Rw4G005550

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000237
Physical Location & Seq
Reverse (-)
11223340 .. 11223908
569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G005550.1

Sequence Viewer

Length: 456 bp
ATGTCATACTATCAAGTAGATGAAGAGCTTGTCGGATTGGTTGATAGTCCTCCTCATTGTTACGAGAAGAAATGGAACCATAGGATGTATAGATATTTTAAGGAGTCTACTGGCGGCCATTTGCATCTTATTGATATTTATTCTCCTTGTCCTACTAAATTTGAAGTATTGGGGATGGGGAGAGATTACTCTGGCTGGTTTATCAAGTACCATGTTGATCTTGATCCCTTATGCACCGCTTACCCATGCTTCCTAAGTGAACAGTTTGTTGTTCTGTTCCTTGCTCAAGACGAAAATGAAGGGGAAAGTTCATCCCTGTTGCTGCATTCTCCTGGTACAGTCATCTCTTATAATCTTAAGAGTAAGACCTCCAAATCTTTTGAGTTAACTATTGATCAGTATTTACTAGTTGGATATTCCAATTATCCATATATGGAGACTTTGGCTTGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

151

Amino Acids

17.48

Weight (kDa)

5.1

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AccI GTMKAC 1 cut(s) 107
AciI CCGC 2 cut(s) 114, 237
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 2 cut(s) 209, 337
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 1 cut(s) 164
AhlI ACTAGT 1 cut(s) 406
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 1 cut(s) 218
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 322
ApoI RAATTY 1 cut(s) 158
BbvI GCAGC 1 cut(s) 309
BccI CCATC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 333
BclI TGATCA 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 431
BcuI ACTAGT 1 cut(s) 406
BfaI CTAG 1 cut(s) 407
BfrI CTTAAG 1 cut(s) 356
BisI GCNGC 2 cut(s) 115, 323
BlsI GCNGC 2 cut(s) 116, 324
Bme1390I CCNGG 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 115
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 1 cut(s) 333
BseGI GGATG 3 cut(s) 90, 180, 311
BseJI GATNNNNATC 1 cut(s) 222
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 309
BshFI GGCC 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 431
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 1 cut(s) 117
Bsp143I GATC 3 cut(s) 217, 223, 394
BspACI CCGC 2 cut(s) 114, 237
BspANI GGCC 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 77
BspPI GGATC 1 cut(s) 218
BspQI GCTCTTC 1 cut(s) 18
BspTI CTTAAG 1 cut(s) 356
BsrI ACTGG 1 cut(s) 115
BssMI GATC 3 cut(s) 217, 223, 394
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 264, 340
Bst6I CTCTTC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 356
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 3 cut(s) 90, 180, 311
BstKTI GATC 3 cut(s) 220, 226, 397
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 3 cut(s) 217, 223, 394
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 309
BsuRI GGCC 1 cut(s) 117
BtsCI GGATG 3 cut(s) 90, 180, 311
Csp6I GTAC 2 cut(s) 208, 336
CviAII CATG 2 cut(s) 212, 246
CviJI RGCY 4 cut(s) 28, 117, 195, 446
CviKI_1 RGCY 4 cut(s) 28, 117, 195, 446
CviQI GTAC 2 cut(s) 208, 336
DdeI CTNAG 1 cut(s) 254
DpnI GATC 3 cut(s) 219, 225, 396
DpnII GATC 3 cut(s) 217, 223, 394
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 331
FaeI CATG 2 cut(s) 215, 249
FatI CATG 2 cut(s) 211, 245
FbaI TGATCA 1 cut(s) 394
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 2 cut(s) 115, 323
FokI GGATG 3 cut(s) 97, 187, 298
Fsp4HI GCNGC 2 cut(s) 115, 323
FspBI CTAG 1 cut(s) 407
GluI GCNGC 2 cut(s) 115, 323
HaeIII GGCC 1 cut(s) 117
Hin1II CATG 2 cut(s) 215, 249
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HinfI GANTC 1 cut(s) 104
HpaI GTTAAC 1 cut(s) 387
Hpy166II GTNNAC 3 cut(s) 108, 260, 387
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 2 cut(s) 221, 287
Hpy8I GTNNAC 3 cut(s) 108, 260, 387
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 2 cut(s) 264, 340
HpyCH4V TGCA 3 cut(s) 124, 234, 325
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 2 cut(s) 215, 249
Ksp22I TGATCA 1 cut(s) 394
KspAI GTTAAC 1 cut(s) 387
Kzo9I GATC 3 cut(s) 217, 223, 394
LguI GCTCTTC 1 cut(s) 18
LpnPI CCDG 6 cut(s) 96, 177, 181, 318, 329, 345
Lsp1109I GCAGC 1 cut(s) 309
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 59
MalI GATC 3 cut(s) 219, 225, 396
MboI GATC 3 cut(s) 217, 223, 394
MboII GAAGA 2 cut(s) 35, 79
MluCI AATT 2 cut(s) 158, 421
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 2 cut(s) 13, 391
MnlI CCTC 3 cut(s) 60, 63, 379
MseI TTAA 3 cut(s) 99, 357, 386
MspCI CTTAAG 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 1 cut(s) 333
NdeII GATC 3 cut(s) 217, 223, 394
NlaIII CATG 2 cut(s) 215, 249
NlaIV GGNNCC 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 18
PctI GAATGC 1 cut(s) 325
PkrI GCNGC 2 cut(s) 116, 324
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PsiI TTATAA 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 77
RsaI GTAC 2 cut(s) 209, 337
RsaNI GTAC 2 cut(s) 208, 336
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 3 cut(s) 99, 357, 386
SatI GCNGC 2 cut(s) 115, 323
Sau3AI GATC 3 cut(s) 217, 223, 394
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 333
SetI ASST 2 cut(s) 30, 371
SfaNI GCATC 1 cut(s) 133
SmlI CTYRAG 2 cut(s) 285, 356
SmoI CTYRAG 2 cut(s) 285, 356
SpeI ACTAGT 1 cut(s) 406
Sse9I AATT 2 cut(s) 158, 421
SsiI CCGC 2 cut(s) 114, 237
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 264, 340
TasI AATT 2 cut(s) 158, 421
TauI GCSGC 1 cut(s) 117
Tru1I TTAA 3 cut(s) 99, 357, 386
Tru9I TTAA 3 cut(s) 99, 357, 386
TseI GCWGC 1 cut(s) 322
TspDTI ATGAA 3 cut(s) 36, 300, 312
Vha464I CTTAAG 1 cut(s) 356
XapI RAATTY 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 107
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.