Rorug02G0577700

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000237
Physical Location & Seq
Reverse (-)
70152828 .. 70156494
3667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0577700.1

Sequence Viewer

Length: 618 bp
ATGTGCATGGATAATTCATGGGATACTCTTTCAGTGTCTGTTCTATCACAGAACTGCCCTGAAACATTTTATGAACCAGAACACTCTGCTTATCTGGTGGAACTCTGTTTGGCGTACCTCTACAAAGTGTTTCAAGGTACCAATGCCATATCTCTGGATAACTCCTTGGAGGATTTGATATCCTCAATATTTGTCACAGCAAAATCCATTGTGAACTGTTTTCAACCAAAGGAAGTCAATAAATTTAGGAGCACTGCTGTAAGACTTGTTTCTCATCTTGCTCAAGTTCCTTCCTCAGCAGTTTACTTTAAGGATGTGTCGCTGTCTATGCCTCTCACTCACCGACAGCAATTTCAGGACTGGCGGTTAAAACATCCTGTTAGCTACAGGGCAGAAAAGTATCGTGTCCTAGAACGAGACTTGTTAGATAGAAGAGCTAAATTGGAGGCAAACTACCAAAATTGTTTCCGGGATCTGTACAGGGAGAGGTTTGGGATTGTGAATGGTGTAACTGAAGTTGGAGAACCAAACACTAAAGGAGTGCCGGAGTTTTGGCTTAAAGCAATGACGGTTATTCGGATGAGTCTGAGTCCCGAGGAAGAGGAAGAGGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

205

Amino Acids

23.78

Weight (kDa)

5.36

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 132 - 194 3.5e-06 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 137
AciI CCGC 1 cut(s) 364
AclWI GGATC 1 cut(s) 480
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 534
AfaI GTAC 3 cut(s) 116, 139, 479
AgsI TTSAA 2 cut(s) 134, 224
AluBI AGCT 2 cut(s) 384, 437
AluI AGCT 2 cut(s) 384, 437
Alw21I GWGCWC 1 cut(s) 254
Alw26I GTCTC 1 cut(s) 411
AlwI GGATC 1 cut(s) 480
AlwNI CAGNNNCTG 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 593
ApoI RAATTY 1 cut(s) 242
Asp718I GGTACC 1 cut(s) 137
AsuC2I CCSGG 1 cut(s) 470
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 593
BanI GGYRCC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 254
BbvCI CCTCAGC 1 cut(s) 295
BciVI GTATCC 1 cut(s) 16
BcnI CCSGG 1 cut(s) 470
BcoDI GTCTC 1 cut(s) 411
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 385
BfuI GTATCC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 470
BmeT110I CYCGRG 1 cut(s) 593
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 470
Bpu10I CCTNAGC 1 cut(s) 295
BpuEI CTTGAG 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 470
BsaJI CCNNGG 2 cut(s) 165, 594
Bse1I ACTGG 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 570
BseDI CCNNGG 2 cut(s) 165, 594
BseGI GGATG 3 cut(s) 319, 373, 585
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 2 cut(s) 309, 578
BseNI ACTGG 1 cut(s) 365
BshNI GGYRCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 593
BsiSI CCGG 2 cut(s) 469, 545
BslFI GGGAC 1 cut(s) 576
BsmAI GTCTC 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 576
BsoBI CYCGRG 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 254
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 1 cut(s) 472
BspACI CCGC 1 cut(s) 364
BspCNI CTCAG 2 cut(s) 308, 579
BspLI GGNNCC 1 cut(s) 139
BspPI GGATC 1 cut(s) 480
BspQI GCTCTTC 1 cut(s) 427
BspT107I GGYRCC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 570
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 2 cut(s) 165, 594
BssMI GATC 1 cut(s) 472
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 218, 571
Bst6I CTCTTC 4 cut(s) 427, 594, 600, 606
BstAUI TGTACA 1 cut(s) 477
BstDEI CTNAG 2 cut(s) 295, 587
BstF5I GGATG 3 cut(s) 319, 373, 585
BstKTI GATC 1 cut(s) 475
BstMAI GTCTC 1 cut(s) 411
BstMBI GATC 1 cut(s) 472
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 468
BstSFI CTRYAG 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 154
BstYI RGATCY 1 cut(s) 472
BsuI GTATCC 1 cut(s) 16
BtsCI GGATG 3 cut(s) 319, 373, 585
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 39, 252
CaiI CAGNNNCTG 1 cut(s) 38
Csp6I GTAC 3 cut(s) 115, 138, 478
CviAII CATG 2 cut(s) 7, 18
CviJI RGCY 3 cut(s) 384, 437, 556
CviKI_1 RGCY 3 cut(s) 384, 437, 556
CviQI GTAC 3 cut(s) 115, 138, 478
DdeI CTNAG 2 cut(s) 295, 587
DpnI GATC 1 cut(s) 474
DpnII GATC 1 cut(s) 472
Eam1104I CTCTTC 4 cut(s) 427, 594, 600, 606
EarI CTCTTC 4 cut(s) 427, 594, 600, 606
Eco130I CCWWGG 1 cut(s) 165
Eco32I GATATC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 534
Eco88I CYCGRG 1 cut(s) 593
EcoRV GATATC 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 10, 21
FaiI YATR 5 cut(s) 8, 19, 72, 149, 329
FaqI GGGAC 1 cut(s) 576
FatI CATG 2 cut(s) 6, 17
FokI GGATG 3 cut(s) 326, 360, 592
FspBI CTAG 1 cut(s) 410
HapII CCGG 2 cut(s) 469, 545
Hin1II CATG 2 cut(s) 10, 21
HinfI GANTC 2 cut(s) 583, 589
HpaII CCGG 2 cut(s) 469, 545
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 214, 304
Hpy188I TCNGA 2 cut(s) 579, 588
Hpy188III TCNNGA 3 cut(s) 155, 356, 593
Hpy8I GTNNAC 2 cut(s) 214, 304
HpyAV CCTTC 1 cut(s) 300
HpyCH4III ACNGT 2 cut(s) 218, 571
HpyCH4V TGCA 1 cut(s) 6
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
HpyF3I CTNAG 2 cut(s) 295, 587
Hsp92II CATG 2 cut(s) 10, 21
KpnI GGTACC 1 cut(s) 141
Kzo9I GATC 1 cut(s) 472
LguI GCTCTTC 1 cut(s) 427
LmnI GCTCC 1 cut(s) 249
MaeI CTAG 1 cut(s) 410
MaeIII GTNAC 2 cut(s) 193, 508
MalI GATC 1 cut(s) 474
MboI GATC 1 cut(s) 472
MboII GAAGA 3 cut(s) 444, 611, 617
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 5 cut(s) 13, 242, 350, 440, 460
MlyI GAGTC 2 cut(s) 592, 598
MmeI TCCRAC 1 cut(s) 499
MseI TTAA 3 cut(s) 309, 368, 558
MspI CCGG 2 cut(s) 469, 545
MspR9I CCNGG 1 cut(s) 470
MwoI GCNNNNNNNGC 1 cut(s) 328
NciI CCSGG 1 cut(s) 470
NdeII GATC 1 cut(s) 472
NlaIII CATG 2 cut(s) 10, 21
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 193
PciSI GCTCTTC 1 cut(s) 427
PfoI TCCNGGA 1 cut(s) 468
PleI GAGTC 2 cut(s) 591, 597
PpsI GAGTC 2 cut(s) 591, 597
PspN4I GGNNCC 1 cut(s) 139
PstNI CAGNNNCTG 1 cut(s) 38
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 3 cut(s) 116, 139, 479
RsaNI GTAC 3 cut(s) 115, 138, 478
SapI GCTCTTC 1 cut(s) 427
SaqAI TTAA 3 cut(s) 309, 368, 558
Sau3AI GATC 1 cut(s) 472
SchI GAGTC 2 cut(s) 592, 598
ScrFI CCNGG 1 cut(s) 470
SduI GDGCHC 1 cut(s) 254
SetI ASST 5 cut(s) 120, 139, 386, 439, 491
SfcI CTRYAG 1 cut(s) 385
SmlI CTYRAG 1 cut(s) 282
SmoI CTYRAG 1 cut(s) 282
Sse9I AATT 5 cut(s) 13, 242, 350, 440, 460
SsiI CCGC 1 cut(s) 364
SspI AATATT 1 cut(s) 189
SspMI CTAG 1 cut(s) 410
StyD4I CCNGG 1 cut(s) 468
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 218, 571
TasI AATT 5 cut(s) 13, 242, 350, 440, 460
TatI WGTACW 1 cut(s) 477
Tru1I TTAA 3 cut(s) 309, 368, 558
Tru9I TTAA 3 cut(s) 309, 368, 558
TscAI CASTG 2 cut(s) 39, 259
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 2 cut(s) 6, 87
TspRI CASTG 2 cut(s) 39, 259
XapI RAATTY 1 cut(s) 242
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.