FvH4_3g00321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000237
Physical Location & Seq
Forward (+)
192487 .. 193094
608 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00321.t1

Sequence Viewer

Length: 381 bp
ATGGGCTTTCAATCAGTGGGCTTTTGTGGCCCATTTGTCAAACGGAAACGGGGAAACGGGGATCTTCCCCAAACGTCGCAACCCTACACCAAAAGGTATCATGGACCTTATTTATACACCAACGTCGACCATGGAGTTTCTCACCCCGTCCCGGCGAGCTTTGATTCAGATATTGTACTCCGAGAAACACATACGTTGCCATTTGAACTTGGAAGGACGGATATGATTGTTTTAATGGTGTTTCTGCTGATAGTCGCTACCATCTTGCTCGTGCCTCTGGGGATGGGGCCTGTGCAGCCCCCGTCCTTCGCTGCACTGCTCTTTATTCCAGTGATTTTGGTTGCGCTTCTCATAATTGTTCATCATCAGGCATCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.88

Weight (kDa)

8.89

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AclWI GGATC 1 cut(s) 69
AfaI GTAC 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 2 cut(s) 11, 206
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
AlwI GGATC 1 cut(s) 69
AoxI GGCC 2 cut(s) 28, 287
ApeKI GCWGC 2 cut(s) 295, 311
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 3 cut(s) 29, 104, 287
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 104
BauI CACGAG 1 cut(s) 269
BbvI GCAGC 2 cut(s) 298, 307
BccI CCATC 2 cut(s) 269, 277
BcnI CCSGG 1 cut(s) 152
BisI GCNGC 2 cut(s) 296, 312
BlsI GCNGC 2 cut(s) 297, 313
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 3 cut(s) 29, 104, 287
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 2 cut(s) 288, 371
BseLI CCNNNNNNNGG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 329
BseXI GCAGC 2 cut(s) 298, 307
BsgI GTGCAG 2 cut(s) 297, 314
BshFI GGCC 2 cut(s) 30, 289
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 2 cut(s) 30, 289
Bsp143I GATC 1 cut(s) 61
Bsp19I CCATGG 1 cut(s) 130
BspANI GGCC 2 cut(s) 30, 289
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 1 cut(s) 61
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 130
Bst2BI CACGAG 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 157
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 2 cut(s) 288, 371
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 2 cut(s) 27, 295
BstSCI CCNGG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 298, 307
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 2 cut(s) 30, 289
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 2 cut(s) 288, 371
BtsI GCAGTG 1 cut(s) 314
BtsIMutI CAGTG 3 cut(s) 21, 314, 336
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 3 cut(s) 29, 104, 287
Csp6I GTAC 1 cut(s) 176
CviAII CATG 2 cut(s) 101, 131
CviJI RGCY 6 cut(s) 6, 21, 30, 159, 289, 298
CviKI_1 RGCY 6 cut(s) 6, 21, 30, 159, 289, 298
CviQI GTAC 1 cut(s) 176
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 2 cut(s) 104, 134
FaiI YATR 6 cut(s) 102, 115, 132, 192, 224, 353
FaqI GGGAC 1 cut(s) 134
FatI CATG 2 cut(s) 100, 130
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 296, 312
FokI GGATG 2 cut(s) 295, 358
Fsp4HI GCNGC 2 cut(s) 296, 312
GlaI GCGC 1 cut(s) 345
GluI GCNGC 2 cut(s) 296, 312
HaeIII GGCC 2 cut(s) 30, 289
HapII CCGG 1 cut(s) 152
HhaI GCGC 1 cut(s) 346
Hin1II CATG 2 cut(s) 104, 134
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 1 cut(s) 164
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 169, 182
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 2 cut(s) 79, 128
HpyAV CCTTC 2 cut(s) 207, 316
HpyCH4IV ACGT 3 cut(s) 74, 123, 194
HpyCH4V TGCA 2 cut(s) 295, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 295
HpySE526I ACGT 3 cut(s) 74, 123, 194
Hsp92II CATG 2 cut(s) 104, 134
HspAI GCGC 1 cut(s) 344
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 5 cut(s) 165, 263, 303, 342, 353
Lsp1109I GCAGC 2 cut(s) 298, 307
MaeII ACGT 3 cut(s) 74, 123, 194
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 1 cut(s) 56
MflI RGATCY 1 cut(s) 61
MluCI AATT 1 cut(s) 354
MnlI CCTC 1 cut(s) 285
MseI TTAA 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 376
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 27, 295
NciI CCSGG 1 cut(s) 152
NcoI CCATGG 1 cut(s) 130
NdeII GATC 1 cut(s) 61
NlaIII CATG 2 cut(s) 104, 134
NlaIV GGNNCC 1 cut(s) 288
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 2 cut(s) 297, 313
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 3 cut(s) 29, 104, 287
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 376
SalI GTCGAC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 2 cut(s) 296, 312
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 3 cut(s) 29, 104, 287
ScrFI CCNGG 1 cut(s) 152
SetI ASST 6 cut(s) 77, 98, 109, 126, 161, 197
SinI GGWCC 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 376
Sse9I AATT 1 cut(s) 354
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 130
TaiI ACGT 3 cut(s) 77, 126, 197
TaqI TCGA 1 cut(s) 126
TasI AATT 1 cut(s) 354
TatI WGTACW 1 cut(s) 175
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 3 cut(s) 21, 321, 336
TseI GCWGC 2 cut(s) 295, 311
TspDTI ATGAA 1 cut(s) 350
TspGWI ACGGA 2 cut(s) 58, 233
TspRI CASTG 3 cut(s) 21, 321, 336
VpaK11BI GGWCC 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.