RchiOBHm_Chr5g0059531

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000237
Physical Location & Seq
Forward (+)
64489880 .. 64491787
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33613

Sequence Viewer

Length: 1140 bp
ATGCAGAGTAGCATAGCAGCAGCAGAAACAGTTGGTCACAACGAAGACCTCCTCAAACAGCTTCTCCTGCGCTTACCAGCTAAATCACTCACCCGCTTCAAATGCGTCTCTAAGCTTTGGCTCTCTCTCATCTCCAGCCCCAAATTCTGCGACTCCCACACCCTCCGAAACCCAATCCCTAAATTCCCCTCCGCCTTCTTCTTAAGCAGAACCGCCACAACAGACCCCCAATTCATCTCCCTCCTTCCAAACACCAATCCAAACCCATCCAAACCTCTCGATTTCATCCCCGACCCGCAGGGCCTCCAGATTCTTCAGTCCTGCAATGGCTTGCTCTTGTGTTGTTCCTCTACAGATGAATTCACAATCCCCAGCAAATTCTATGTTGTCAATCCCACAACTAGCCGATTCTCGGAAATAGCTCTTCCACCTCCCTCTCCTAAACCCGTACCCACAAGGCTCTTGAGTGTTGCATTGGCTTTTGATCCTTCCAAATCGCTTCATTATAATGTGGTTTGCGTTTCGGGCTCCGGTACCATTCCTTCATTGCATCTGGAGATTGAGATTGAGATATATTCGTCTCGTACTCGAACCTGGAGGGCTGGTGGGTCTACTCATATGTGGTTTCCATCAATTGGTAAGTTCCTACCCGGTGTATACTGCAATGGGAGGATTCATTGGCTCAGCACGTTTTGTTGGTTGGTTCACTATGACATAGATGAAGGGCATTATGGAGTGGTGGATGAGCCCGGTTTTTCGGTGGAGAAGGAATGCATGTGTTTTGGGGAGTCTGGTGGCCGTTTGCATCTTATTGAAATGTATGGGAGTGATCTAAACAAGCTTCATGTGCTGGAGATGGGGAAGGACTACTCTGGCTGGTTTGTCAAGTACCGGGTTGATCTTAATCTCATGACTCCCGACTTTCCTTATACTCCTGCTGCATCCTGTCGTCCATTTTTCTTTCTTGATGCAGAGGAAAACGAGGAACAGAATCCTGTTCTTGTGCTGCGCATAGGTTATAAGTTCATCTCCTATGACATCAGGGATAAGAGCTGTAAGACACTCTGTGATTTGTTCATACCTTTGCTGGTTGGATGGAGAGATGCCTATCAATATATGGAGACTTTGGCTTGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

379

Amino Acids

42.74

Weight (kDa)

6.21

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 50 2.4e-06 F-box domain
b-prop_At3g26010-like PF24750 104 - 309 4.9e-07 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 105 - 229 1.6e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 507, 1020
Acc16I TGCGCA 1 cut(s) 1010
Acc65I GGTACC 1 cut(s) 533
AccB1I GGYRCC 1 cut(s) 533
AccB7I CCANNNNNTGG 1 cut(s) 635
AccI GTMKAC 2 cut(s) 611, 657
AciI CCGC 4 cut(s) 94, 192, 213, 296
AclWI GGATC 1 cut(s) 479
AcoI YGGCCR 1 cut(s) 796
AcsI RAATTY 4 cut(s) 143, 182, 359, 377
AcuI CTGAAG 1 cut(s) 299
AdeI CACNNNGTG 1 cut(s) 1067
AfaI GTAC 4 cut(s) 450, 535, 586, 890
AfiI CCNNNNNNNGG 2 cut(s) 412, 635
AflII CTTAAG 1 cut(s) 202
AgsI TTSAA 2 cut(s) 100, 815
AjnI CCWGG 1 cut(s) 593
AluBI AGCT 6 cut(s) 61, 80, 115, 422, 841, 1053
AluI AGCT 6 cut(s) 61, 80, 115, 422, 841, 1053
Alw26I GTCTC 3 cut(s) 112, 585, 1115
AlwI GGATC 1 cut(s) 479
AoxI GGCC 2 cut(s) 301, 796
ApeKI GCWGC 4 cut(s) 17, 20, 938, 1006
ApoI RAATTY 4 cut(s) 143, 182, 359, 377
Asp718I GGTACC 1 cut(s) 533
AspLEI GCGC 2 cut(s) 72, 1011
AspS9I GGNCC 1 cut(s) 301
AsuC2I CCSGG 3 cut(s) 651, 750, 893
AsuHPI GGTGA 1 cut(s) 82
BanI GGYRCC 1 cut(s) 533
BanII GRGCYC 2 cut(s) 530, 750
BarI GAAGNNNNNNTAC 2 cut(s) 526, 558
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 4 cut(s) 29, 32, 925, 993
BccI CCATC 4 cut(s) 274, 637, 850, 1089
BceAI ACGGC 1 cut(s) 783
BciT130I CCWGG 1 cut(s) 595
BcnI CCSGG 3 cut(s) 651, 750, 893
BcoDI GTCTC 3 cut(s) 112, 585, 1115
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 1 cut(s) 351
BfrI CTTAAG 1 cut(s) 202
BisI GCNGC 4 cut(s) 18, 21, 939, 1007
BlpI GCTNAGC 1 cut(s) 683
BlsI GCNGC 4 cut(s) 19, 22, 940, 1008
Bme1390I CCNGG 4 cut(s) 595, 651, 750, 893
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 2 cut(s) 529, 535
BmrFI CCNGG 4 cut(s) 595, 651, 750, 893
BmsI GCATC 5 cut(s) 559, 814, 950, 958, 1093
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 5 cut(s) 118, 290, 575, 616, 872
Bpu1102I GCTNAGC 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 484
BpuMI CCSGG 3 cut(s) 651, 750, 893
BsaBI GATNNNNATC 2 cut(s) 903, 1107
BsaWI WCCGGW 1 cut(s) 530
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 589, 619
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 635
Bse3DI GCAATG 3 cut(s) 331, 545, 670
Bse8I GATNNNNATC 2 cut(s) 903, 1107
BseBI CCWGG 1 cut(s) 595
BseGI GGATG 5 cut(s) 266, 285, 748, 941, 1100
BseJI GATNNNNATC 2 cut(s) 903, 1107
BseLI CCNNNNNNNGG 2 cut(s) 412, 635
BseMI GCAATG 3 cut(s) 331, 545, 670
BseMII CTCAG 1 cut(s) 697
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 4 cut(s) 29, 32, 925, 993
BseYI CCCAGC 1 cut(s) 371
BshFI GGCC 2 cut(s) 303, 798
BshNI GGYRCC 1 cut(s) 533
BsiSI CCGG 4 cut(s) 531, 651, 750, 892
BslI CCNNNNNNNGG 2 cut(s) 412, 635
BsmAI GTCTC 3 cut(s) 112, 585, 1115
BsmBI CGTCTC 2 cut(s) 112, 585
BsmI GAATGC 1 cut(s) 776
BsnI GGCC 2 cut(s) 303, 798
Bsp1286I GDGCHC 2 cut(s) 530, 750
Bsp143I GATC 3 cut(s) 484, 829, 898
Bsp1720I GCTNAGC 1 cut(s) 683
BspACI CCGC 4 cut(s) 94, 192, 213, 296
BspANI GGCC 2 cut(s) 303, 798
BspCNI CTCAG 1 cut(s) 696
BspHI TCATGA 1 cut(s) 909
BspLI GGNNCC 2 cut(s) 529, 535
BspPI GGATC 1 cut(s) 479
BspQI GCTCTTC 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 533
BspTI CTTAAG 1 cut(s) 202
BsrDI GCAATG 3 cut(s) 331, 545, 670
BssMI GATC 3 cut(s) 484, 829, 898
BssNAI GTATAC 1 cut(s) 658
Bst1107I GTATAC 1 cut(s) 658
Bst2UI CCWGG 1 cut(s) 595
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 429
BstAFI CTTAAG 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 2 cut(s) 111, 683
BstF5I GGATG 5 cut(s) 266, 285, 748, 941, 1100
BstHHI GCGC 2 cut(s) 72, 1011
BstKTI GATC 3 cut(s) 487, 832, 901
BstMAI GTCTC 3 cut(s) 112, 585, 1115
BstMBI GATC 3 cut(s) 484, 829, 898
BstMWI GCNNNNNNNGC 4 cut(s) 67, 102, 525, 847
BstNI CCWGG 1 cut(s) 595
BstNSI RCATGY 1 cut(s) 778
BstSCI CCNGG 4 cut(s) 593, 649, 748, 891
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 4 cut(s) 29, 32, 925, 993
BstV2I GAAGAC 1 cut(s) 51
BstZ17I GTATAC 1 cut(s) 658
BsuRI GGCC 2 cut(s) 303, 798
BtsCI GGATG 5 cut(s) 266, 285, 748, 941, 1100
Cac8I GCNNGC 1 cut(s) 332
CciI TCATGA 1 cut(s) 909
CfoI GCGC 2 cut(s) 72, 1011
Cfr13I GGNCC 1 cut(s) 301
CseI GACGC 1 cut(s) 94
Csp6I GTAC 4 cut(s) 449, 534, 585, 889
CviAII CATG 3 cut(s) 775, 845, 910
CviQI GTAC 4 cut(s) 449, 534, 585, 889
DdeI CTNAG 2 cut(s) 111, 683
DpnI GATC 3 cut(s) 486, 831, 900
DpnII GATC 3 cut(s) 484, 829, 898
DraIII CACNNNGTG 1 cut(s) 1067
EaeI YGGCCR 1 cut(s) 796
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
EciI GGCGGA 1 cut(s) 181
Eco24I GRGCYC 2 cut(s) 530, 750
Eco57I CTGAAG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 301
EcoRI GAATTC 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 593
EcoT22I ATGCAT 1 cut(s) 776
EcoT38I GRGCYC 2 cut(s) 530, 750
Esp3I CGTCTC 2 cut(s) 112, 585
FaeI CATG 3 cut(s) 778, 848, 913
FatI CATG 3 cut(s) 774, 844, 909
FauI CCCGC 2 cut(s) 101, 303
FauNDI CATATG 1 cut(s) 618
FblI GTMKAC 2 cut(s) 611, 657
Fnu4HI GCNGC 4 cut(s) 18, 21, 939, 1007
FokI GGATG 5 cut(s) 253, 272, 755, 928, 1107
FriOI GRGCYC 2 cut(s) 530, 750
Fsp4HI GCNGC 4 cut(s) 18, 21, 939, 1007
FspBI CTAG 1 cut(s) 402
FspI TGCGCA 1 cut(s) 1010
GlaI GCGC 2 cut(s) 71, 1010
GluI GCNGC 4 cut(s) 18, 21, 939, 1007
GsaI CCCAGC 1 cut(s) 375
GsuI CTGGAG 5 cut(s) 118, 290, 575, 616, 872
HaeIII GGCC 2 cut(s) 303, 798
HapII CCGG 4 cut(s) 531, 651, 750, 892
HgaI GACGC 1 cut(s) 94
HhaI GCGC 2 cut(s) 72, 1011
Hin1II CATG 3 cut(s) 778, 848, 913
Hin6I GCGC 2 cut(s) 70, 1009
HinP1I GCGC 2 cut(s) 70, 1009
HindIII AAGCTT 2 cut(s) 113, 839
HinfI GANTC 7 cut(s) 152, 310, 408, 673, 788, 913, 991
HpaII CCGG 4 cut(s) 531, 651, 750, 892
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 3 cut(s) 612, 658, 706
Hpy188I TCNGA 2 cut(s) 167, 415
Hpy188III TCNNGA 7 cut(s) 278, 307, 463, 554, 910, 917, 965
Hpy8I GTNNAC 3 cut(s) 612, 658, 706
HpyAV CCTTC 7 cut(s) 205, 254, 498, 552, 716, 760, 856
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 689
HpyCH4V TGCA 9 cut(s) 4, 324, 473, 550, 663, 774, 805, 941, 971
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 102, 525, 847
HpyF3I CTNAG 2 cut(s) 111, 683
HpySE526I ACGT 1 cut(s) 689
Hsp92II CATG 3 cut(s) 778, 848, 913
HspAI GCGC 2 cut(s) 70, 1009
KpnI GGTACC 1 cut(s) 537
Kzo9I GATC 3 cut(s) 484, 829, 898
LguI GCTCTTC 1 cut(s) 429
LmnI GCTCC 1 cut(s) 533
Lsp1109I GCAGC 4 cut(s) 29, 32, 925, 993
LweI GCATC 5 cut(s) 559, 814, 950, 958, 1093
MaeI CTAG 1 cut(s) 402
MaeII ACGT 1 cut(s) 689
MaeIII GTNAC 1 cut(s) 35
MalI GATC 3 cut(s) 486, 831, 900
MboI GATC 3 cut(s) 484, 829, 898
MboII GAAGA 4 cut(s) 56, 190, 305, 416
MfeI CAATTG 1 cut(s) 633
MhlI GDGCHC 2 cut(s) 530, 750
MluCI AATT 6 cut(s) 143, 182, 230, 359, 377, 633
MlyI GAGTC 3 cut(s) 146, 797, 907
MmeI TCCRAC 1 cut(s) 1072
Mph1103I ATGCAT 1 cut(s) 776
MseI TTAA 2 cut(s) 203, 903
MslI CAYNNNNRTG 1 cut(s) 507
MspCI CTTAAG 1 cut(s) 202
MspI CCGG 4 cut(s) 531, 651, 750, 892
MspR9I CCNGG 4 cut(s) 595, 651, 750, 893
MunI CAATTG 1 cut(s) 633
Mva1269I GAATGC 1 cut(s) 776
MvaI CCWGG 1 cut(s) 595
MwoI GCNNNNNNNGC 4 cut(s) 67, 102, 525, 847
NciI CCSGG 3 cut(s) 651, 750, 893
NdeI CATATG 1 cut(s) 618
NdeII GATC 3 cut(s) 484, 829, 898
NlaIII CATG 3 cut(s) 778, 848, 913
NlaIV GGNNCC 2 cut(s) 529, 535
NmuCI GTSAC 1 cut(s) 35
NsbI TGCGCA 1 cut(s) 1010
NsiI ATGCAT 1 cut(s) 776
NspI RCATGY 1 cut(s) 778
PagI TCATGA 1 cut(s) 909
PciSI GCTCTTC 1 cut(s) 429
PctI GAATGC 1 cut(s) 776
PfeI GAWTC 4 cut(s) 310, 408, 673, 991
PflMI CCANNNNNTGG 1 cut(s) 635
PkrI GCNGC 4 cut(s) 19, 22, 940, 1008
PleI GAGTC 3 cut(s) 146, 796, 907
PpsI GAGTC 3 cut(s) 146, 796, 907
PsiI TTATAA 2 cut(s) 507, 1020
Psp6I CCWGG 1 cut(s) 593
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 1 cut(s) 593
PspN4I GGNNCC 2 cut(s) 529, 535
PspPI GGNCC 1 cut(s) 301
RsaI GTAC 4 cut(s) 450, 535, 586, 890
RsaNI GTAC 4 cut(s) 449, 534, 585, 889
RseI CAYNNNNRTG 1 cut(s) 507
SapI GCTCTTC 1 cut(s) 429
SaqAI TTAA 2 cut(s) 203, 903
SatI GCNGC 4 cut(s) 18, 21, 939, 1007
Sau3AI GATC 3 cut(s) 484, 829, 898
Sau96I GGNCC 1 cut(s) 301
SchI GAGTC 3 cut(s) 146, 797, 907
ScrFI CCNGG 4 cut(s) 595, 651, 750, 893
SduI GDGCHC 2 cut(s) 530, 750
SfaNI GCATC 5 cut(s) 559, 814, 950, 958, 1093
SfcI CTRYAG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 2 cut(s) 202, 463
SmoI CTYRAG 2 cut(s) 202, 463
Sse9I AATT 6 cut(s) 143, 182, 230, 359, 377, 633
SsiI CCGC 4 cut(s) 94, 192, 213, 296
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 4 cut(s) 593, 649, 748, 891
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 692
TaqI TCGA 2 cut(s) 279, 589
TasI AATT 6 cut(s) 143, 182, 230, 359, 377, 633
TfiI GAWTC 4 cut(s) 310, 408, 673, 991
Tru1I TTAA 2 cut(s) 203, 903
Tru9I TTAA 2 cut(s) 203, 903
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 4 cut(s) 17, 20, 938, 1006
Tsp45I GTSAC 1 cut(s) 35
Van91I CCANNNNNTGG 1 cut(s) 635
Vha464I CTTAAG 1 cut(s) 202
XapI RAATTY 4 cut(s) 143, 182, 359, 377
XceI RCATGY 1 cut(s) 778
XmiI GTMKAC 2 cut(s) 611, 657
XspI CTAG 1 cut(s) 402
Zsp2I ATGCAT 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.