Rw5G036550

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000237
Physical Location & Seq
Forward (+)
64104374 .. 64104904
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G036550.1

Sequence Viewer

Length: 531 bp
ATGTGGTTTCCATCAATTGGTAAGTTCCTACCCGGTGTATACTGCAATGGGAGGATTCATTGGCTCAGCGCGTTTTGTTGGTTGGTTCACTATGACATAGATGAAGGGCATTATGGAGTGGTGGATGAGCTGGGTGCTCCCGCTTTTTCGGTGGAGAAGGAATACATGTGTTTTGGGGAGTCTGGTGGCCGTTTGCATCTTATTGAAATGTATGGGAGTGATCTAAACAAGCTTCATGTGCTGGAGATGGGGAAGGACTACTCTGGCTGGTTTGTCAAGTACCGGGTTGATCTTAATCTCATGACTCCCTACTTTCCTTATACTCCTGCTGCTTCCTGTCGTCCATTTTTCTTTCTTGATGCAGAGGAAAACGAGGAACAGAATCCTGTTCTTGTGCTGCGCATAGGTTATAAGTTCATCTCCTATGACATCAGGGATAAGAGCTGTAAGACACTCTGTGATTTGTTCATACCTTCGCTGGTTGGATGGAGAGATGCCTATCAATATATGGAGACTTTGGCTTGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

176

Amino Acids

20.44

Weight (kDa)

5.04

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
Acc16I TGCGCA 1 cut(s) 401
AccB7I CCANNNNNTGG 1 cut(s) 17
AccI GTMKAC 1 cut(s) 39
AccII CGCG 1 cut(s) 71
AciI CCGC 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 187
AdeI CACNNNGTG 1 cut(s) 458
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 17
AflIII ACRYGT 1 cut(s) 165
AgsI TTSAA 1 cut(s) 206
AluBI AGCT 3 cut(s) 130, 232, 444
AluI AGCT 3 cut(s) 130, 232, 444
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 506
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 329, 397
AspLEI GCGC 2 cut(s) 71, 402
AsuC2I CCSGG 2 cut(s) 33, 284
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 316, 384
BccI CCATC 3 cut(s) 19, 241, 480
BceAI ACGGC 1 cut(s) 174
BcnI CCSGG 2 cut(s) 33, 284
BcoDI GTCTC 1 cut(s) 506
BisI GCNGC 2 cut(s) 330, 398
BlpI GCTNAGC 1 cut(s) 65
BlsI GCNGC 2 cut(s) 331, 399
Bme1390I CCNGG 2 cut(s) 33, 284
BmrFI CCNGG 2 cut(s) 33, 284
BmsI GCATC 3 cut(s) 205, 349, 484
BpmI CTGGAG 1 cut(s) 263
Bpu1102I GCTNAGC 1 cut(s) 65
BpuMI CCSGG 2 cut(s) 33, 284
BsaBI GATNNNNATC 2 cut(s) 294, 498
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 52
Bse8I GATNNNNATC 2 cut(s) 294, 498
BseGI GGATG 2 cut(s) 130, 491
BseJI GATNNNNATC 2 cut(s) 294, 498
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 79
BseXI GCAGC 2 cut(s) 316, 384
BseYI CCCAGC 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 2 cut(s) 33, 283
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 506
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 2 cut(s) 220, 289
Bsp1720I GCTNAGC 1 cut(s) 65
BspACI CCGC 1 cut(s) 141
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 1 cut(s) 71
BspHI TCATGA 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 52
BssMI GATC 2 cut(s) 220, 289
BssNAI GTATAC 1 cut(s) 40
Bst1107I GTATAC 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 2 cut(s) 130, 491
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 2 cut(s) 71, 402
BstKTI GATC 2 cut(s) 223, 292
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 2 cut(s) 220, 289
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 2 cut(s) 31, 282
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 316, 384
BstZ17I GTATAC 1 cut(s) 40
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 130, 491
CciI TCATGA 1 cut(s) 300
CfoI GCGC 2 cut(s) 71, 402
Csp6I GTAC 1 cut(s) 280
CviAII CATG 3 cut(s) 166, 236, 301
CviJI RGCY 7 cut(s) 64, 130, 189, 232, 267, 444, 521
CviKI_1 RGCY 7 cut(s) 64, 130, 189, 232, 267, 444, 521
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 65
DpnI GATC 2 cut(s) 222, 291
DpnII GATC 2 cut(s) 220, 289
DraIII CACNNNGTG 1 cut(s) 458
EaeI YGGCCR 1 cut(s) 187
FaeI CATG 3 cut(s) 169, 239, 304
FatI CATG 3 cut(s) 165, 235, 300
FauI CCCGC 1 cut(s) 148
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 330, 398
FokI GGATG 2 cut(s) 137, 498
Fsp4HI GCNGC 2 cut(s) 330, 398
FspI TGCGCA 1 cut(s) 401
GlaI GCGC 2 cut(s) 70, 401
GluI GCNGC 2 cut(s) 330, 398
GsaI CCCAGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 1 cut(s) 189
HapII CCGG 2 cut(s) 33, 283
HhaI GCGC 2 cut(s) 71, 402
Hin1II CATG 3 cut(s) 169, 239, 304
Hin6I GCGC 2 cut(s) 69, 400
HinP1I GCGC 2 cut(s) 69, 400
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 4 cut(s) 55, 179, 304, 382
HpaII CCGG 2 cut(s) 33, 283
Hpy166II GTNNAC 2 cut(s) 40, 88
Hpy188III TCNNGA 2 cut(s) 301, 356
Hpy8I GTNNAC 2 cut(s) 40, 88
HpyAV CCTTC 4 cut(s) 98, 151, 247, 483
HpyCH4V TGCA 3 cut(s) 45, 196, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 1 cut(s) 65
Hsp92II CATG 3 cut(s) 169, 239, 304
HspAI GCGC 2 cut(s) 69, 400
Kzo9I GATC 2 cut(s) 220, 289
LmnI GCTCC 1 cut(s) 142
Lsp1109I GCAGC 2 cut(s) 316, 384
LweI GCATC 3 cut(s) 205, 349, 484
MalI GATC 2 cut(s) 222, 291
MboI GATC 2 cut(s) 220, 289
MfeI CAATTG 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 1 cut(s) 15
MlyI GAGTC 2 cut(s) 188, 298
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 3 cut(s) 45, 358, 367
MseI TTAA 1 cut(s) 294
MspI CCGG 2 cut(s) 33, 283
MspR9I CCNGG 2 cut(s) 33, 284
MunI CAATTG 1 cut(s) 15
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 238
NciI CCSGG 2 cut(s) 33, 284
NdeII GATC 2 cut(s) 220, 289
NlaIII CATG 3 cut(s) 169, 239, 304
NsbI TGCGCA 1 cut(s) 401
NspI RCATGY 1 cut(s) 169
PagI TCATGA 1 cut(s) 300
PciI ACATGT 1 cut(s) 165
PfeI GAWTC 2 cut(s) 55, 382
PflMI CCANNNNNTGG 1 cut(s) 17
PkrI GCNGC 2 cut(s) 331, 399
PleI GAGTC 2 cut(s) 187, 298
PpsI GAGTC 2 cut(s) 187, 298
PscI ACATGT 1 cut(s) 165
PsiI TTATAA 1 cut(s) 411
PspFI CCCAGC 1 cut(s) 130
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 2 cut(s) 330, 398
Sau3AI GATC 2 cut(s) 220, 289
SchI GAGTC 2 cut(s) 188, 298
ScrFI CCNGG 2 cut(s) 33, 284
SduI GDGCHC 1 cut(s) 139
SetI ASST 5 cut(s) 132, 234, 409, 446, 475
SfaNI GCATC 3 cut(s) 205, 349, 484
Sse9I AATT 1 cut(s) 15
SsiI CCGC 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 31, 282
TasI AATT 1 cut(s) 15
TfiI GAWTC 2 cut(s) 55, 382
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseI GCWGC 2 cut(s) 329, 397
TspDTI ATGAA 5 cut(s) 47, 117, 224, 406, 457
Van91I CCANNNNNTGG 1 cut(s) 17
XceI RCATGY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.