FvH4_3g32490

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000237
Physical Location & Seq
Forward (+)
27762234 .. 27763620
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32490.t1

Sequence Viewer

Length: 1125 bp
ATGCAGAGTCTCTCACTCTCAGCAGCAGCAGCAGAAACAATAGGTAACAACGAAGACCTCCTCAAACAGCTCCTCCTTTGGATACCAGCCAAACCACTCATCCGCTTCAAATGCGTCTCTAAACTCTGGCTCTCTCTCATCTCCGACCCCCAATTCTGCCACTCCCACACCCTCCTCAACCCTAACCCTAAATTCCCCTCCGCCTTCTTCTTCAGCCCAACCGCCGCAACACACCCCCACTTCATCTCCCTCCTCCCTAACCCAAACCCACCCACGCCTCTCAGTTTCATCCCTGACCCAAAAAACCTCAAGATCCTCCAGTCCTGCAATGGCTTGCTCCTCTGTACTGATGGCCTCTCAGTCCCTACCAAATTCTATGTCGTCAATCCCACAACTAGCCGATTCTCTGAAATTGCTCTTCCTAAAACGCCATGTACCCTCTTGAGTCTTGCTTTGGCTTTTGACCCTTCCAAATCTCCTCATTTTAAGCTGGTTTCCGTTTCGGGGTCCCGTGCCGTTCATTCCACGCTTCGAAACATTGGGATTGAGATATACTCGTCTCGGACTCGAACCTGGAGGACCTGTGAGTCTACTGTTATGTGGTTCCCTTCGTCGCAGAAGTTCTTACCCTGTGTATACTGCAATGGGAGGATTAATTGGCTGAGCACGTTTTGTTGGTTGGTTCACTACGACATAGATGAAGGGCATTATGGAGTGGTGGATGGAATTATTGGTCACCCATTTTCGGATTGTGAATACTCATGTTTTGGGGAGTCTGGTGGCCGTTTGCATCTTATTGAAGTGGATGGGAGTGATCTAAACCAGCTTGGTGTGCTGGAGATGGGGAAGGACTACTCTGGTTGGTTTCTTAAGTACCAGGTTGATCTTAGTCGAGTGAGACCTGCATTTCCTTCTTCTACTCGCCCAATGTGTTGTCCATTTTTGTTTCTTGATGTGGAGGAAAATGAGGAACAAGATCCAGTCCTTTTGCTGCACATTGGTCATAAGGTCGTCTCCTTTAACACCAGGGATAAGAGGTTCAAGACGCACTGTAACCTGAACACACCTTCGCTAGTTGGATGGAGAGATGCTTATCCATATATGGAGACTCTGGCTTGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

375

Amino Acids

42.01

Weight (kDa)

7.16

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 102 - 222 4e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 586
Acc36I ACCTGC 1 cut(s) 910
AccI GTMKAC 2 cut(s) 590, 636
AciI CCGC 4 cut(s) 103, 201, 222, 225
AclWI GGATC 2 cut(s) 307, 971
AcoI YGGCCR 1 cut(s) 781
AcsI RAATTY 2 cut(s) 191, 371
AcuI CTGAAG 1 cut(s) 196
AfaI GTAC 3 cut(s) 346, 436, 875
AfiI CCNNNNNNNGG 2 cut(s) 504, 745
AflII CTTAAG 1 cut(s) 869
AgsI TTSAA 3 cut(s) 109, 800, 1042
AjnI CCWGG 3 cut(s) 572, 876, 1025
AloI GAACNNNNNNTCC 2 cut(s) 1022, 1054
AluBI AGCT 3 cut(s) 70, 490, 826
AluI AGCT 3 cut(s) 70, 490, 826
Alw21I GWGCWC 1 cut(s) 668
Alw26I GTCTC 6 cut(s) 14, 121, 564, 892, 1018, 1100
AlwI GGATC 2 cut(s) 307, 971
AoxI GGCC 2 cut(s) 352, 781
ApeKI GCWGC 4 cut(s) 23, 26, 29, 991
ApoI RAATTY 2 cut(s) 191, 371
ArsI GACNNNNNNTTYG 2 cut(s) 363, 395
AseI ATTAAT 1 cut(s) 654
AspS9I GGNCC 2 cut(s) 507, 579
AsuHPI GGTGA 1 cut(s) 728
AsuII TTCGAA 1 cut(s) 532
AvaII GGWCC 2 cut(s) 507, 579
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 668
BbvI GCAGC 4 cut(s) 35, 38, 41, 978
BccI CCATC 5 cut(s) 344, 716, 800, 835, 1074
BceAI ACGGC 2 cut(s) 500, 768
BciT130I CCWGG 3 cut(s) 574, 878, 1027
BciVI GTATCC 1 cut(s) 75
BcoDI GTCTC 6 cut(s) 14, 121, 564, 892, 1018, 1100
BfaI CTAG 2 cut(s) 396, 1073
BfrI CTTAAG 1 cut(s) 869
BfuAI ACCTGC 1 cut(s) 910
BfuI GTATCC 1 cut(s) 75
BisI GCNGC 5 cut(s) 24, 27, 30, 225, 992
BlpI GCTNAGC 1 cut(s) 662
BlsI GCNGC 5 cut(s) 25, 28, 31, 226, 993
Bme1390I CCNGG 3 cut(s) 574, 878, 1027
Bme18I GGWCC 2 cut(s) 507, 579
BmgT120I GGNCC 2 cut(s) 507, 579
BmiI GGNNCC 3 cut(s) 508, 509, 605
BmrFI CCNGG 3 cut(s) 574, 878, 1027
BmsI GCATC 2 cut(s) 799, 1078
BpiI GAAGAC 1 cut(s) 60
BplI GAGNNNNNCTC 2 cut(s) 539, 571
BpmI CTGGAG 3 cut(s) 302, 595, 857
Bpu1102I GCTNAGC 1 cut(s) 662
Bpu14I TTCGAA 1 cut(s) 532
BpuEI CTTGAG 2 cut(s) 293, 463
BsaBI GATNNNNATC 1 cut(s) 1092
BsaI GGTCTC 1 cut(s) 892
BsaJI CCNNGG 1 cut(s) 1026
BsaXI ACNNNNNCTCC 6 cut(s) 57, 87, 230, 260, 568, 598
Bsc4I CCNNNNNNNGG 2 cut(s) 504, 745
Bse1I ACTGG 2 cut(s) 319, 980
Bse3DI GCAATG 2 cut(s) 334, 649
Bse8I GATNNNNATC 1 cut(s) 1092
BseBI CCWGG 3 cut(s) 574, 878, 1027
BseDI CCNNGG 1 cut(s) 1026
BseGI GGATG 5 cut(s) 99, 288, 727, 811, 1085
BseJI GATNNNNATC 1 cut(s) 1092
BseLI CCNNNNNNNGG 2 cut(s) 504, 745
BseMI GCAATG 2 cut(s) 334, 649
BseMII CTCAG 4 cut(s) 33, 295, 372, 653
BseNI ACTGG 2 cut(s) 319, 980
BseRI GAGGAG 6 cut(s) 50, 62, 164, 242, 329, 468
BseXI GCAGC 4 cut(s) 35, 38, 41, 978
BsgI GTGCAG 1 cut(s) 977
BshFI GGCC 2 cut(s) 354, 783
BsiHKAI GWGCWC 1 cut(s) 668
BslFI GGGAC 2 cut(s) 347, 493
BslI CCNNNNNNNGG 2 cut(s) 504, 745
BsmAI GTCTC 6 cut(s) 14, 121, 564, 892, 1018, 1100
BsmBI CGTCTC 3 cut(s) 121, 564, 1018
BsmFI GGGAC 2 cut(s) 347, 493
BsnI GGCC 2 cut(s) 354, 783
Bso31I GGTCTC 1 cut(s) 892
Bsp119I TTCGAA 1 cut(s) 532
Bsp1286I GDGCHC 1 cut(s) 668
Bsp143I GATC 4 cut(s) 312, 814, 883, 976
Bsp1720I GCTNAGC 1 cut(s) 662
BspACI CCGC 4 cut(s) 103, 201, 222, 225
BspANI GGCC 2 cut(s) 354, 783
BspCNI CTCAG 4 cut(s) 32, 294, 371, 654
BspLI GGNNCC 3 cut(s) 508, 509, 605
BspMI ACCTGC 1 cut(s) 910
BspPI GGATC 2 cut(s) 307, 971
BspQI GCTCTTC 1 cut(s) 423
BspT104I TTCGAA 1 cut(s) 532
BspTI CTTAAG 1 cut(s) 869
BspTNI GGTCTC 1 cut(s) 892
BsrDI GCAATG 2 cut(s) 334, 649
BsrI ACTGG 2 cut(s) 319, 980
BssECI CCNNGG 1 cut(s) 1026
BssMI GATC 4 cut(s) 312, 814, 883, 976
BssNAI GTATAC 1 cut(s) 637
Bst1107I GTATAC 1 cut(s) 637
Bst2UI CCWGG 3 cut(s) 574, 878, 1027
Bst4CI ACNGT 2 cut(s) 595, 1052
Bst6I CTCTTC 1 cut(s) 423
BstAFI CTTAAG 1 cut(s) 869
BstBI TTCGAA 1 cut(s) 532
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 5 cut(s) 19, 281, 358, 662, 887
BstEII GGTNACC 1 cut(s) 734
BstF5I GGATG 5 cut(s) 99, 288, 727, 811, 1085
BstKTI GATC 4 cut(s) 315, 817, 886, 979
BstMAI GTCTC 6 cut(s) 14, 121, 564, 892, 1018, 1100
BstMBI GATC 4 cut(s) 312, 814, 883, 976
BstMWI GCNNNNNNNGC 3 cut(s) 29, 111, 832
BstNI CCWGG 3 cut(s) 574, 878, 1027
BstPI GGTNACC 1 cut(s) 734
BstSCI CCNGG 3 cut(s) 572, 876, 1025
BstV1I GCAGC 4 cut(s) 35, 38, 41, 978
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 2 cut(s) 312, 976
BstYI RGATCY 2 cut(s) 312, 976
BstZ17I GTATAC 1 cut(s) 637
BsuI GTATCC 1 cut(s) 75
BsuRI GGCC 2 cut(s) 354, 783
BtsCI GGATG 5 cut(s) 99, 288, 727, 811, 1085
BtsIMutI CAGTG 1 cut(s) 1048
BveI ACCTGC 1 cut(s) 910
Cac8I GCNNGC 1 cut(s) 335
Cfr13I GGNCC 2 cut(s) 507, 579
CseI GACGC 2 cut(s) 103, 1054
CsiI ACCWGGT 1 cut(s) 876
Csp6I GTAC 3 cut(s) 345, 435, 874
CviAII CATG 2 cut(s) 432, 762
CviQI GTAC 3 cut(s) 345, 435, 874
DdeI CTNAG 5 cut(s) 19, 281, 358, 662, 887
DpnI GATC 4 cut(s) 314, 816, 885, 978
DpnII GATC 4 cut(s) 312, 814, 883, 976
DrdI GACNNNNNNGTC 1 cut(s) 586
DseDI GACNNNNNNGTC 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 781
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
EciI GGCGGA 1 cut(s) 190
Eco31I GGTCTC 1 cut(s) 892
Eco47I GGWCC 2 cut(s) 507, 579
Eco57I CTGAAG 1 cut(s) 196
Eco91I GGTNACC 1 cut(s) 734
EcoO109I RGGNCCY 2 cut(s) 507, 579
EcoO65I GGTNACC 1 cut(s) 734
EcoRII CCWGG 3 cut(s) 572, 876, 1025
Esp3I CGTCTC 3 cut(s) 121, 564, 1018
FaeI CATG 2 cut(s) 435, 765
FaqI GGGAC 2 cut(s) 347, 493
FatI CATG 2 cut(s) 431, 761
FblI GTMKAC 2 cut(s) 590, 636
Fnu4HI GCNGC 5 cut(s) 24, 27, 30, 225, 992
FokI GGATG 5 cut(s) 86, 275, 734, 818, 1092
Fsp4HI GCNGC 5 cut(s) 24, 27, 30, 225, 992
FspBI CTAG 2 cut(s) 396, 1073
GluI GCNGC 5 cut(s) 24, 27, 30, 225, 992
GsuI CTGGAG 3 cut(s) 302, 595, 857
HaeIII GGCC 2 cut(s) 354, 783
HgaI GACGC 2 cut(s) 103, 1054
Hin1II CATG 2 cut(s) 435, 765
HinfI GANTC 7 cut(s) 7, 402, 445, 565, 587, 773, 1108
HphI GGTGA 1 cut(s) 728
Hpy166II GTNNAC 3 cut(s) 591, 637, 685
Hpy188I TCNGA 4 cut(s) 145, 409, 564, 748
Hpy188III TCNNGA 4 cut(s) 310, 442, 950, 1042
Hpy8I GTNNAC 3 cut(s) 591, 637, 685
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 7 cut(s) 214, 477, 618, 695, 841, 921, 1077
HpyCH4III ACNGT 2 cut(s) 595, 1052
HpyCH4IV ACGT 1 cut(s) 668
HpyCH4V TGCA 6 cut(s) 4, 327, 642, 790, 905, 994
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 111, 832
HpyF3I CTNAG 5 cut(s) 19, 281, 358, 662, 887
HpySE526I ACGT 1 cut(s) 668
Hsp92II CATG 2 cut(s) 435, 765
KflI GGGWCCC 1 cut(s) 507
Kzo9I GATC 4 cut(s) 312, 814, 883, 976
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 2 cut(s) 75, 342
Lsp1109I GCAGC 4 cut(s) 35, 38, 41, 978
LweI GCATC 2 cut(s) 799, 1078
MabI ACCWGGT 1 cut(s) 876
MaeI CTAG 2 cut(s) 396, 1073
MaeII ACGT 1 cut(s) 668
MaeIII GTNAC 3 cut(s) 44, 734, 1052
MalI GATC 4 cut(s) 314, 816, 885, 978
MboI GATC 4 cut(s) 312, 814, 883, 976
MboII GAAGA 5 cut(s) 65, 199, 202, 410, 906
MflI RGATCY 2 cut(s) 312, 976
MhlI GDGCHC 1 cut(s) 668
MluCI AATT 6 cut(s) 152, 191, 371, 411, 655, 726
MlyI GAGTC 6 cut(s) 16, 454, 559, 596, 782, 1102
MmeI TCCRAC 2 cut(s) 168, 1057
MseI TTAA 4 cut(s) 486, 654, 870, 1020
MspCI CTTAAG 1 cut(s) 869
MspR9I CCNGG 3 cut(s) 574, 878, 1027
MvaI CCWGG 3 cut(s) 574, 878, 1027
MwoI GCNNNNNNNGC 3 cut(s) 29, 111, 832
NdeII GATC 4 cut(s) 312, 814, 883, 976
NlaIII CATG 2 cut(s) 435, 765
NlaIV GGNNCC 3 cut(s) 508, 509, 605
NmuCI GTSAC 1 cut(s) 734
NspV TTCGAA 1 cut(s) 532
PciSI GCTCTTC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 402
PkrI GCNGC 5 cut(s) 25, 28, 31, 226, 993
PleI GAGTC 6 cut(s) 15, 453, 559, 595, 781, 1102
PpsI GAGTC 6 cut(s) 15, 453, 559, 595, 781, 1102
PpuMI RGGWCCY 2 cut(s) 507, 579
PshBI ATTAAT 1 cut(s) 654
Psp5II RGGWCCY 2 cut(s) 507, 579
Psp6I CCWGG 3 cut(s) 572, 876, 1025
PspEI GGTNACC 1 cut(s) 734
PspGI CCWGG 3 cut(s) 572, 876, 1025
PspN4I GGNNCC 3 cut(s) 508, 509, 605
PspPI GGNCC 2 cut(s) 507, 579
PspPPI RGGWCCY 2 cut(s) 507, 579
PsuI RGATCY 2 cut(s) 312, 976
RsaI GTAC 3 cut(s) 346, 436, 875
RsaNI GTAC 3 cut(s) 345, 435, 874
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 4 cut(s) 486, 654, 870, 1020
SatI GCNGC 5 cut(s) 24, 27, 30, 225, 992
Sau3AI GATC 4 cut(s) 312, 814, 883, 976
Sau96I GGNCC 2 cut(s) 507, 579
SchI GAGTC 6 cut(s) 16, 454, 559, 596, 782, 1102
ScrFI CCNGG 3 cut(s) 574, 878, 1027
SduI GDGCHC 1 cut(s) 668
SexAI ACCWGGT 1 cut(s) 876
SfaNI GCATC 2 cut(s) 799, 1078
SfuI TTCGAA 1 cut(s) 532
SinI GGWCC 2 cut(s) 507, 579
SmlI CTYRAG 3 cut(s) 308, 442, 869
SmoI CTYRAG 3 cut(s) 308, 442, 869
Sse9I AATT 6 cut(s) 152, 191, 371, 411, 655, 726
SsiI CCGC 4 cut(s) 103, 201, 222, 225
SspMI CTAG 2 cut(s) 396, 1073
StyD4I CCNGG 3 cut(s) 572, 876, 1025
TaaI ACNGT 2 cut(s) 595, 1052
TaiI ACGT 1 cut(s) 671
TaqI TCGA 3 cut(s) 532, 568, 892
TasI AATT 6 cut(s) 152, 191, 371, 411, 655, 726
TatI WGTACW 1 cut(s) 344
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 402
Tru1I TTAA 4 cut(s) 486, 654, 870, 1020
Tru9I TTAA 4 cut(s) 486, 654, 870, 1020
TscAI CASTG 1 cut(s) 1055
TseFI GTSAC 1 cut(s) 734
TseI GCWGC 4 cut(s) 23, 26, 29, 991
Tsp45I GTSAC 1 cut(s) 734
TspDTI ATGAA 4 cut(s) 232, 277, 509, 714
TspGWI ACGGA 1 cut(s) 487
TspRI CASTG 1 cut(s) 1055
Vha464I CTTAAG 1 cut(s) 869
VpaK11BI GGWCC 2 cut(s) 507, 579
VspI ATTAAT 1 cut(s) 654
XapI RAATTY 2 cut(s) 191, 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XmiI GTMKAC 2 cut(s) 590, 636
XspI CTAG 2 cut(s) 396, 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.