RchiOBHm_Chr6g0264241

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000237
Physical Location & Seq
Reverse (-)
19425328 .. 19426167
840 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23698

Sequence Viewer

Length: 840 bp
ATGGTGCAGGAAGTCGGCACCATAGCCAGCACAGAAGACCTTCTTATTCAAATTCTTTTGCGCGTACCAGCTCGACCTCTGGTCCGATTCAAATGCGTCTCCAAGCATTGGCTCTCTCTTATCTCCGACCCCAAATTCTGTCACCGCCACACCCTTCAGAACCCCAACTCCTCCATCTCCGCTGTCTTTCCTAGGACATCAGCATACATTGCCTTATCTTTCATCCCTCTTGATCTTGATCATGACCTTAGAAGTAGCCATGGAAACCAAAATCTATCTGGTTCACCCAACTGCAATCCTCTTAACTTCGTTCAAAATCATGAGATCATGATTATCCAGTCCTGTAATGGCCTCTTCTTATGTTGTCCCCTCGCAAAAAGAAGTAAGCCACCATACTATGTTCTCAATCCGACTACCAACCAGTTTTCCACACTTAATCCTCCAGCTGCTGCTGCTACTTCTGGTCAACCATGTTTGATCCTCGGTCAGGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGTGCTCTTCCTTTGCAGAGAGAACTATTACTCGGATTTTCACATAGAGATATATTCGTCTGAGACTCAAAGTTGGAGACTTGTCGATTCCTCTTTCAATATGGCACGTCAGGGTGTCCGCTACGATGAAGGGGTATACTGCAATGGCGCAGTTCATTGGGTAGGGTTGCATAAAGAGCTCTCGTACTATCACATAGATGATGAGCGTGTCAGACATGTTTTCGAGCCTGACAGACATGTTTTTAGTCTTGGTCTCGAGCCATTCGAATGGTTTGAGTTTAGAACATTGTGGCGGCCATTTGCATCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

279

Amino Acids

31.97

Weight (kDa)

6.88

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 48 2e-07 F-box domain
FBA_1 PF07734 94 - 234 1.1e-14 F-box associated beta propeller domain
FBA_3 PF08268 95 - 232 1.1e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AccB7I CCANNNNNTGG 1 cut(s) 108
AccI GTMKAC 1 cut(s) 663
AccII CGCG 1 cut(s) 63
AciI CCGC 4 cut(s) 145, 180, 646, 820
AclWI GGATC 1 cut(s) 472
AcoI YGGCCR 1 cut(s) 821
AcsI RAATTY 2 cut(s) 51, 134
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 2 cut(s) 66, 713
AfiI CCNNNNNNNGG 2 cut(s) 108, 487
AflIII ACRYGT 2 cut(s) 742, 763
AgsI TTSAA 4 cut(s) 50, 91, 314, 625
AhdI GACNNNNNGTC 1 cut(s) 80
AjiI CACGTC 1 cut(s) 635
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 3 cut(s) 71, 446, 706
AluI AGCT 3 cut(s) 71, 446, 706
Alw21I GWGCWC 2 cut(s) 534, 708
Alw26I GTCTC 4 cut(s) 103, 584, 598, 785
AlwI GGATC 1 cut(s) 472
AlwNI CAGNNNCTG 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 782
AoxI GGCC 2 cut(s) 349, 821
ApeKI GCWGC 3 cut(s) 446, 449, 452
ApoI RAATTY 2 cut(s) 51, 134
Asp700I GAANNNNTTC 1 cut(s) 39
AspA2I CCTAGG 1 cut(s) 191
AspLEI GCGC 2 cut(s) 63, 677
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 3 cut(s) 134, 276, 507
AsuII TTCGAA 1 cut(s) 792
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 1 cut(s) 82
AvrII CCTAGG 1 cut(s) 191
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 708
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 2 cut(s) 534, 708
BbvI GCAGC 3 cut(s) 433, 436, 439
BccI CCATC 1 cut(s) 182
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 4 cut(s) 103, 584, 598, 785
BfaI CTAG 1 cut(s) 192
BisI GCNGC 4 cut(s) 447, 450, 453, 821
BlnI CCTAGG 1 cut(s) 191
BlsI GCNGC 4 cut(s) 448, 451, 454, 822
Bme18I GGWCC 1 cut(s) 82
BmeRI GACNNNNNGTC 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 782
BmgBI CACGTC 1 cut(s) 635
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 426
Bpu14I TTCGAA 1 cut(s) 792
BsaBI GATNNNNATC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 785
BsaJI CCNNGG 3 cut(s) 191, 259, 481
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 487
Bse1I ACTGG 2 cut(s) 337, 421
Bse3DI GCAATG 2 cut(s) 207, 676
Bse8I GATNNNNATC 1 cut(s) 237
BseDI CCNNGG 3 cut(s) 191, 259, 481
BseGI GGATG 1 cut(s) 222
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 108, 487
BseMI GCAATG 2 cut(s) 207, 676
BseMII CTCAG 1 cut(s) 579
BseNI ACTGG 2 cut(s) 337, 421
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 3 cut(s) 433, 436, 439
BsgI GTGCAG 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 2 cut(s) 351, 823
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 2 cut(s) 534, 708
BsiHKCI CYCGRG 1 cut(s) 782
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 108, 487
BsmAI GTCTC 4 cut(s) 103, 584, 598, 785
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 2 cut(s) 351, 823
Bso31I GGTCTC 1 cut(s) 785
BsoBI CYCGRG 1 cut(s) 782
Bsp119I TTCGAA 1 cut(s) 792
Bsp1286I GDGCHC 2 cut(s) 534, 708
Bsp143I GATC 4 cut(s) 232, 238, 324, 477
Bsp19I CCATGG 1 cut(s) 259
BspACI CCGC 4 cut(s) 145, 180, 646, 820
BspANI GGCC 2 cut(s) 351, 823
BspCNI CTCAG 1 cut(s) 580
BspFNI CGCG 1 cut(s) 63
BspHI TCATGA 3 cut(s) 241, 319, 327
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 472
BspQI GCTCTTC 1 cut(s) 539
BspT104I TTCGAA 1 cut(s) 792
BspT107I GGYRCC 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 785
BsrDI GCAATG 2 cut(s) 207, 676
BsrI ACTGG 2 cut(s) 337, 421
BssECI CCNNGG 3 cut(s) 191, 259, 481
BssMI GATC 4 cut(s) 232, 238, 324, 477
BssNAI GTATAC 1 cut(s) 664
BssT1I CCWWGG 2 cut(s) 191, 259
Bst1107I GTATAC 1 cut(s) 664
Bst6I CTCTTC 2 cut(s) 359, 539
BstAPI GCANNNNNTGC 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 792
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 248, 588
BstDSI CCRYGG 1 cut(s) 259
BstENI CCTNNNNNAGG 1 cut(s) 485
BstF5I GGATG 1 cut(s) 222
BstFNI CGCG 1 cut(s) 63
BstHHI GCGC 2 cut(s) 63, 677
BstKTI GATC 4 cut(s) 235, 241, 327, 480
BstMAI GTCTC 4 cut(s) 103, 584, 598, 785
BstMBI GATC 4 cut(s) 232, 238, 324, 477
BstMWI GCNNNNNNNGC 3 cut(s) 209, 452, 703
BstNSI RCATGY 2 cut(s) 746, 767
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 3 cut(s) 433, 436, 439
BstV2I GAAGAC 1 cut(s) 42
BstXI CCANNNNNNTGG 1 cut(s) 795
BstZ17I GTATAC 1 cut(s) 664
BsuRI GGCC 2 cut(s) 351, 823
BtgI CCRYGG 1 cut(s) 259
BtrI CACGTC 1 cut(s) 635
BtsCI GGATG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 28
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 3 cut(s) 241, 319, 327
CfoI GCGC 2 cut(s) 63, 677
Cfr13I GGNCC 1 cut(s) 82
CseI GACGC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 65, 712
CviAII CATG 7 cut(s) 242, 260, 320, 328, 471, 743, 764
CviQI GTAC 2 cut(s) 65, 712
DdeI CTNAG 2 cut(s) 248, 588
DpnI GATC 4 cut(s) 234, 240, 326, 479
DpnII GATC 4 cut(s) 232, 238, 324, 477
DriI GACNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 821
Eam1104I CTCTTC 2 cut(s) 359, 539
Eam1105I GACNNNNNGTC 1 cut(s) 80
EarI CTCTTC 2 cut(s) 359, 539
Ecl136II GAGCTC 1 cut(s) 706
Eco130I CCWWGG 2 cut(s) 191, 259
Eco24I GRGCYC 1 cut(s) 708
Eco31I GGTCTC 1 cut(s) 785
Eco47I GGWCC 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 706
Eco57I CTGAAG 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 782
EcoICRI GAGCTC 1 cut(s) 706
EcoNI CCTNNNNNAGG 1 cut(s) 485
EcoT14I CCWWGG 2 cut(s) 191, 259
EcoT38I GRGCYC 1 cut(s) 708
ErhI CCWWGG 2 cut(s) 191, 259
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 7 cut(s) 245, 263, 323, 331, 474, 746, 767
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 518, 550
FaqI GGGAC 1 cut(s) 351
FatI CATG 7 cut(s) 241, 259, 319, 327, 470, 742, 763
FbaI TGATCA 1 cut(s) 238
FblI GTMKAC 1 cut(s) 663
Fnu4HI GCNGC 4 cut(s) 447, 450, 453, 821
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 1 cut(s) 708
Fsp4HI GCNGC 4 cut(s) 447, 450, 453, 821
FspBI CTAG 1 cut(s) 192
GlaI GCGC 2 cut(s) 62, 676
GluI GCNGC 4 cut(s) 447, 450, 453, 821
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 2 cut(s) 351, 823
HgaI GACGC 1 cut(s) 85
HhaI GCGC 2 cut(s) 63, 677
Hin1II CATG 7 cut(s) 245, 263, 323, 331, 474, 746, 767
Hin6I GCGC 2 cut(s) 61, 675
HinP1I GCGC 2 cut(s) 61, 675
HincII GTYRAC 1 cut(s) 467
HindII GTYRAC 1 cut(s) 467
HinfI GANTC 3 cut(s) 87, 592, 614
HphI GGTGA 3 cut(s) 134, 276, 507
Hpy166II GTNNAC 3 cut(s) 284, 467, 664
Hpy188I TCNGA 7 cut(s) 86, 127, 159, 411, 562, 589, 740
Hpy188III TCNNGA 6 cut(s) 230, 236, 242, 320, 328, 782
Hpy8I GTNNAC 3 cut(s) 284, 467, 664
HpyAV CCTTC 4 cut(s) 50, 164, 516, 650
HpyCH4IV ACGT 1 cut(s) 634
HpyCH4V TGCA 6 cut(s) 7, 294, 543, 669, 697, 830
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 452, 703
HpyF3I CTNAG 2 cut(s) 248, 588
HpySE526I ACGT 1 cut(s) 634
Hsp92II CATG 7 cut(s) 245, 263, 323, 331, 474, 746, 767
HspAI GCGC 2 cut(s) 61, 675
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 4 cut(s) 232, 238, 324, 477
LguI GCTCTTC 1 cut(s) 539
Lsp1109I GCAGC 3 cut(s) 433, 436, 439
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 634
MaeIII GTNAC 1 cut(s) 140
MalI GATC 4 cut(s) 234, 240, 326, 479
MboI GATC 4 cut(s) 232, 238, 324, 477
MboII GAAGA 3 cut(s) 47, 346, 526
MhlI GDGCHC 2 cut(s) 534, 708
MluCI AATT 2 cut(s) 51, 134
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 3 cut(s) 150, 434, 581
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 2 cut(s) 303, 435
MslI CAYNNNNRTG 2 cut(s) 723, 793
MspA1I CMGCKG 2 cut(s) 182, 446
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 3 cut(s) 209, 452, 703
NcoI CCATGG 1 cut(s) 259
NdeII GATC 4 cut(s) 232, 238, 324, 477
NlaIII CATG 7 cut(s) 245, 263, 323, 331, 474, 746, 767
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 140
NspI RCATGY 2 cut(s) 746, 767
NspV TTCGAA 1 cut(s) 792
PaeR7I CTCGAG 1 cut(s) 782
PagI TCATGA 3 cut(s) 241, 319, 327
PciI ACATGT 2 cut(s) 742, 763
PciSI GCTCTTC 1 cut(s) 539
PcsI WCGNNNNNNNCGW 1 cut(s) 789
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 2 cut(s) 87, 614
PflMI CCANNNNNTGG 1 cut(s) 108
PkrI GCNGC 4 cut(s) 448, 451, 454, 822
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PscI ACATGT 2 cut(s) 742, 763
Psp124BI GAGCTC 1 cut(s) 708
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 2 cut(s) 66, 713
RsaNI GTAC 2 cut(s) 65, 712
RseI CAYNNNNRTG 2 cut(s) 723, 793
SacI GAGCTC 1 cut(s) 708
SapI GCTCTTC 1 cut(s) 539
SaqAI TTAA 2 cut(s) 303, 435
SatI GCNGC 4 cut(s) 447, 450, 453, 821
Sau3AI GATC 4 cut(s) 232, 238, 324, 477
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 586
SduI GDGCHC 2 cut(s) 534, 708
SetI ASST 9 cut(s) 42, 73, 79, 249, 448, 520, 531, 637, 708
Sfr274I CTCGAG 1 cut(s) 782
SfuI TTCGAA 1 cut(s) 792
SinI GGWCC 1 cut(s) 82
SlaI CTCGAG 1 cut(s) 782
SmiMI CAYNNNNRTG 2 cut(s) 723, 793
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
Sse9I AATT 2 cut(s) 51, 134
SsiI CCGC 4 cut(s) 145, 180, 646, 820
SspMI CTAG 1 cut(s) 192
SstI GAGCTC 1 cut(s) 708
StyI CCWWGG 2 cut(s) 191, 259
TaiI ACGT 1 cut(s) 637
TaqI TCGA 5 cut(s) 73, 612, 750, 783, 792
TaqII GACCGA 1 cut(s) 473
TasI AATT 2 cut(s) 51, 134
TauI GCSGC 1 cut(s) 823
TfiI GAWTC 2 cut(s) 87, 614
Tru1I TTAA 2 cut(s) 303, 435
Tru9I TTAA 2 cut(s) 303, 435
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 3 cut(s) 446, 449, 452
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 3 cut(s) 211, 669, 671
Van91I CCANNNNNTGG 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 82
XagI CCTNNNNNAGG 1 cut(s) 485
XapI RAATTY 2 cut(s) 51, 134
XceI RCATGY 2 cut(s) 746, 767
XcmI CCANNNNNNNNNTGG 2 cut(s) 275, 344
XhoI CTCGAG 1 cut(s) 782
XmaJI CCTAGG 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 663
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.