Rh2CG632700

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000237
Physical Location & Seq
Forward (+)
80519938 .. 80521396
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG632700.1

Sequence Viewer

Length: 384 bp
ATGGGGAAAGACTACTCTGGCTGGTTTGTCAAGTACCTTGTTGACATTGATCCCATATGCCGGCGGAAACTGTCTGATCAATTTGTTGTTCTATTTCTAGATCAAGACGAAAATGAAGAAGAGGAAAGTTCGTCTCTGTTGCTGCATACGCCTGGCAAACTCATTTCTTATAATCTTAAGAGCAAGACCTACAAATCTCTTGATTTAACTCCCAAGCCCGGAGTTGATGATTCTCTCTTACGAGTTGAAGCATCTAATTATCGATATATGGAGACTCTGGCCTGCATCTGCATATTCTTTGGTGTTCTTTTGATGGTTCTATCACCAATTGGAGGGCTGAGATCAATCATAGTTCAAGCCAAGACCTACGAGTTCTACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

127

Amino Acids

14.53

Weight (kDa)

5.12

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AciI CCGC 1 cut(s) 64
AclWI GGATC 1 cut(s) 44
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 3 cut(s) 60, 218, 332
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 2 cut(s) 248, 356
AjnI CCWGG 1 cut(s) 151
Alw26I GTCTC 2 cut(s) 138, 266
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 142
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 315
BbvI GCAGC 1 cut(s) 129
BccI CCATC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 153
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 138, 266
BfaI CTAG 1 cut(s) 98
BfrI CTTAAG 1 cut(s) 176
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme1390I CCNGG 2 cut(s) 153, 219
BmrFI CCNGG 2 cut(s) 153, 219
BmsI GCATC 2 cut(s) 260, 294
BplI GAGNNNNNCTC 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 219
Bsa29I ATCGAT 1 cut(s) 262
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 218, 332
Bse118I RCCGGY 1 cut(s) 60
BseBI CCWGG 1 cut(s) 153
BseCI ATCGAT 1 cut(s) 262
BseLI CCNNNNNNNGG 3 cut(s) 60, 218, 332
BseMII CTCAG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 129
BshFI GGCC 1 cut(s) 281
BshVI ATCGAT 1 cut(s) 262
BsiSI CCGG 2 cut(s) 61, 219
BslI CCNNNNNNNGG 3 cut(s) 60, 218, 332
BsmAI GTCTC 2 cut(s) 138, 266
BsmBI CGTCTC 1 cut(s) 138
BsnI GGCC 1 cut(s) 281
Bsp143I GATC 4 cut(s) 49, 76, 100, 341
BspACI CCGC 1 cut(s) 64
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 330
BspDI ATCGAT 1 cut(s) 262
BspPI GGATC 1 cut(s) 44
BspTI CTTAAG 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 60
BssMI GATC 4 cut(s) 49, 76, 100, 341
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 114
BstAFI CTTAAG 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 62, 283
BstDEI CTNAG 1 cut(s) 338
BstKTI GATC 4 cut(s) 52, 79, 103, 344
BstMAI GTCTC 2 cut(s) 138, 266
BstMBI GATC 4 cut(s) 49, 76, 100, 341
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 2 cut(s) 151, 217
BstV1I GCAGC 1 cut(s) 129
Bsu15I ATCGAT 1 cut(s) 262
BsuRI GGCC 1 cut(s) 281
BsuTUI ATCGAT 1 cut(s) 262
Cac8I GCNNGC 2 cut(s) 62, 283
Cfr10I RCCGGY 1 cut(s) 60
ClaI ATCGAT 1 cut(s) 262
Csp6I GTAC 1 cut(s) 34
CviJI RGCY 5 cut(s) 21, 217, 281, 337, 359
CviKI_1 RGCY 5 cut(s) 21, 217, 281, 337, 359
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 338
DpnI GATC 4 cut(s) 51, 78, 102, 343
DpnII GATC 4 cut(s) 49, 76, 100, 341
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EciI GGCGGA 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 151
Esp3I CGTCTC 1 cut(s) 138
FaiI YATR 8 cut(s) 56, 58, 147, 171, 267, 269, 293, 350
FauNDI CATATG 1 cut(s) 56
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 1 cut(s) 98
GluI GCNGC 1 cut(s) 143
HaeIII GGCC 1 cut(s) 281
HapII CCGG 2 cut(s) 61, 219
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 2 cut(s) 230, 274
HpaII CCGG 2 cut(s) 61, 219
HphI GGTGA 1 cut(s) 315
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 3 cut(s) 98, 104, 200
Hpy8I GTNNAC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 145, 285, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 1 cut(s) 338
KroI GCCGGC 1 cut(s) 60
KroNI GCCGGC 1 cut(s) 62
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 4 cut(s) 49, 76, 100, 341
LpnPI CCDG 8 cut(s) 3, 7, 74, 138, 165, 232, 263, 295
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 2 cut(s) 260, 294
MaeI CTAG 1 cut(s) 98
MalI GATC 4 cut(s) 51, 78, 102, 343
MboI GATC 4 cut(s) 49, 76, 100, 341
MboII GAAGA 2 cut(s) 128, 131
MfeI CAATTG 1 cut(s) 327
MluCI AATT 3 cut(s) 80, 256, 327
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 2 cut(s) 115, 326
MroNI GCCGGC 1 cut(s) 60
MseI TTAA 3 cut(s) 177, 206, 382
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 2 cut(s) 61, 219
MspR9I CCNGG 2 cut(s) 153, 219
MunI CAATTG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 148
NaeI GCCGGC 1 cut(s) 62
NciI CCSGG 1 cut(s) 219
NdeI CATATG 1 cut(s) 56
NdeII GATC 4 cut(s) 49, 76, 100, 341
NgoMIV GCCGGC 1 cut(s) 60
PdiI GCCGGC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 144
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PsiI TTATAA 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 3 cut(s) 177, 206, 382
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 4 cut(s) 49, 76, 100, 341
SchI GAGTC 1 cut(s) 268
ScrFI CCNGG 2 cut(s) 153, 219
SetI ASST 3 cut(s) 39, 191, 368
SfaNI GCATC 2 cut(s) 260, 294
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 3 cut(s) 80, 256, 327
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 2 cut(s) 151, 217
TaaI ACNGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 262
TasI AATT 3 cut(s) 80, 256, 327
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 3 cut(s) 177, 206, 382
Tru9I TTAA 3 cut(s) 177, 206, 382
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 129
Vha464I CTTAAG 1 cut(s) 176
XbaI TCTAGA 1 cut(s) 97
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.