FvH4_6g53660

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000237
Physical Location & Seq
Forward (+)
39310412 .. 39311250
839 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53660.t1

Sequence Viewer

Length: 807 bp
ATGTCGGACGTGCGGCGAGTTAATACACCTCTTTATCATTATGTTCTCAATCCCACAACCAACCAGTTCACCAAACTTGTTCCTCCAGCTGCTGCCGCCGCCACTACTACTGAACCCCGAATCTTCGGCTGTGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGTGGTCTTCCTTTGGTTCCGTGATGAACCAACTCCATGCGGCTGGTGCAGTTACCATAACATAGAGATATATTCTTCTGAGACTAAAAGTTGGAGTCTTGTCAATTCTTCTTTTGAAACTCAAGGTCAAATTTCCTACCAAGATGGGGTATACTGCAACGGTGCAGTTCACTGGGTTGGCCGGATTTGTGAGATGGCATATTATCACTTAGATGAAGAGCGTGTTGGATTGGTTGATGGTCTTCCTCGTTGTGAGGAGAACTGGGAAACTAGGGAGTATAGATACTTTAAGGAGTCTAGTGACAGCCATTTGCATCTTATTGATATTTATTCGCCTTGTTTTACTAAATTTGAAGTGTTGGAGATGGGAAGAGACTACTCTGGGTGGTTTGTCAAGTACAATGTGGATCTTGATCTTTTATGCACCGCTTACCCACGCTTTAAGGTGTTTTGTGTTCTCTTTCTTGCTAAAGGGGAAAATGAAGAGGAAAGTTCATCTCTGTTGCTGCATGCTCCTGGAAAAGTCTTCTCTTACAATGTTAAGAGTAACACCTTCAAATCTTTCGACTTAACACCTCAAGCCGGTGTTGGTCAGCGTAGTAATTATCGATATATGGAGTCCTTGGCTTGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

269

Amino Acids

30.87

Weight (kDa)

5.64

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 14 - 117 4.3e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 321
AciI CCGC 5 cut(s) 13, 96, 99, 210, 597
AclWI GGATC 1 cut(s) 585
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 2 cut(s) 300, 518
AfaI GTAC 1 cut(s) 569
AfiI CCNNNNNNNGG 2 cut(s) 316, 752
AgsI TTSAA 3 cut(s) 287, 524, 727
AjiI CACGTC 1 cut(s) 10
AjnI CCWGG 1 cut(s) 685
AjuI GAANNNNNNNTTGG 2 cut(s) 378, 410
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Alw26I GTCTC 2 cut(s) 245, 537
AlwI GGATC 1 cut(s) 585
AlwNI CAGNNNCTG 1 cut(s) 92
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 3 cut(s) 89, 92, 676
ApoI RAATTY 2 cut(s) 300, 518
AsuHPI GGTGA 2 cut(s) 61, 150
BbsI GAAGAC 3 cut(s) 169, 404, 688
BbvI GCAGC 3 cut(s) 76, 79, 663
BccI CCATC 4 cut(s) 308, 358, 401, 529
BciT130I CCWGG 1 cut(s) 687
BcoDI GTCTC 2 cut(s) 245, 537
BfaI CTAG 2 cut(s) 441, 468
BisI GCNGC 7 cut(s) 14, 90, 93, 96, 99, 211, 677
BlsI GCNGC 7 cut(s) 15, 91, 94, 97, 100, 212, 678
Bme1390I CCNGG 1 cut(s) 687
BmgBI CACGTC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 687
BmrI ACTGGG 2 cut(s) 352, 442
BmsI GCATC 1 cut(s) 493
BmuI ACTGGG 2 cut(s) 352, 442
BpiI GAAGAC 3 cut(s) 169, 404, 688
BpmI CTGGAG 1 cut(s) 69
BpuEI CTTGAG 2 cut(s) 276, 732
Bsa29I ATCGAT 1 cut(s) 778
BsaBI GATNNNNATC 1 cut(s) 582
BsaJI CCNNGG 1 cut(s) 792
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 752
Bse118I RCCGGY 1 cut(s) 752
Bse1I ACTGG 3 cut(s) 64, 347, 437
Bse8I GATNNNNATC 1 cut(s) 582
BseBI CCWGG 1 cut(s) 687
BseCI ATCGAT 1 cut(s) 778
BseDI CCNNGG 1 cut(s) 792
BseJI GATNNNNATC 1 cut(s) 582
BseLI CCNNNNNNNGG 2 cut(s) 316, 752
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 3 cut(s) 64, 347, 437
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 3 cut(s) 76, 79, 663
BsgI GTGCAG 2 cut(s) 238, 354
BshFI GGCC 1 cut(s) 351
BshVI ATCGAT 1 cut(s) 778
BsiSI CCGG 2 cut(s) 352, 753
BslI CCNNNNNNNGG 2 cut(s) 316, 752
BsmAI GTCTC 2 cut(s) 245, 537
BsnI GGCC 1 cut(s) 351
Bsp143I GATC 2 cut(s) 577, 583
BspACI CCGC 5 cut(s) 13, 96, 99, 210, 597
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 1 cut(s) 241
BspDI ATCGAT 1 cut(s) 778
BspLI GGNNCC 1 cut(s) 188
BspPI GGATC 1 cut(s) 585
BspQI GCTCTTC 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 752
BsrI ACTGG 3 cut(s) 64, 347, 437
BssAI RCCGGY 1 cut(s) 752
BssECI CCNNGG 1 cut(s) 792
BssMI GATC 2 cut(s) 577, 583
BssNAI GTATAC 1 cut(s) 322
BssT1I CCWWGG 1 cut(s) 792
Bst1107I GTATAC 1 cut(s) 322
Bst2UI CCWGG 1 cut(s) 687
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 3 cut(s) 381, 535, 648
BstC8I GCNNGC 1 cut(s) 681
BstDEI CTNAG 2 cut(s) 249, 379
BstKTI GATC 2 cut(s) 580, 586
BstMAI GTCTC 2 cut(s) 245, 537
BstMBI GATC 2 cut(s) 577, 583
BstMWI GCNNNNNNNGC 3 cut(s) 95, 98, 216
BstNI CCWGG 1 cut(s) 687
BstNSI RCATGY 1 cut(s) 683
BstSCI CCNGG 1 cut(s) 685
BstV1I GCAGC 3 cut(s) 76, 79, 663
BstV2I GAAGAC 3 cut(s) 169, 404, 688
BstX2I RGATCY 1 cut(s) 577
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 1 cut(s) 577
BstZ17I GTATAC 1 cut(s) 322
Bsu15I ATCGAT 1 cut(s) 778
BsuRI GGCC 1 cut(s) 351
BsuTUI ATCGAT 1 cut(s) 778
BtrI CACGTC 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 681
CaiI CAGNNNCTG 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 752
ClaI ATCGAT 1 cut(s) 778
Csp6I GTAC 1 cut(s) 568
CviAII CATG 2 cut(s) 207, 680
CviJI RGCY 8 cut(s) 89, 129, 140, 213, 351, 477, 752, 797
CviKI_1 RGCY 8 cut(s) 89, 129, 140, 213, 351, 477, 752, 797
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 2 cut(s) 249, 379
DpnI GATC 2 cut(s) 579, 585
DpnII GATC 2 cut(s) 577, 583
EaeI YGGCCR 1 cut(s) 349
Eam1104I CTCTTC 3 cut(s) 381, 535, 648
EarI CTCTTC 3 cut(s) 381, 535, 648
Eco130I CCWWGG 1 cut(s) 792
EcoRII CCWGG 1 cut(s) 685
EcoT14I CCWWGG 1 cut(s) 792
ErhI CCWWGG 1 cut(s) 792
FaeI CATG 2 cut(s) 210, 683
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FatI CATG 2 cut(s) 206, 679
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 7 cut(s) 14, 90, 93, 96, 99, 211, 677
Fsp4HI GCNGC 7 cut(s) 14, 90, 93, 96, 99, 211, 677
FspBI CTAG 2 cut(s) 441, 468
GluI GCNGC 7 cut(s) 14, 90, 93, 96, 99, 211, 677
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 351
HapII CCGG 2 cut(s) 352, 753
Hin1II CATG 2 cut(s) 210, 683
HinfI GANTC 4 cut(s) 120, 265, 464, 788
HpaII CCGG 2 cut(s) 352, 753
HphI GGTGA 2 cut(s) 61, 150
Hpy166II GTNNAC 3 cut(s) 69, 322, 340
Hpy188I TCNGA 2 cut(s) 7, 250
Hpy188III TCNNGA 1 cut(s) 581
Hpy8I GTNNAC 3 cut(s) 69, 322, 340
HpyAV CCTTC 2 cut(s) 159, 733
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 6 cut(s) 219, 327, 335, 484, 594, 679
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 98, 216
HpyF3I CTNAG 2 cut(s) 249, 379
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 2 cut(s) 210, 683
Kzo9I GATC 2 cut(s) 577, 583
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 1 cut(s) 688
Lsp1109I GCAGC 3 cut(s) 76, 79, 663
LweI GCATC 1 cut(s) 493
MaeI CTAG 2 cut(s) 441, 468
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 3 cut(s) 221, 470, 716
MalI GATC 2 cut(s) 579, 585
MboI GATC 2 cut(s) 577, 583
MboII GAAGA 9 cut(s) 115, 169, 237, 270, 398, 404, 552, 665, 688
MflI RGATCY 1 cut(s) 577
MluCI AATT 4 cut(s) 274, 300, 518, 772
MlyI GAGTC 3 cut(s) 274, 473, 797
MmeI TCCRAC 3 cut(s) 242, 376, 510
MnlI CCTC 7 cut(s) 39, 93, 171, 418, 426, 649, 756
MseI TTAA 5 cut(s) 21, 459, 612, 711, 740
MslI CAYNNNNRTG 1 cut(s) 381
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 2 cut(s) 352, 753
MspR9I CCNGG 1 cut(s) 687
MvaI CCWGG 1 cut(s) 687
MwoI GCNNNNNNNGC 3 cut(s) 95, 98, 216
NdeII GATC 2 cut(s) 577, 583
NlaIII CATG 2 cut(s) 210, 683
NlaIV GGNNCC 1 cut(s) 188
NmuCI GTSAC 1 cut(s) 470
NspI RCATGY 1 cut(s) 683
PaeI GCATGC 1 cut(s) 683
PciSI GCTCTTC 1 cut(s) 381
PfeI GAWTC 1 cut(s) 120
PfoI TCCNGGA 1 cut(s) 685
PkrI GCNGC 7 cut(s) 15, 91, 94, 97, 100, 212, 678
PleI GAGTC 3 cut(s) 273, 472, 796
PpsI GAGTC 3 cut(s) 273, 472, 796
Psp6I CCWGG 1 cut(s) 685
PspGI CCWGG 1 cut(s) 685
PspN4I GGNNCC 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 577
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
RseI CAYNNNNRTG 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 5 cut(s) 21, 459, 612, 711, 740
SatI GCNGC 7 cut(s) 14, 90, 93, 96, 99, 211, 677
Sau3AI GATC 2 cut(s) 577, 583
SchI GAGTC 3 cut(s) 274, 473, 797
ScrFI CCNGG 1 cut(s) 687
SetI ASST 9 cut(s) 12, 31, 91, 163, 174, 298, 618, 725, 748
SfaNI GCATC 1 cut(s) 493
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 2 cut(s) 291, 747
SmoI CTYRAG 2 cut(s) 291, 747
SphI GCATGC 1 cut(s) 683
Sse9I AATT 4 cut(s) 274, 300, 518, 772
SsiI CCGC 5 cut(s) 13, 96, 99, 210, 597
SspMI CTAG 2 cut(s) 441, 468
StyD4I CCNGG 1 cut(s) 685
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 1 cut(s) 12
TaqI TCGA 2 cut(s) 735, 778
TasI AATT 4 cut(s) 274, 300, 518, 772
TatI WGTACW 1 cut(s) 567
TauI GCSGC 4 cut(s) 16, 98, 101, 213
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 5 cut(s) 21, 459, 612, 711, 740
Tru9I TTAA 5 cut(s) 21, 459, 612, 711, 740
TscAI CASTG 1 cut(s) 347
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 3 cut(s) 89, 92, 676
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 4 cut(s) 210, 399, 654, 666
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 1 cut(s) 347
XapI RAATTY 2 cut(s) 300, 518
XceI RCATGY 1 cut(s) 683
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 2 cut(s) 441, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.