RLG00000022269

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000237
Physical Location & Seq
Forward (+)
82111408 .. 82113894
2487 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022269

Sequence Viewer

Length: 720 bp
ATGGCATATAAACTGAATGGGTGTAGTAACATGCTGGCTGCAAGCCTAGGCGGCAGACATGACAAAGGTTCACCCTTCAATCCTCTCAGTGTAGTTCAAAACCAATATAATAATCACATCAGAGTTATCCAGTCCTGCAACGGCCTCTTCTTGTGCCATCTTTTGAGTGCAAAAGAAGTGAACCCCCCATATTTTATTCTCAATCCCACAACCAACCAGTTCTCCACACTTATTCCTCCAGCAGCTACTGCTGTTACTAACGATGCTGGTCAACAAGTAGAACCCTATATCATCAGTATTGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGCGCAGTCTGGTGACAGGCGCCATTTGCATCTTATTGATATTTATGTGCCTGATATCTCTCAATTTGAAGTTTTGGAGATGGGAAAAGACTACTCTGGCTGGTTTGTCAAGTACCTTGTTGACCTTGATCCCATATGCACTGCTTACCCCTGGTTTCGATTGGATCGATTTATCATTCTCTTTCTAGCTCAAGACGAAATTGAAGGAGAGGAATGTTCATCTCTGTTGCTGCATACAGCTGGCAAAGTCATCTCTTATAATCTTAAGAGTAGGACGTTCAAATCTTTTGAGTTAGCTCCCAAGGCCGGTGTTGATATTGTCTCTTACGATCGAGTTGGTGAAAAAAATTATCGGTACGTGGAGACATTGGCTTGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

240

Amino Acids

26.85

Weight (kDa)

6.15

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AccB1I GGYRCC 1 cut(s) 357
AciI CCGC 1 cut(s) 51
AclWI GGATC 2 cut(s) 461, 510
AcyI GRCGYC 1 cut(s) 358
AfaI GTAC 2 cut(s) 452, 695
AfiI CCNNNNNNNGG 1 cut(s) 644
AflII CTTAAG 1 cut(s) 602
AgsI TTSAA 5 cut(s) 79, 98, 407, 542, 619
AjnI CCWGG 1 cut(s) 488
AluBI AGCT 4 cut(s) 245, 527, 578, 635
AluI AGCT 4 cut(s) 245, 527, 578, 635
Alw26I GTCTC 2 cut(s) 664, 695
AlwI GGATC 2 cut(s) 461, 510
AlwNI CAGNNNCTG 1 cut(s) 248
AoxI GGCC 2 cut(s) 142, 642
ApeKI GCWGC 3 cut(s) 38, 242, 568
AspA2I CCTAGG 1 cut(s) 46
AspLEI GCGC 2 cut(s) 343, 360
AsuHPI GGTGA 4 cut(s) 63, 318, 362, 689
AvrII CCTAGG 1 cut(s) 46
BanI GGYRCC 1 cut(s) 357
BbvI GCAGC 3 cut(s) 25, 254, 555
BccI CCATC 2 cut(s) 165, 412
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 490
BcoDI GTCTC 2 cut(s) 664, 695
BfaI CTAG 2 cut(s) 47, 524
BfoI RGCGCY 1 cut(s) 361
BfrI CTTAAG 1 cut(s) 602
BglI GCCNNNNNGGC 1 cut(s) 51
BisI GCNGC 4 cut(s) 39, 52, 243, 569
BlnI CCTAGG 1 cut(s) 46
BlsI GCNGC 4 cut(s) 40, 53, 244, 570
Bme1390I CCNGG 1 cut(s) 490
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 490
BmsI GCATC 2 cut(s) 253, 376
BpmI CTGGAG 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 513
Bsa29I ATCGAT 1 cut(s) 505
BsaAI YACGTR 1 cut(s) 697
BsaHI GRCGYC 1 cut(s) 358
BsaJI CCNNGG 3 cut(s) 46, 488, 639
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 1 cut(s) 644
Bse118I RCCGGY 1 cut(s) 644
Bse1I ACTGG 2 cut(s) 130, 217
BseBI CCWGG 1 cut(s) 490
BseCI ATCGAT 1 cut(s) 505
BseDI CCNNGG 3 cut(s) 46, 488, 639
BseLI CCNNNNNNNGG 1 cut(s) 644
BseMII CTCAG 1 cut(s) 100
BseNI ACTGG 2 cut(s) 130, 217
BseXI GCAGC 3 cut(s) 25, 254, 555
Bsh1285I CGRYCG 1 cut(s) 670
BshFI GGCC 2 cut(s) 144, 644
BshNI GGYRCC 1 cut(s) 357
BshVI ATCGAT 1 cut(s) 505
BsiEI CGRYCG 1 cut(s) 670
BsiSI CCGG 1 cut(s) 645
BslI CCNNNNNNNGG 1 cut(s) 644
BsmAI GTCTC 2 cut(s) 664, 695
BsnI GGCC 2 cut(s) 144, 644
Bsp143I GATC 3 cut(s) 466, 502, 667
BspACI CCGC 1 cut(s) 51
BspANI GGCC 2 cut(s) 144, 644
BspCNI CTCAG 1 cut(s) 99
BspDI ATCGAT 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 359
BspPI GGATC 2 cut(s) 461, 510
BspT107I GGYRCC 1 cut(s) 357
BspTI CTTAAG 1 cut(s) 602
BsrFI RCCGGY 1 cut(s) 644
BsrI ACTGG 2 cut(s) 130, 217
BssAI RCCGGY 1 cut(s) 644
BssECI CCNNGG 3 cut(s) 46, 488, 639
BssMI GATC 3 cut(s) 466, 502, 667
BssNI GRCGYC 1 cut(s) 358
BssT1I CCWWGG 2 cut(s) 46, 639
Bst2UI CCWGG 1 cut(s) 490
Bst6I CTCTTC 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 358
BstAFI CTTAAG 1 cut(s) 602
BstAPI GCANNNNNTGC 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 697
BstC8I GCNNGC 3 cut(s) 36, 43, 580
BstDEI CTNAG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 2 cut(s) 343, 360
BstKTI GATC 3 cut(s) 469, 505, 670
BstMAI GTCTC 2 cut(s) 664, 695
BstMBI GATC 3 cut(s) 466, 502, 667
BstMCI CGRYCG 1 cut(s) 670
BstMWI GCNNNNNNNGC 4 cut(s) 51, 248, 364, 641
BstNI CCWGG 1 cut(s) 490
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 488
BstV1I GCAGC 3 cut(s) 25, 254, 555
Bsu15I ATCGAT 1 cut(s) 505
BsuRI GGCC 2 cut(s) 144, 644
BsuTUI ATCGAT 1 cut(s) 505
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 94, 477
Cac8I GCNNGC 3 cut(s) 36, 43, 580
CaiI CAGNNNCTG 1 cut(s) 248
CfoI GCGC 2 cut(s) 343, 360
Cfr10I RCCGGY 1 cut(s) 644
ClaI ATCGAT 1 cut(s) 505
Csp6I GTAC 2 cut(s) 451, 694
CviAII CATG 2 cut(s) 31, 59
CviQI GTAC 2 cut(s) 451, 694
DdeI CTNAG 1 cut(s) 86
DinI GGCGCC 1 cut(s) 359
DpnI GATC 3 cut(s) 468, 504, 669
DpnII GATC 3 cut(s) 466, 502, 667
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 2 cut(s) 46, 639
Eco32I GATATC 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 488
EcoRV GATATC 1 cut(s) 394
EcoT14I CCWWGG 2 cut(s) 46, 639
EgeI GGCGCC 1 cut(s) 359
EheI GGCGCC 1 cut(s) 359
ErhI CCWWGG 2 cut(s) 46, 639
FaeI CATG 2 cut(s) 34, 62
FatI CATG 2 cut(s) 30, 58
FauNDI CATATG 1 cut(s) 473
Fnu4HI GCNGC 4 cut(s) 39, 52, 243, 569
Fsp4HI GCNGC 4 cut(s) 39, 52, 243, 569
FspBI CTAG 2 cut(s) 47, 524
GlaI GCGC 2 cut(s) 342, 359
GluI GCNGC 4 cut(s) 39, 52, 243, 569
GsuI CTGGAG 1 cut(s) 222
HaeII RGCGCY 1 cut(s) 361
HaeIII GGCC 2 cut(s) 144, 644
HapII CCGG 1 cut(s) 645
HhaI GCGC 2 cut(s) 343, 360
Hin1I GRCGYC 1 cut(s) 358
Hin1II CATG 2 cut(s) 34, 62
Hin6I GCGC 2 cut(s) 341, 358
HinP1I GCGC 2 cut(s) 341, 358
HincII GTYRAC 2 cut(s) 272, 460
HindII GTYRAC 2 cut(s) 272, 460
HpaII CCGG 1 cut(s) 645
HphI GGTGA 4 cut(s) 63, 318, 362, 689
Hpy166II GTNNAC 4 cut(s) 71, 181, 272, 460
Hpy188I TCNGA 1 cut(s) 122
Hpy188III TCNNGA 1 cut(s) 530
Hpy8I GTNNAC 4 cut(s) 71, 181, 272, 460
HpyAV CCTTC 3 cut(s) 85, 327, 536
HpyCH4IV ACGT 2 cut(s) 614, 696
HpyCH4V TGCA 6 cut(s) 41, 138, 170, 367, 477, 571
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 248, 364, 641
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 2 cut(s) 614, 696
Hsp92I GRCGYC 1 cut(s) 358
Hsp92II CATG 2 cut(s) 34, 62
HspAI GCGC 2 cut(s) 341, 358
KasI GGCGCC 1 cut(s) 357
Kzo9I GATC 3 cut(s) 466, 502, 667
LmnI GCTCC 1 cut(s) 640
Lsp1109I GCAGC 3 cut(s) 25, 254, 555
LweI GCATC 2 cut(s) 253, 376
MaeI CTAG 2 cut(s) 47, 524
MaeII ACGT 2 cut(s) 614, 696
MaeIII GTNAC 3 cut(s) 26, 253, 350
MalI GATC 3 cut(s) 468, 504, 669
MboI GATC 3 cut(s) 466, 502, 667
MboII GAAGA 1 cut(s) 139
MluCI AATT 3 cut(s) 401, 537, 685
Mly113I GGCGCC 1 cut(s) 358
MnlI CCTC 5 cut(s) 93, 155, 246, 339, 541
MseI TTAA 1 cut(s) 603
MspA1I CMGCKG 1 cut(s) 578
MspCI CTTAAG 1 cut(s) 602
MspI CCGG 1 cut(s) 645
MspR9I CCNGG 1 cut(s) 490
MvaI CCWGG 1 cut(s) 490
MwoI GCNNNNNNNGC 4 cut(s) 51, 248, 364, 641
NarI GGCGCC 1 cut(s) 358
NdeI CATATG 1 cut(s) 473
NdeII GATC 3 cut(s) 466, 502, 667
NlaIII CATG 2 cut(s) 34, 62
NlaIV GGNNCC 1 cut(s) 359
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 502
PkrI GCNGC 4 cut(s) 40, 53, 244, 570
Ple19I CGATCG 1 cut(s) 670
PluTI GGCGCC 1 cut(s) 361
Ppu21I YACGTR 1 cut(s) 697
PsiI TTATAA 1 cut(s) 597
Psp6I CCWGG 1 cut(s) 488
PspGI CCWGG 1 cut(s) 488
PspN4I GGNNCC 1 cut(s) 359
PstNI CAGNNNCTG 1 cut(s) 248
PvuI CGATCG 1 cut(s) 670
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 2 cut(s) 452, 695
RsaNI GTAC 2 cut(s) 451, 694
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 4 cut(s) 39, 52, 243, 569
Sau3AI GATC 3 cut(s) 466, 502, 667
ScrFI CCNGG 1 cut(s) 490
SfaNI GCATC 2 cut(s) 253, 376
SfoI GGCGCC 1 cut(s) 359
SmlI CTYRAG 2 cut(s) 528, 602
SmoI CTYRAG 2 cut(s) 528, 602
Sse9I AATT 3 cut(s) 401, 537, 685
SsiI CCGC 1 cut(s) 51
SspDI GGCGCC 1 cut(s) 357
SspMI CTAG 2 cut(s) 47, 524
StyD4I CCNGG 1 cut(s) 488
StyI CCWWGG 2 cut(s) 46, 639
TaiI ACGT 2 cut(s) 617, 699
TaqI TCGA 3 cut(s) 496, 505, 670
TasI AATT 3 cut(s) 401, 537, 685
TauI GCSGC 1 cut(s) 54
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 2 cut(s) 94, 484
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 3 cut(s) 38, 242, 568
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 1 cut(s) 546
TspRI CASTG 2 cut(s) 94, 484
Vha464I CTTAAG 1 cut(s) 602
XceI RCATGY 1 cut(s) 34
XmaJI CCTAGG 1 cut(s) 46
XspI CTAG 2 cut(s) 47, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.