Rmu_co8114622.1_g000001

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8114622.1
OG0000237
Physical Location & Seq
Reverse (-)
2 .. 456
455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8114622.1_g000001.1.cds

Sequence Viewer

Length: 455 bp
atgtttagtgaggtagcatactttcacatagatgaagaacgtgacggttttattgataaccctcctcacttttatgagaaggacgttcacaggaggaaatgtagatactttcaggagtctcatgacgggcaccatttgtatcttattgatatatatcggccttgtattactaaatttgaagtgtttgagatggggaaagactactctggttggtttgtcaagtaccttgttgacattgatcccatatgccggtggaacctgtctgatcgatttgttgttctatttctagatcaagatgaaaatgaagaagaggaaagttcatctctgttgctgcatatgcctggcaaactcatttcttataatcttaagagcaagacctacaaatctcttgatttaactcccaagcccggagttaaggattctctcttacgagttgaagcagataattatcgata
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

151

Amino Acids

18.12

Weight (kDa)

5.33

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
AccB1I GGYRCC 1 cut(s) 129
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 173
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 2 cut(s) 249, 407
AflII CTTAAG 1 cut(s) 365
AgsI TTSAA 2 cut(s) 179, 437
AjnI CCWGG 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 233
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 331
ApoI RAATTY 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 408
BaeGI GKGCMC 1 cut(s) 132
BanI GGYRCC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 318
BccI CCATC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 342
BcnI CCSGG 1 cut(s) 408
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 1 cut(s) 287
BfrI CTTAAG 1 cut(s) 365
BisI GCNGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 333
Bme1390I CCNGG 2 cut(s) 342, 408
BmiI GGNNCC 2 cut(s) 131, 257
BmrFI CCNGG 2 cut(s) 342, 408
BpuMI CCSGG 1 cut(s) 408
Bsa29I ATCGAT 2 cut(s) 268, 451
BsaBI GATNNNNATC 2 cut(s) 153, 447
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 407
Bse118I RCCGGY 1 cut(s) 249
Bse8I GATNNNNATC 2 cut(s) 153, 447
BseBI CCWGG 1 cut(s) 342
BseCI ATCGAT 2 cut(s) 268, 451
BseJI GATNNNNATC 2 cut(s) 153, 447
BseLI CCNNNNNNNGG 2 cut(s) 249, 407
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 1 cut(s) 318
BshFI GGCC 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 129
BshVI ATCGAT 2 cut(s) 268, 451
BsiSI CCGG 2 cut(s) 250, 408
BslI CCNNNNNNNGG 2 cut(s) 249, 407
BsmAI GTCTC 1 cut(s) 123
BsnI GGCC 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 3 cut(s) 238, 265, 289
BspANI GGCC 1 cut(s) 160
BspDI ATCGAT 2 cut(s) 268, 451
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 131, 257
BspPI GGATC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 129
BspTI CTTAAG 1 cut(s) 365
BsrFI RCCGGY 1 cut(s) 249
BssAI RCCGGY 1 cut(s) 249
BssMI GATC 3 cut(s) 238, 265, 289
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 303
BstAFI CTTAAG 1 cut(s) 365
BstKTI GATC 3 cut(s) 241, 268, 292
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 3 cut(s) 238, 265, 289
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 2 cut(s) 340, 406
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 318
Bsu15I ATCGAT 2 cut(s) 268, 451
BsuRI GGCC 1 cut(s) 160
BsuTUI ATCGAT 2 cut(s) 268, 451
CciI TCATGA 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 249
ClaI ATCGAT 2 cut(s) 268, 451
Csp6I GTAC 1 cut(s) 223
CviAII CATG 1 cut(s) 122
CviJI RGCY 2 cut(s) 160, 406
CviKI_1 RGCY 2 cut(s) 160, 406
CviQI GTAC 1 cut(s) 223
DpnI GATC 3 cut(s) 240, 267, 291
DpnII GATC 3 cut(s) 238, 265, 289
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 340
FaeI CATG 1 cut(s) 125
FatI CATG 1 cut(s) 121
FauNDI CATATG 2 cut(s) 245, 336
Fnu4HI GCNGC 1 cut(s) 332
Fsp4HI GCNGC 1 cut(s) 332
FspBI CTAG 1 cut(s) 287
GluI GCNGC 1 cut(s) 332
HaeIII GGCC 1 cut(s) 160
HapII CCGG 2 cut(s) 250, 408
Hin1II CATG 1 cut(s) 125
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 2 cut(s) 116, 419
HpaII CCGG 2 cut(s) 250, 408
Hpy166II GTNNAC 2 cut(s) 88, 232
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 5 cut(s) 113, 122, 287, 293, 389
Hpy8I GTNNAC 2 cut(s) 88, 232
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 2 cut(s) 40, 84
HpyCH4V TGCA 1 cut(s) 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpySE526I ACGT 2 cut(s) 40, 84
Hsp92II CATG 1 cut(s) 125
Kzo9I GATC 3 cut(s) 238, 265, 289
LpnPI CCDG 8 cut(s) 76, 98, 192, 263, 272, 327, 354, 421
Lsp1109I GCAGC 1 cut(s) 318
MaeI CTAG 1 cut(s) 287
MaeII ACGT 2 cut(s) 40, 84
MaeIII GTNAC 1 cut(s) 41
MalI GATC 3 cut(s) 240, 267, 291
MboI GATC 3 cut(s) 238, 265, 289
MboII GAAGA 3 cut(s) 47, 317, 320
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 2 cut(s) 173, 445
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 5 cut(s) 4, 72, 75, 87, 304
MseI TTAA 3 cut(s) 366, 395, 414
MslI CAYNNNNRTG 2 cut(s) 30, 72
MspCI CTTAAG 1 cut(s) 365
MspI CCGG 2 cut(s) 250, 408
MspR9I CCNGG 2 cut(s) 342, 408
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 337
NciI CCSGG 1 cut(s) 408
NdeI CATATG 2 cut(s) 245, 336
NdeII GATC 3 cut(s) 238, 265, 289
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 2 cut(s) 131, 257
NmuCI GTSAC 1 cut(s) 41
PagI TCATGA 1 cut(s) 121
PfeI GAWTC 1 cut(s) 419
PkrI GCNGC 1 cut(s) 333
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PsiI TTATAA 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 2 cut(s) 131, 257
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 2 cut(s) 30, 72
SaqAI TTAA 3 cut(s) 366, 395, 414
SatI GCNGC 1 cut(s) 332
Sau3AI GATC 3 cut(s) 238, 265, 289
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 342, 408
SduI GDGCHC 1 cut(s) 132
SetI ASST 6 cut(s) 15, 43, 87, 228, 261, 380
SmiMI CAYNNNNRTG 2 cut(s) 30, 72
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 2 cut(s) 173, 445
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 2 cut(s) 340, 406
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 2 cut(s) 43, 87
TaqI TCGA 2 cut(s) 268, 451
TasI AATT 2 cut(s) 173, 445
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 3 cut(s) 366, 395, 414
Tru9I TTAA 3 cut(s) 366, 395, 414
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 331
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 48, 309, 312, 318
Vha464I CTTAAG 1 cut(s) 365
XapI RAATTY 1 cut(s) 173
XbaI TCTAGA 1 cut(s) 286
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.