RLG00000009577

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000237
Physical Location & Seq
Reverse (-)
54845943 .. 54846754
812 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009577

Sequence Viewer

Length: 405 bp
ATGGACAGAAAGCCTCGGAATTGCTGGTCAGCAGAACTATCGAAGAGTGCCCAGAAGATGCTGTTAAAGCTGCAGCGGTGGGAAGTGAAGAAGAAGAGAGAGGGAGAGCGAAAGCGAAAGCGAAAGGATAGGGAGGAGACTGCCGAGTTTGAGCGAAGAGAAGAGAGGTTGAAGATGATAGAGTCCAGGAAAAGGTTGAGAAAAGAGAGAATGGACAAGAGGATGGACAACTATCAAACTGATTACGGGATGATTGTTATTCTTCTGGCCTTGGTGGTGGTCGGTTCTGTTCTTTTTCTGCCCCTGCTCATCGGTCCTCTGCAGCCCCCGTCCGTCGCTGTTATGCTTATAATCCCAGTGGTTCTGGTTGCAGTTTTGATCTTCCTTCACCAAGCGTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.87

Weight (kDa)

10.34

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
AciI CCGC 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 131
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 3 cut(s) 70, 73, 322
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 380
AvaII GGWCC 1 cut(s) 314
BaeGI GKGCMC 1 cut(s) 52
BbvI GCAGC 3 cut(s) 57, 85, 334
BccI CCATC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 21, 55
BciT130I CCWGG 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 131
BfmI CTRYAG 2 cut(s) 71, 320
BisI GCNGC 3 cut(s) 71, 74, 323
BlsI GCNGC 3 cut(s) 72, 75, 324
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmrFI CCNGG 1 cut(s) 187
BmrI ACTGGG 1 cut(s) 350
BmsI GCATC 1 cut(s) 48
BmuI ACTGGG 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 14, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 356
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 2 cut(s) 14, 270
BseGI GGATG 2 cut(s) 228, 255
BseLI CCNNNNNNNGG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 356
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 52
BseXI GCAGC 3 cut(s) 57, 85, 334
BshFI GGCC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 378
BspACI CCGC 1 cut(s) 76
BspANI GGCC 1 cut(s) 269
BspMAI CTGCAG 2 cut(s) 75, 324
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 2 cut(s) 14, 270
BssMI GATC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 187
Bst6I CTCTTC 4 cut(s) 38, 89, 151, 156
BstF5I GGATG 2 cut(s) 228, 255
BstKTI GATC 1 cut(s) 381
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 1 cut(s) 378
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 2 cut(s) 71, 320
BstSLI GKGCMC 1 cut(s) 52
BstV1I GCAGC 3 cut(s) 57, 85, 334
BsuRI GGCC 1 cut(s) 269
BtsCI GGATG 2 cut(s) 228, 255
BtsIMutI CAGTG 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 314
CseI GACGC 1 cut(s) 384
CviJI RGCY 4 cut(s) 13, 70, 269, 325
CviKI_1 RGCY 4 cut(s) 13, 70, 269, 325
DpnI GATC 1 cut(s) 380
DpnII GATC 1 cut(s) 378
Eam1104I CTCTTC 4 cut(s) 38, 89, 151, 156
EarI CTCTTC 4 cut(s) 38, 89, 151, 156
Eco130I CCWWGG 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaiI YATR 2 cut(s) 344, 350
Fnu4HI GCNGC 3 cut(s) 71, 74, 323
FokI GGATG 2 cut(s) 235, 262
Fsp4HI GCNGC 3 cut(s) 71, 74, 323
GluI GCNGC 3 cut(s) 71, 74, 323
HaeIII GGCC 1 cut(s) 269
HgaI GACGC 1 cut(s) 384
HinfI GANTC 1 cut(s) 182
HphI GGTGA 1 cut(s) 380
Hpy188I TCNGA 1 cut(s) 18
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 395
HpyCH4V TGCA 3 cut(s) 73, 322, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
Kzo9I GATC 1 cut(s) 378
LpnPI CCDG 8 cut(s) 10, 65, 172, 199, 251, 317, 350, 369
Lsp1109I GCAGC 3 cut(s) 57, 85, 334
LweI GCATC 1 cut(s) 48
MalI GATC 1 cut(s) 380
MboI GATC 1 cut(s) 378
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 1 cut(s) 19
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 6 cut(s) 24, 94, 127, 159, 213, 327
MseI TTAA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 76
MspR9I CCNGG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeII GATC 1 cut(s) 378
NmeAIII GCCGAG 1 cut(s) 169
PfoI TCCNGGA 1 cut(s) 185
PkrI GCNGC 3 cut(s) 72, 75, 324
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PsiI TTATAA 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspPI GGNCC 1 cut(s) 314
PstI CTGCAG 2 cut(s) 75, 324
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 3 cut(s) 71, 74, 323
Sau3AI GATC 1 cut(s) 378
Sau96I GGNCC 1 cut(s) 314
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 1 cut(s) 52
SetI ASST 3 cut(s) 72, 170, 197
SfaNI GCATC 1 cut(s) 48
SfcI CTRYAG 2 cut(s) 71, 320
SinI GGWCC 1 cut(s) 314
Sse9I AATT 1 cut(s) 19
SsiI CCGC 1 cut(s) 76
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 270
TaqI TCGA 1 cut(s) 41
TaqII GACCGA 1 cut(s) 302
TasI AATT 1 cut(s) 19
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 363
TseI GCWGC 3 cut(s) 70, 73, 322
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 1 cut(s) 363
VpaK11BI GGWCC 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.