Rh3BG068500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000237
Physical Location & Seq
Reverse (-)
4629147 .. 4629618
472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG068500.1

Sequence Viewer

Length: 348 bp
ATGTATGGCTCGACAACTGAACACAACGTCCTACATGAGAAAGAAAACAAAATCTTTGATATTGTCCCTATAGATGTAAGATGTTCTCTTAATTGCTTCCTTGGAAACTTTGATTCAAAGTTATCTCTGGAAACACACAAACATTGTTTCAAGTTTGAAGTTGGAAGGATGGACAATCAAAGTGATTGCGGCACGAGTGTGATATTTCTGGTTTTGGTGGTGGCTGCTTTCATCCTCTTCCTGCCATTGGTCATGGGTCCGCTGCACCCACCGTCCTTTGCTGTTCTGCACATATTTCCGGTGGTGCTGGTGGCGATTTTCATTTTCCTCCACCAAGCCTCCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.97

Weight (kDa)

6.35

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 189, 260
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 3 cut(s) 117, 151, 158
AjnI CCWGG 1 cut(s) 341
AleI CACNNNNGTG 1 cut(s) 197
AloI GAACNNNNNNTCC 2 cut(s) 12, 44
ApeKI GCWGC 2 cut(s) 224, 262
AspS9I GGNCC 1 cut(s) 257
AvaII GGWCC 1 cut(s) 257
BauI CACGAG 1 cut(s) 193
BbvI GCAGC 2 cut(s) 211, 249
BccI CCATC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 343
BfmI CTRYAG 1 cut(s) 69
BisI GCNGC 3 cut(s) 190, 225, 263
BlsI GCNGC 3 cut(s) 191, 226, 264
Bme1390I CCNGG 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 343
BpmI CTGGAG 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 298
BsaXI ACNNNNNCTCC 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 247
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 2 cut(s) 174, 231
BseLI CCNNNNNNNGG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 211, 249
BsgI GTGCAG 2 cut(s) 248, 272
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 50
BspACI CCGC 2 cut(s) 189, 260
BspLI GGNNCC 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 100
BssSI CACGAG 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 1 cut(s) 273
Bst6I CTCTTC 1 cut(s) 242
BstF5I GGATG 2 cut(s) 174, 231
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 211, 249
BtsCI GGATG 2 cut(s) 174, 231
Cfr13I GGNCC 1 cut(s) 257
CviAII CATG 2 cut(s) 35, 253
CviJI RGCY 3 cut(s) 9, 224, 338
CviKI_1 RGCY 3 cut(s) 9, 224, 338
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 2 cut(s) 38, 256
FaiI YATR 5 cut(s) 6, 36, 71, 254, 293
FaqI GGGAC 1 cut(s) 50
FatI CATG 2 cut(s) 34, 252
Fnu4HI GCNGC 3 cut(s) 190, 225, 263
FokI GGATG 2 cut(s) 181, 218
Fsp4HI GCNGC 3 cut(s) 190, 225, 263
GluI GCNGC 3 cut(s) 190, 225, 263
GsuI CTGGAG 1 cut(s) 325
HapII CCGG 1 cut(s) 299
Hin1II CATG 2 cut(s) 38, 256
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 299
Hpy188III TCNNGA 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 265, 289
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 38, 256
LpnPI CCDG 6 cut(s) 113, 194, 254, 293, 312, 328
Lsp1109I GCAGC 2 cut(s) 211, 249
MaeII ACGT 1 cut(s) 27
MboII GAAGA 1 cut(s) 229
MluCI AATT 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 2 cut(s) 245, 338
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 343
MvaI CCWGG 1 cut(s) 343
NlaIII CATG 2 cut(s) 38, 256
NlaIV GGNNCC 1 cut(s) 258
OliI CACNNNNGTG 1 cut(s) 197
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 3 cut(s) 191, 226, 264
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 3 cut(s) 190, 225, 263
Sau96I GGNCC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 343
SetI ASST 2 cut(s) 30, 347
SfcI CTRYAG 1 cut(s) 69
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 197
Sse9I AATT 1 cut(s) 91
SsiI CCGC 2 cut(s) 189, 260
StyD4I CCNGG 1 cut(s) 341
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 273
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 11
TasI AATT 1 cut(s) 91
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseI GCWGC 2 cut(s) 224, 262
TspDTI ATGAA 2 cut(s) 220, 310
VpaK11BI GGWCC 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.