Rroxscaffold_1G00021050

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000237
Physical Location & Seq
Reverse (-)
25726430 .. 25729669
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021050.1

Sequence Viewer

Length: 1149 bp
ATGCAGAGTAGCATAGCAGCAGCAGAAACAGTTGGTGACAACGAAGACCTCCTCAAACAGCTTCTCCTGCGCTTACCAGCTAAATCACTCATCCGCTTCAAATGCGTCTCTAAGCTTTGGCTCTCTCTCATATCCAACCCCAACTTCTGCGACTCCCACACCCTCCGAAACCCAATCCCTAAATTCCCCTCAGCCTTCTTCTTGAGCAGAACCGCCACAACAGACCCCCAATTCTTCTCCCTCCTTCCAAACACCAATCCAAACCCATCCAAACCTCTCAATTTCATCCCGGACCCACAAGGCCTCCAGATTCTTCAGTCCTGCAATGGCTTGCTCTTGTGTTGTTCCTCCACAGATGAATTCACAATCCCCTGCAAATTCTATGTAGTTAATCCCACAACTAGCCGATTCTCGGAAATAGCTCTCCCACCTCCCTCTCCTAAACCCGTACCCACAAGGCTCTTGAGTGTTGCTTTGGCTTTTGATCCTTCCAAATCACTTCATTATAATGTGGTTTGCGTTTCGGGCTCCGGTACCATTCCTTCATTTTGTCTGGAGATTGGGATTGAGATATATTCGTCTCGTACTCGAACCTGGAGGGCTGGTGAGTCTACTCATATGTGGTTTCCATCAATTGGTAAGTTCCTACCCGGTGTATACTGCAATGGGAGGATTCATTGGCTCAGCACGTTTTGTTGGTTGGTACACTATGACATAGATGAAGGGCATTATGGAGTGGTGGATGAGCTGGGTGCTTCCCGTTTTTCGGTGGAGAAGGAATACATGTGTTTTGGGGAGTCTGGTGGCCGTTTGCATCTGATTGAAATGTATGGGAGTGGTCTAAACAAGCTTCGTGTGCTGGAGATGGGGAAGGACTACTCTGGCTGGTTTGTCAAGTACCGGGTTGATCTTAATCTCATGACTCCCTACTTTACTTATACTCCTCCTGCATCCTGTCGTCCATTTTTCTTTCTTGATGCAGAGGAAAACGAGGAACAGAATCCAGTTCTTGTGCTGCGCATAGGTTATAAGTTCATCTCGTATAACATCAGGGATAAGAGCTGTAAGGCACTCTGTGATTTGTTCATACCTTCGCTGGTTGGATGGAGAGATGCCTATCAATATATGGAGACTTTGGCTAGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

382

Amino Acids

43.14

Weight (kDa)

7.0

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 50 8.7e-07 F-box domain
FBA_1 PF07734 105 - 229 7.2e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 507, 1029
Acc16I TGCGCA 1 cut(s) 1019
Acc65I GGTACC 1 cut(s) 533
AccB1I GGYRCC 1 cut(s) 533
AccB7I CCANNNNNTGG 1 cut(s) 635
AccI GTMKAC 2 cut(s) 611, 657
AciI CCGC 2 cut(s) 94, 213
AclWI GGATC 1 cut(s) 479
AcoI YGGCCR 1 cut(s) 805
AcsI RAATTY 3 cut(s) 182, 359, 377
AcuI CTGAAG 1 cut(s) 299
AdeI CACNNNGTG 1 cut(s) 1076
AfaI GTAC 5 cut(s) 450, 535, 586, 705, 899
AfiI CCNNNNNNNGG 3 cut(s) 412, 635, 766
AflIII ACRYGT 1 cut(s) 783
AgsI TTSAA 2 cut(s) 100, 824
AjnI CCWGG 1 cut(s) 593
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 7 cut(s) 61, 80, 115, 422, 748, 850, 1062
AluI AGCT 7 cut(s) 61, 80, 115, 422, 748, 850, 1062
Alw26I GTCTC 3 cut(s) 112, 585, 1124
AlwI GGATC 1 cut(s) 479
AoxI GGCC 2 cut(s) 301, 805
ApeKI GCWGC 3 cut(s) 17, 20, 1015
ApoI RAATTY 3 cut(s) 182, 359, 377
Asp718I GGTACC 1 cut(s) 533
AspLEI GCGC 2 cut(s) 72, 1020
AspS9I GGNCC 1 cut(s) 292
AsuC2I CCSGG 3 cut(s) 290, 651, 902
AsuHPI GGTGA 2 cut(s) 47, 617
AvaII GGWCC 1 cut(s) 292
BanI GGYRCC 1 cut(s) 533
BanII GRGCYC 1 cut(s) 530
BarI GAAGNNNNNNTAC 2 cut(s) 526, 558
BbsI GAAGAC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 190
BbvI GCAGC 3 cut(s) 29, 32, 1002
BccI CCATC 4 cut(s) 274, 637, 859, 1098
BceAI ACGGC 1 cut(s) 792
BciT130I CCWGG 1 cut(s) 595
BcnI CCSGG 3 cut(s) 290, 651, 902
BcoDI GTCTC 3 cut(s) 112, 585, 1124
BfaI CTAG 2 cut(s) 402, 1140
BisI GCNGC 3 cut(s) 18, 21, 1016
BlpI GCTNAGC 1 cut(s) 683
BlsI GCNGC 3 cut(s) 19, 22, 1017
Bme1390I CCNGG 4 cut(s) 290, 595, 651, 902
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 3 cut(s) 294, 529, 535
BmrFI CCNGG 4 cut(s) 290, 595, 651, 902
BmsI GCATC 4 cut(s) 823, 959, 967, 1102
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 4 cut(s) 290, 575, 616, 881
Bpu10I CCTNAGC 1 cut(s) 190
Bpu1102I GCTNAGC 1 cut(s) 683
BpuEI CTTGAG 2 cut(s) 223, 484
BpuMI CCSGG 3 cut(s) 290, 651, 902
BsaBI GATNNNNATC 2 cut(s) 912, 1116
BsaWI WCCGGW 1 cut(s) 530
BsaXI ACNNNNNCTCC 8 cut(s) 48, 78, 288, 318, 589, 619, 925, 955
Bsc4I CCNNNNNNNGG 3 cut(s) 412, 635, 766
Bse1I ACTGG 1 cut(s) 1004
Bse3DI GCAATG 2 cut(s) 331, 670
Bse8I GATNNNNATC 2 cut(s) 912, 1116
BseBI CCWGG 1 cut(s) 595
BseGI GGATG 6 cut(s) 90, 266, 285, 748, 950, 1109
BseJI GATNNNNATC 2 cut(s) 912, 1116
BseLI CCNNNNNNNGG 3 cut(s) 412, 635, 766
BseMI GCAATG 2 cut(s) 331, 670
BseMII CTCAG 2 cut(s) 204, 697
BseNI ACTGG 1 cut(s) 1004
BseRI GAGGAG 2 cut(s) 41, 933
BseXI GCAGC 3 cut(s) 29, 32, 1002
BseYI CCCAGC 1 cut(s) 748
BshFI GGCC 2 cut(s) 303, 807
BshNI GGYRCC 1 cut(s) 533
BsiSI CCGG 4 cut(s) 290, 531, 651, 901
BslI CCNNNNNNNGG 3 cut(s) 412, 635, 766
BsmAI GTCTC 3 cut(s) 112, 585, 1124
BsmBI CGTCTC 2 cut(s) 112, 585
BsnI GGCC 2 cut(s) 303, 807
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 2 cut(s) 484, 907
Bsp1720I GCTNAGC 1 cut(s) 683
BspACI CCGC 2 cut(s) 94, 213
BspANI GGCC 2 cut(s) 303, 807
BspCNI CTCAG 2 cut(s) 203, 696
BspHI TCATGA 1 cut(s) 918
BspLI GGNNCC 3 cut(s) 294, 529, 535
BspPI GGATC 1 cut(s) 479
BspT107I GGYRCC 1 cut(s) 533
BsrDI GCAATG 2 cut(s) 331, 670
BsrI ACTGG 1 cut(s) 1004
BssMI GATC 2 cut(s) 484, 907
BssNAI GTATAC 1 cut(s) 658
Bst1107I GTATAC 1 cut(s) 658
Bst2UI CCWGG 1 cut(s) 595
Bst4CI ACNGT 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 3 cut(s) 111, 190, 683
BstF5I GGATG 6 cut(s) 90, 266, 285, 748, 950, 1109
BstHHI GCGC 2 cut(s) 72, 1020
BstKTI GATC 2 cut(s) 487, 910
BstMAI GTCTC 3 cut(s) 112, 585, 1124
BstMBI GATC 2 cut(s) 484, 907
BstMWI GCNNNNNNNGC 4 cut(s) 67, 102, 525, 856
BstNI CCWGG 1 cut(s) 595
BstNSI RCATGY 1 cut(s) 787
BstSCI CCNGG 4 cut(s) 288, 593, 649, 900
BstV1I GCAGC 3 cut(s) 29, 32, 1002
BstV2I GAAGAC 1 cut(s) 51
BstZ17I GTATAC 1 cut(s) 658
BsuRI GGCC 2 cut(s) 303, 807
BtsCI GGATG 6 cut(s) 90, 266, 285, 748, 950, 1109
Cac8I GCNNGC 1 cut(s) 332
CciI TCATGA 1 cut(s) 918
CfoI GCGC 2 cut(s) 72, 1020
Cfr13I GGNCC 1 cut(s) 292
CseI GACGC 1 cut(s) 94
Csp6I GTAC 5 cut(s) 449, 534, 585, 704, 898
CviAII CATG 2 cut(s) 784, 919
CviQI GTAC 5 cut(s) 449, 534, 585, 704, 898
DdeI CTNAG 3 cut(s) 111, 190, 683
DpnI GATC 2 cut(s) 486, 909
DpnII GATC 2 cut(s) 484, 907
DraIII CACNNNGTG 1 cut(s) 1076
EaeI YGGCCR 1 cut(s) 805
Eco147I AGGCCT 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 530
Eco47I GGWCC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 299
EcoRI GAATTC 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 593
EcoT38I GRGCYC 1 cut(s) 530
Esp3I CGTCTC 2 cut(s) 112, 585
FaeI CATG 2 cut(s) 787, 922
FatI CATG 2 cut(s) 783, 918
FauNDI CATATG 1 cut(s) 618
FblI GTMKAC 2 cut(s) 611, 657
Fnu4HI GCNGC 3 cut(s) 18, 21, 1016
FokI GGATG 6 cut(s) 77, 253, 272, 755, 937, 1116
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 3 cut(s) 18, 21, 1016
FspBI CTAG 2 cut(s) 402, 1140
FspI TGCGCA 1 cut(s) 1019
GlaI GCGC 2 cut(s) 71, 1019
GluI GCNGC 3 cut(s) 18, 21, 1016
GsaI CCCAGC 1 cut(s) 752
GsuI CTGGAG 4 cut(s) 290, 575, 616, 881
HaeIII GGCC 2 cut(s) 303, 807
HapII CCGG 4 cut(s) 290, 531, 651, 901
HgaI GACGC 1 cut(s) 94
HhaI GCGC 2 cut(s) 72, 1020
Hin1II CATG 2 cut(s) 787, 922
Hin6I GCGC 2 cut(s) 70, 1018
HinP1I GCGC 2 cut(s) 70, 1018
HindIII AAGCTT 2 cut(s) 113, 848
HinfI GANTC 8 cut(s) 152, 310, 408, 608, 673, 797, 922, 1000
HpaII CCGG 4 cut(s) 290, 531, 651, 901
HphI GGTGA 2 cut(s) 47, 617
Hpy166II GTNNAC 3 cut(s) 612, 658, 706
Hpy188I TCNGA 3 cut(s) 167, 415, 819
Hpy188III TCNNGA 6 cut(s) 202, 307, 463, 554, 919, 974
Hpy8I GTNNAC 3 cut(s) 612, 658, 706
HpyAV CCTTC 8 cut(s) 205, 254, 498, 552, 716, 769, 865, 1101
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 689
HpyCH4V TGCA 7 cut(s) 4, 324, 375, 663, 814, 950, 980
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 102, 525, 856
HpyF3I CTNAG 3 cut(s) 111, 190, 683
HpySE526I ACGT 1 cut(s) 689
Hsp92II CATG 2 cut(s) 787, 922
HspAI GCGC 2 cut(s) 70, 1018
KpnI GGTACC 1 cut(s) 537
Kzo9I GATC 2 cut(s) 484, 907
LmnI GCTCC 1 cut(s) 533
Lsp1109I GCAGC 3 cut(s) 29, 32, 1002
LweI GCATC 4 cut(s) 823, 959, 967, 1102
MaeI CTAG 2 cut(s) 402, 1140
MaeII ACGT 1 cut(s) 689
MaeIII GTNAC 1 cut(s) 35
MalI GATC 2 cut(s) 486, 909
MboI GATC 2 cut(s) 484, 907
MboII GAAGA 4 cut(s) 56, 190, 226, 305
MfeI CAATTG 1 cut(s) 633
MhlI GDGCHC 1 cut(s) 530
MluCI AATT 6 cut(s) 182, 230, 280, 359, 377, 633
MlyI GAGTC 4 cut(s) 146, 617, 806, 916
MmeI TCCRAC 2 cut(s) 159, 1081
MseI TTAA 2 cut(s) 390, 912
MslI CAYNNNNRTG 1 cut(s) 507
MspI CCGG 4 cut(s) 290, 531, 651, 901
MspR9I CCNGG 4 cut(s) 290, 595, 651, 902
MunI CAATTG 1 cut(s) 633
MvaI CCWGG 1 cut(s) 595
MwoI GCNNNNNNNGC 4 cut(s) 67, 102, 525, 856
NciI CCSGG 3 cut(s) 290, 651, 902
NdeI CATATG 1 cut(s) 618
NdeII GATC 2 cut(s) 484, 907
NlaIII CATG 2 cut(s) 787, 922
NlaIV GGNNCC 3 cut(s) 294, 529, 535
NmuCI GTSAC 1 cut(s) 35
NsbI TGCGCA 1 cut(s) 1019
NspI RCATGY 1 cut(s) 787
PagI TCATGA 1 cut(s) 918
PceI AGGCCT 1 cut(s) 303
PciI ACATGT 1 cut(s) 783
PfeI GAWTC 4 cut(s) 310, 408, 673, 1000
PflMI CCANNNNNTGG 1 cut(s) 635
PfoI TCCNGGA 1 cut(s) 288
PkrI GCNGC 3 cut(s) 19, 22, 1017
PleI GAGTC 4 cut(s) 146, 616, 805, 916
PpsI GAGTC 4 cut(s) 146, 616, 805, 916
PscI ACATGT 1 cut(s) 783
PsiI TTATAA 2 cut(s) 507, 1029
Psp6I CCWGG 1 cut(s) 593
PspFI CCCAGC 1 cut(s) 748
PspGI CCWGG 1 cut(s) 593
PspN4I GGNNCC 3 cut(s) 294, 529, 535
PspPI GGNCC 1 cut(s) 292
RsaI GTAC 5 cut(s) 450, 535, 586, 705, 899
RsaNI GTAC 5 cut(s) 449, 534, 585, 704, 898
RseI CAYNNNNRTG 1 cut(s) 507
SaqAI TTAA 2 cut(s) 390, 912
SatI GCNGC 3 cut(s) 18, 21, 1016
Sau3AI GATC 2 cut(s) 484, 907
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 4 cut(s) 146, 617, 806, 916
ScrFI CCNGG 4 cut(s) 290, 595, 651, 902
SduI GDGCHC 1 cut(s) 530
SfaNI GCATC 4 cut(s) 823, 959, 967, 1102
SinI GGWCC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 2 cut(s) 202, 463
SmoI CTYRAG 2 cut(s) 202, 463
Sse9I AATT 6 cut(s) 182, 230, 280, 359, 377, 633
SseBI AGGCCT 1 cut(s) 303
SsiI CCGC 2 cut(s) 94, 213
SspMI CTAG 2 cut(s) 402, 1140
StuI AGGCCT 1 cut(s) 303
StyD4I CCNGG 4 cut(s) 288, 593, 649, 900
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 692
TaqI TCGA 1 cut(s) 589
TasI AATT 6 cut(s) 182, 230, 280, 359, 377, 633
TfiI GAWTC 4 cut(s) 310, 408, 673, 1000
Tru1I TTAA 2 cut(s) 390, 912
Tru9I TTAA 2 cut(s) 390, 912
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 3 cut(s) 17, 20, 1015
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 8 cut(s) 274, 372, 491, 534, 665, 735, 1024, 1075
Van91I CCANNNNNTGG 1 cut(s) 635
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 3 cut(s) 182, 359, 377
XceI RCATGY 1 cut(s) 787
XmiI GTMKAC 2 cut(s) 611, 657
XspI CTAG 2 cut(s) 402, 1140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.