Prupe.1G066400_v2.0.a1

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000237
Physical Location & Seq
Forward (+)
4750422 .. 4751935
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G066400.1

Sequence Viewer

Length: 1218 bp
ATGCAGAGTCTCTGTCTCAAACCACCCAACATCTCCCCACCAGCAGAAACCATAGCCAGCAACCAGGATCTCCTAACACCGGTCCTTCTATGCATTCCAGCTCGTTCTCTACTTCGCTTCAAGTGCGTCTGCAAGAATTGGTTCGCTCTCATCTCCAACCGTAAATTTTGTGACATCCACACCTCCAAAAACCCGTACCCCAATGTCTCAGCCTTCTTCTTTCACACGGCAATACATGATTTCTACTTCATATCAATTCCGAACAATGAAAATCAATCTGGATCCCTCTTGAAACCTCCCAGGATCATCGAACACCCACCACGCATCAAGATTTTGCAATCCTGCAATGGCCTGCTCTTGTGCTGTTCCTTACAAGAAATTACGAACACAAGTAGTACCCCCAGATGTTATTTTGTTCTCAATCCCACAACCAACAAATTTTCAGCTATCACTAATTCACCATATGCCACTAAATCCACAAGCATTTTGGGGGATGCTTTGGCTTTTGACCCTTCCAAATCGCTTCATTACAAGGTCCTCTGCATTCGGTGCATTGCTGGATCTGTTATATCTTTCCAGATAGAGATTTATTCGTCTGAGACTCGGAATTGGACACTTCGTGAGTCCACCTTTCTTAGGCCATTCCATATAGACTTTAGCCACGGGGTGTACTTCAATGGCGCAATCAATTGGATTAGCCATACAAGTAGGGTGTTGCATTATAACATAGACGAAGAAAGTCATGGAATGGTGTCTAGGCCTCCGAGTTACAATGTTTTTCGCAAGAGGGAGTATAGATATTTTGGAGAGTCTCGTGGCCATTTGCACCTCATCGAAATTTATAGGCCTTGTGTTACTCAATTTGACGTGATGGAGATGGGGGGGGACTACTCTGGCTGGTTTGTCATGTACCACGTTGATCTTGATCCAATAGCCGCCGCATTTCCTGAGATGGTCCCGGAACATAATATTGTTGACCCTAGCAAGGAGGAAACTTGGTATTATGCATTTGTTGTTCTCTTTCTTGCTAGAGAAGTAAACAAAGAGGGTTCATCTCTGCTGTTGCATATTCCTTGTAAGGTCATCTCTTATAATCTGAGGGATAAGAGCTTTGAGAAAGCTTATGAGTTAACTTCCAAAGGCACTGAGAGTAAGAGATCATTGCAAGTTGGATGGCGAGATGCTTACCATTATATGGAGACTTTGGCTTGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

406

Amino Acids

46.46

Weight (kDa)

8.13

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 723, 1092
AccB7I CCANNNNNTGG 1 cut(s) 1195
AciI CCGC 2 cut(s) 936, 939
AclWI GGATC 6 cut(s) 75, 276, 289, 311, 568, 920
AcoI YGGCCR 1 cut(s) 817
AcsI RAATTY 3 cut(s) 164, 437, 837
AdeI CACNNNGTG 2 cut(s) 620, 667
AfaI GTAC 4 cut(s) 197, 397, 671, 911
AfiI CCNNNNNNNGG 4 cut(s) 79, 636, 985, 1195
AgeI ACCGGT 1 cut(s) 79
AgsI TTSAA 3 cut(s) 121, 292, 676
AjiI CACGTC 1 cut(s) 868
AjnI CCWGG 2 cut(s) 63, 299
AluBI AGCT 4 cut(s) 101, 446, 1110, 1121
AluI AGCT 4 cut(s) 101, 446, 1110, 1121
Alw26I GTCTC 6 cut(s) 14, 20, 211, 593, 816, 1193
AlwI GGATC 6 cut(s) 75, 276, 289, 311, 568, 920
AoxI GGCC 5 cut(s) 349, 638, 758, 817, 845
ApoI RAATTY 3 cut(s) 164, 437, 837
AsiGI ACCGGT 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 3 cut(s) 82, 535, 955
AsuC2I CCSGG 1 cut(s) 959
AsuHPI GGTGA 1 cut(s) 450
AvaII GGWCC 3 cut(s) 82, 535, 955
BalI TGGCCA 1 cut(s) 819
BamHI GGATCC 1 cut(s) 281
BauI CACGAG 1 cut(s) 813
BccI CCATC 4 cut(s) 865, 871, 946, 1167
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 2 cut(s) 65, 301
BcnI CCSGG 1 cut(s) 959
BcoDI GTCTC 6 cut(s) 14, 20, 211, 593, 816, 1193
BfaI CTAG 3 cut(s) 756, 981, 1029
BisI GCNGC 2 cut(s) 936, 939
BlsI GCNGC 2 cut(s) 937, 940
Bme1390I CCNGG 3 cut(s) 65, 301, 959
Bme18I GGWCC 3 cut(s) 82, 535, 955
BmgBI CACGTC 1 cut(s) 868
BmgT120I GGNCC 3 cut(s) 82, 535, 955
BmiI GGNNCC 2 cut(s) 283, 957
BmrFI CCNGG 3 cut(s) 65, 301, 959
BmsI GCATC 3 cut(s) 333, 484, 1171
BpuMI CCSGG 1 cut(s) 959
BsaBI GATNNNNATC 1 cut(s) 924
BsaJI CCNNGG 2 cut(s) 299, 661
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 636, 985, 1195
Bse118I RCCGGY 1 cut(s) 79
Bse3DI GCAATG 3 cut(s) 352, 552, 1160
Bse8I GATNNNNATC 1 cut(s) 924
BseBI CCWGG 2 cut(s) 65, 301
BseDI CCNNGG 2 cut(s) 299, 661
BseGI GGATG 3 cut(s) 174, 499, 1178
BseJI GATNNNNATC 1 cut(s) 924
BseLI CCNNNNNNNGG 4 cut(s) 79, 636, 985, 1195
BseMI GCAATG 3 cut(s) 352, 552, 1160
BseMII CTCAG 5 cut(s) 222, 588, 939, 1088, 1137
BshFI GGCC 5 cut(s) 351, 640, 760, 819, 847
BshTI ACCGGT 1 cut(s) 79
BsiSI CCGG 2 cut(s) 80, 959
BslFI GGGAC 2 cut(s) 899, 941
BslI CCNNNNNNNGG 4 cut(s) 79, 636, 985, 1195
BsmAI GTCTC 6 cut(s) 14, 20, 211, 593, 816, 1193
BsmFI GGGAC 2 cut(s) 899, 941
BsmI GAATGC 2 cut(s) 93, 543
BsnI GGCC 5 cut(s) 351, 640, 760, 819, 847
Bsp143I GATC 7 cut(s) 67, 281, 303, 560, 919, 925, 1157
BspACI CCGC 2 cut(s) 936, 939
BspANI GGCC 5 cut(s) 351, 640, 760, 819, 847
BspCNI CTCAG 5 cut(s) 221, 589, 940, 1089, 1138
BspLI GGNNCC 2 cut(s) 283, 957
BspPI GGATC 6 cut(s) 75, 276, 289, 311, 568, 920
BsrDI GCAATG 3 cut(s) 352, 552, 1160
BsrFI RCCGGY 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 299, 661
BssMI GATC 7 cut(s) 67, 281, 303, 560, 919, 925, 1157
BssSI CACGAG 1 cut(s) 813
Bst2BI CACGAG 1 cut(s) 813
Bst2UI CCWGG 2 cut(s) 65, 301
Bst4CI ACNGT 1 cut(s) 161
BstAPI GCANNNNNTGC 1 cut(s) 549
BstC8I GCNNGC 2 cut(s) 58, 353
BstDEI CTNAG 6 cut(s) 208, 597, 635, 948, 1097, 1146
BstDSI CCRYGG 1 cut(s) 661
BstENI CCTNNNNNAGG 1 cut(s) 634
BstF5I GGATG 3 cut(s) 174, 499, 1178
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 7 cut(s) 70, 284, 306, 563, 922, 928, 1160
BstMAI GTCTC 6 cut(s) 14, 20, 211, 593, 816, 1193
BstMBI GATC 7 cut(s) 67, 281, 303, 560, 919, 925, 1157
BstMWI GCNNNNNNNGC 2 cut(s) 123, 549
BstNI CCWGG 2 cut(s) 65, 301
BstSCI CCNGG 3 cut(s) 63, 299, 957
BstX2I RGATCY 3 cut(s) 67, 281, 560
BstYI RGATCY 3 cut(s) 67, 281, 560
BsuRI GGCC 5 cut(s) 351, 640, 760, 819, 847
BtgI CCRYGG 1 cut(s) 661
BtrI CACGTC 1 cut(s) 868
BtsCI GGATG 3 cut(s) 174, 499, 1178
BtsIMutI CAGTG 1 cut(s) 1143
Cac8I GCNNGC 2 cut(s) 58, 353
CfoI GCGC 1 cut(s) 683
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 3 cut(s) 82, 535, 955
CseI GACGC 1 cut(s) 115
Csp6I GTAC 4 cut(s) 196, 396, 670, 910
CspAI ACCGGT 1 cut(s) 79
CviAII CATG 3 cut(s) 236, 743, 907
CviQI GTAC 4 cut(s) 196, 396, 670, 910
DdeI CTNAG 6 cut(s) 208, 597, 635, 948, 1097, 1146
DpnI GATC 7 cut(s) 69, 283, 305, 562, 921, 927, 1159
DpnII GATC 7 cut(s) 67, 281, 303, 560, 919, 925, 1157
DraIII CACNNNGTG 2 cut(s) 620, 667
EaeI YGGCCR 1 cut(s) 817
Eco147I AGGCCT 2 cut(s) 760, 847
Eco47I GGWCC 3 cut(s) 82, 535, 955
EcoNI CCTNNNNNAGG 1 cut(s) 634
EcoO109I RGGNCCY 1 cut(s) 535
EcoRII CCWGG 2 cut(s) 63, 299
EcoT22I ATGCAT 2 cut(s) 95, 1009
FaeI CATG 3 cut(s) 239, 746, 910
FaqI GGGAC 2 cut(s) 899, 941
FatI CATG 3 cut(s) 235, 742, 906
FauNDI CATATG 1 cut(s) 463
Fnu4HI GCNGC 2 cut(s) 936, 939
FokI GGATG 3 cut(s) 161, 506, 1185
Fsp4HI GCNGC 2 cut(s) 936, 939
FspBI CTAG 3 cut(s) 756, 981, 1029
GlaI GCGC 1 cut(s) 682
GluI GCNGC 2 cut(s) 936, 939
HaeIII GGCC 5 cut(s) 351, 640, 760, 819, 847
HapII CCGG 2 cut(s) 80, 959
HgaI GACGC 1 cut(s) 115
HhaI GCGC 1 cut(s) 683
Hin1II CATG 3 cut(s) 239, 746, 910
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HincII GTYRAC 2 cut(s) 976, 1131
HindII GTYRAC 2 cut(s) 976, 1131
HindIII AAGCTT 1 cut(s) 1119
HinfI GANTC 4 cut(s) 7, 601, 623, 809
HpaI GTTAAC 1 cut(s) 1131
HpaII CCGG 2 cut(s) 80, 959
HphI GGTGA 1 cut(s) 450
Hpy166II GTNNAC 5 cut(s) 627, 670, 976, 1039, 1131
Hpy188I TCNGA 5 cut(s) 261, 598, 606, 765, 1098
Hpy188III TCNNGA 7 cut(s) 279, 289, 328, 577, 620, 923, 947
Hpy8I GTNNAC 5 cut(s) 627, 670, 976, 1039, 1131
HpyAV CCTTC 3 cut(s) 95, 223, 522
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 2 cut(s) 867, 915
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 549
HpyF3I CTNAG 6 cut(s) 208, 597, 635, 948, 1097, 1146
HpySE526I ACGT 2 cut(s) 867, 915
Hsp92II CATG 3 cut(s) 239, 746, 910
HspAI GCGC 1 cut(s) 681
KspAI GTTAAC 1 cut(s) 1131
Kzo9I GATC 7 cut(s) 67, 281, 303, 560, 919, 925, 1157
LweI GCATC 3 cut(s) 333, 484, 1171
MaeI CTAG 3 cut(s) 756, 981, 1029
MaeII ACGT 2 cut(s) 867, 915
MaeIII GTNAC 3 cut(s) 170, 767, 853
MalI GATC 7 cut(s) 69, 283, 305, 562, 921, 927, 1159
MboI GATC 7 cut(s) 67, 281, 303, 560, 919, 925, 1157
MboII GAAGA 2 cut(s) 208, 746
MfeI CAATTG 1 cut(s) 688
MflI RGATCY 3 cut(s) 67, 281, 560
MlsI TGGCCA 1 cut(s) 819
MluNI TGGCCA 1 cut(s) 819
MlyI GAGTC 4 cut(s) 16, 595, 632, 818
MmeI TCCRAC 2 cut(s) 180, 1150
Mox20I TGGCCA 1 cut(s) 819
Mph1103I ATGCAT 2 cut(s) 95, 1009
MroXI GAANNNNTTC 1 cut(s) 140
MscI TGGCCA 1 cut(s) 819
MseI TTAA 1 cut(s) 1130
Msp20I TGGCCA 1 cut(s) 819
MspI CCGG 2 cut(s) 80, 959
MspR9I CCNGG 3 cut(s) 65, 301, 959
MunI CAATTG 1 cut(s) 688
Mva1269I GAATGC 2 cut(s) 93, 543
MvaI CCWGG 2 cut(s) 65, 301
MwoI GCNNNNNNNGC 2 cut(s) 123, 549
NciI CCSGG 1 cut(s) 959
NdeI CATATG 1 cut(s) 463
NdeII GATC 7 cut(s) 67, 281, 303, 560, 919, 925, 1157
NlaIII CATG 3 cut(s) 239, 746, 910
NlaIV GGNNCC 2 cut(s) 283, 957
NmuCI GTSAC 1 cut(s) 170
NsiI ATGCAT 2 cut(s) 95, 1009
PceI AGGCCT 2 cut(s) 760, 847
PctI GAATGC 2 cut(s) 93, 543
PdmI GAANNNNTTC 1 cut(s) 140
PflMI CCANNNNNTGG 1 cut(s) 1195
PfoI TCCNGGA 1 cut(s) 957
PinAI ACCGGT 1 cut(s) 79
PkrI GCNGC 2 cut(s) 937, 940
PleI GAGTC 4 cut(s) 15, 595, 631, 817
PpsI GAGTC 4 cut(s) 15, 595, 631, 817
PpuMI RGGWCCY 1 cut(s) 535
PsiI TTATAA 2 cut(s) 723, 1092
Psp5II RGGWCCY 1 cut(s) 535
Psp6I CCWGG 2 cut(s) 63, 299
PspGI CCWGG 2 cut(s) 63, 299
PspN4I GGNNCC 2 cut(s) 283, 957
PspPI GGNCC 3 cut(s) 82, 535, 955
PspPPI RGGWCCY 1 cut(s) 535
PsuI RGATCY 3 cut(s) 67, 281, 560
RsaI GTAC 4 cut(s) 197, 397, 671, 911
RsaNI GTAC 4 cut(s) 196, 396, 670, 910
SaqAI TTAA 1 cut(s) 1130
SatI GCNGC 2 cut(s) 936, 939
Sau3AI GATC 7 cut(s) 67, 281, 303, 560, 919, 925, 1157
Sau96I GGNCC 3 cut(s) 82, 535, 955
SchI GAGTC 4 cut(s) 16, 595, 632, 818
ScrFI CCNGG 3 cut(s) 65, 301, 959
SfaNI GCATC 3 cut(s) 333, 484, 1171
SinI GGWCC 3 cut(s) 82, 535, 955
SseBI AGGCCT 2 cut(s) 760, 847
SsiI CCGC 2 cut(s) 936, 939
SspI AATATT 1 cut(s) 970
SspMI CTAG 3 cut(s) 756, 981, 1029
StuI AGGCCT 2 cut(s) 760, 847
StyD4I CCNGG 3 cut(s) 63, 299, 957
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 2 cut(s) 870, 918
TaqI TCGA 2 cut(s) 309, 834
TatI WGTACW 1 cut(s) 669
TauI GCSGC 2 cut(s) 938, 941
Tru1I TTAA 1 cut(s) 1130
Tru9I TTAA 1 cut(s) 1130
TscAI CASTG 1 cut(s) 1150
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 4 cut(s) 238, 282, 515, 1041
TspRI CASTG 1 cut(s) 1150
Van91I CCANNNNNTGG 1 cut(s) 1195
VpaK11BI GGWCC 3 cut(s) 82, 535, 955
XagI CCTNNNNNAGG 1 cut(s) 634
XapI RAATTY 3 cut(s) 164, 437, 837
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 3 cut(s) 756, 981, 1029
Zsp2I ATGCAT 2 cut(s) 95, 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.