s) 69, 260
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 4 cut(s) 222, 223, 309, 661
BspMAI CTGCAG 1 cut(s) 813
BspPI GGATC 1 cut(s) 839
BsrDI GCAATG 1 cut(s) 847
BsrFI RCCGGY 2 cut(s) 178, 238
BsrGI TGTACA 1 cut(s) 683
BsrI ACTGG 2 cut(s) 110, 874
BssAI RCCGGY 2 cut(s) 178, 238
BssECI CCNNGG 3 cut(s) 199, 303, 483
BssMI GATC 4 cut(s) 640, 762, 844, 893
Bst4CI ACNGT 2 cut(s) 683, 942
Bst6I CTCTTC 2 cut(s) 561, 600
BstAUI TGTACA 1 cut(s) 683
BstC8I GCNNGC 4 cut(s) 240, 258, 636, 792
BstDEI CTNAG 3 cut(s) 249, 460, 729
BstDSI CCRYGG 1 cut(s) 199
BstEII GGTNACC 1 cut(s) 188
BstF5I GGATG 2 cut(s) 527, 698
BstFNI CGCG 2 cut(s) 69, 260
BstKTI GATC 4 cut(s) 643, 765, 847, 896
BstMBI GATC 4 cut(s) 640, 762, 844, 893
BstMCI CGRYCG 1 cut(s) 284
BstMWI GCNNNNNNNGC 2 cut(s) 139, 635
BstPI GGTNACC 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 482
BstSFI CTRYAG 1 cut(s) 809
BstSLI GKGCMC 1 cut(s) 24
BstUI CGCG 2 cut(s) 69, 260
BstV1I GCAGC 4 cut(s) 145, 148, 151, 823
BsuRI GGCC 2 cut(s) 482, 727
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 2 cut(s) 527, 698
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 2 cut(s) 624, 881
BtuMI TCGCGA 1 cut(s) 69
Cac8I GCNNGC 4 cut(s) 240, 258, 636, 792
CciI TCATGA 1 cut(s) 165
Cfr10I RCCGGY 2 cut(s) 178, 238
Cfr13I GGNCC 3 cut(s) 221, 725, 866
Csp6I GTAC 2 cut(s) 684, 752
CspAI ACCGGT 1 cut(s) 178
CviAII CATG 5 cut(s) 166, 647, 766, 796, 849
CviQI GTAC 2 cut(s) 684, 752
DdeI CTNAG 3 cut(s) 249, 460, 729
DpnI GATC 4 cut(s) 642, 764, 846, 895
DpnII GATC 4 cut(s) 640, 762, 844, 893
DraIII CACNNNGTG 1 cut(s) 902
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 2 cut(s) 561, 600
EarI CTCTTC 2 cut(s) 561, 600
Eco47I GGWCC 2 cut(s) 221, 866
Eco57I CTGAAG 1 cut(s) 548
Eco88I CYCGRG 1 cut(s) 512
Eco91I GGTNACC 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 221
EcoO65I GGTNACC 1 cut(s) 188
EcoT22I ATGCAT 1 cut(s) 935
FaeI CATG 5 cut(s) 169, 650, 769, 799, 852
FalI AAGNNNNNCTT 2 cut(s) 892, 924
FaqI GGGAC 1 cut(s) 207
FatI CATG 5 cut(s) 165, 646, 765, 795, 848
FbaI TGATCA 1 cut(s) 762
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 6 cut(s) 134, 137, 140, 243, 254, 812
FokI GGATG 2 cut(s) 534, 705
Fsp4HI GCNGC 6 cut(s) 134, 137, 140, 243, 254, 812
FspBI CTAG 1 cut(s) 545
GluI GCNGC 6 cut(s) 134, 137, 140, 243, 254, 812
HaeIII GGCC 2 cut(s) 482, 727
HapII CCGG 4 cut(s) 179, 239, 389, 483
Hin1II CATG 5 cut(s) 169, 650, 769, 799, 852
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HinfI GANTC 7 cut(s) 59, 169, 262, 377, 449, 469, 782
HpaII CCGG 4 cut(s) 179, 239, 389, 483
HphI GGTGA 6 cut(s) 99, 107, 182, 284, 353, 632
Hpy166II GTNNAC 4 cut(s) 22, 115, 281, 490
Hpy188I TCNGA 4 cut(s) 174, 567, 732, 820
Hpy188III TCNNGA 7 cut(s) 68, 166, 314, 374, 466, 473, 830
Hpy8I GTNNAC 4 cut(s) 22, 115, 281, 490
Hpy99I CGWCG 2 cut(s) 13, 74
HpyAV CCTTC 2 cut(s) 332, 572
HpyCH4III ACNGT 2 cut(s) 683, 942
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 8 cut(s) 22, 323, 535, 629, 790, 811, 889, 933
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 635
HpyF3I CTNAG 3 cut(s) 249, 460, 729
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 5 cut(s) 169, 650, 769, 799, 852
KflI GGGWCCC 1 cut(s) 221
KroI GCCGGC 1 cut(s) 238
KroNI GCCGGC 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 762
Kzo9I GATC 4 cut(s) 640, 762, 844, 893
LmnI GCTCC 2 cut(s) 86, 313
Lsp1109I GCAGC 4 cut(s) 145, 148, 151, 823
MaeI CTAG 1 cut(s) 545
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 3 cut(s) 188, 620, 737
MalI GATC 4 cut(s) 642, 764, 846, 895
MboI GATC 4 cut(s) 640, 762, 844, 893
MboII GAAGA 4 cut(s) 372, 548, 587, 906
MhlI GDGCHC 2 cut(s) 24, 155
MluCI AATT 4 cut(s) 89, 227, 775, 833
MlyI GAGTC 2 cut(s) 53, 256
MmeI TCCRAC 1 cut(s) 798
Mph1103I ATGCAT 1 cut(s) 935
MreI CGCCGGCG 1 cut(s) 238
MroNI GCCGGC 1 cut(s) 238
MseI TTAA 1 cut(s) 606
MslI CAYNNNNRTG 2 cut(s) 648, 651
MspA1I CMGCKG 1 cut(s) 814
MspI CCGG 4 cut(s) 179, 239, 389, 483
MspR9I CCNGG 1 cut(s) 484
MvnI CGCG 2 cut(s) 69, 260
MwoI GCNNNNNNNGC 2 cut(s) 139, 635
NaeI GCCGGC 1 cut(s) 240
NciI CCSGG 1 cut(s) 484
NdeII GATC 4 cut(s) 640, 762, 844, 893
NgoMIV GCCGGC 1 cut(s) 238
NlaIII CATG 5 cut(s) 169, 650, 769, 799, 852
NlaIV GGNNCC 4 cut(s) 222, 223, 309, 661
NmuCI GTSAC 2 cut(s) 188, 620
NruI TCGCGA 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 935
PagI TCATGA 1 cut(s) 165
PdiI GCCGGC 1 cut(s) 240
PfeI GAWTC 5 cut(s) 169, 377, 449, 469, 782
PflFI GACNNNGTC 1 cut(s) 13
PinAI ACCGGT 1 cut(s) 178
PkrI GCNGC 6 cut(s) 135, 138, 141, 244, 255, 813
PleI GAGTC 2 cut(s) 53, 256
PpsI GAGTC 2 cut(s) 53, 256
PpuMI RGGWCCY 1 cut(s) 221
Psp5II RGGWCCY 1 cut(s) 221
PspEI GGTNACC 1 cut(s) 188
PspN4I GGNNCC 4 cut(s) 222, 223, 309, 661
PspPI GGNCC 3 cut(s) 221, 725, 866
PspPPI RGGWCCY 1 cut(s) 221
PstI CTGCAG 1 cut(s) 813
PsyI GACNNNGTC 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 814
RruI TCGCGA 1 cut(s) 69
RsaI GTAC 2 cut(s) 685, 753
RsaNI GTAC 2 cut(s) 684, 752
RseI CAYNNNNRTG 2 cut(s) 648, 651
SalI GTCGAC 1 cut(s) 279
SaqAI TTAA 1 cut(s) 606
SatI GCNGC 6 cut(s) 134, 137, 140, 243, 254, 812
Sau3AI GATC 4 cut(s) 640, 762, 844, 893
Sau96I GGNCC 3 cut(s) 221, 725, 866
SchI GAGTC 2 cut(s) 53, 256
ScrFI CCNGG 1 cut(s) 484
SduI GDGCHC 2 cut(s) 24, 155
SetI ASST 8 cut(s) 75, 144, 343, 423, 495, 636, 677, 816
SfcI CTRYAG 1 cut(s) 809
SgrAI CRCCGGYG 1 cut(s) 238
SinI GGWCC 2 cut(s) 221, 866
SmiMI CAYNNNNRTG 2 cut(s) 648, 651
Sse9I AATT 4 cut(s) 89, 227, 775, 833
SsiI CCGC 2 cut(s) 242, 254
SspI AATATT 4 cut(s) 54, 669, 745, 924
SspMI CTAG 1 cut(s) 545
StyD4I CCNGG 1 cut(s) 482
TaaI ACNGT 2 cut(s) 683, 942
TaiI ACGT 1 cut(s) 75
TaqI TCGA 2 cut(s) 280, 330
TaqII GACCGA 1 cut(s) 298
TasI AATT 4 cut(s) 89, 227, 775, 833
TatI WGTACW 1 cut(s) 683
TauI GCSGC 2 cut(s) 245, 256
TfiI GAWTC 5 cut(s) 169, 377, 449, 469, 782
Tru1I TTAA 1 cut(s) 606
Tru9I TTAA 1 cut(s) 606
TscAI CASTG 2 cut(s) 631, 881
TseFI GTSAC 2 cut(s) 188, 620
TseI GCWGC 4 cut(s) 133, 136, 139, 811
Tsp45I GTSAC 2 cut(s) 188, 620
TspDTI ATGAA 2 cut(s) 703, 812
TspGWI ACGGA 3 cut(s) 7, 188, 287
TspRI CASTG 2 cut(s) 631, 881
Tth111I GACNNNGTC 1 cut(s) 13
VneI GTGCAC 1 cut(s) 20
VpaK11BI GGWCC 2 cut(s) 221, 866
XapI RAATTY 2 cut(s) 227, 833
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 1 cut(s) 545
Zsp2I ATGCAT 1 cut(s) 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.