Rmu_sc0015594.1_g000007

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015594.1
OG0000237
Physical Location & Seq
Reverse (-)
25078 .. 25704
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015594.1_g000007.1.cds

Sequence Viewer

Length: 627 bp
atggctgatattcctgataaagaactccattgttgcgcaaaaaggacgaaggttacaggcagcgggaactacctaaaatcctgtagtacaagtagtagcactaacagcagcagtatcagtttagcagaaattatagccagcatggaagaactccttacagaaatcctactgcgggtgccagctcgaactctggtccgcttcaaatgtgtttccaagcattggctctctcttatatctgaccccaaattctgtcaccgccacaccatttggaaccaaaactcctccgtctccgcagtctttggtgacagatccacaaactttttttccatcacttttcctcatgatcatgaccataaccataaccccggatcatcgcgctgcaatcctcttaattttgttcaaaaccaaaatgattgcatcgagattatccactcctgcaatggcctcttcttgtgccatcccatcaatgctacaagtactagtagaaccccatattttgttctcaatcccacaaccaaccagttcttgacacttacaattcccccagctgctgctgctacttctaatggtcaacagatacaaacccatattattggttgtgccttgtcttttgacccttccaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

208

Amino Acids

22.95

Weight (kDa)

8.07

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 175
AccB7I CCANNNNNTGG 1 cut(s) 219
AccII CGCG 1 cut(s) 376
AciI CCGC 5 cut(s) 63, 172, 196, 256, 291
AclWI GGATC 2 cut(s) 303, 376
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 2 cut(s) 88, 478
AfiI CCNNNNNNNGG 2 cut(s) 172, 219
AgsI TTSAA 2 cut(s) 202, 401
AhlI ACTAGT 1 cut(s) 479
AloI GAACNNNNNNTCC 2 cut(s) 263, 295
AluBI AGCT 2 cut(s) 182, 548
AluI AGCT 2 cut(s) 182, 548
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 2 cut(s) 303, 376
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 1 cut(s) 442
ApeKI GCWGC 6 cut(s) 60, 108, 378, 548, 551, 554
ApoI RAATTY 1 cut(s) 245
AspLEI GCGC 2 cut(s) 38, 378
AspS9I GGNCC 1 cut(s) 193
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 2 cut(s) 245, 314
AvaII GGWCC 1 cut(s) 193
BanI GGYRCC 1 cut(s) 175
BbvI GCAGC 6 cut(s) 72, 120, 365, 535, 538, 541
BccI CCATC 3 cut(s) 335, 465, 470
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 292
BcuI ACTAGT 1 cut(s) 479
BfaI CTAG 1 cut(s) 480
BfmI CTRYAG 1 cut(s) 82
BisI GCNGC 6 cut(s) 61, 109, 379, 549, 552, 555
BlsI GCNGC 6 cut(s) 62, 110, 380, 550, 553, 556
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 2 cut(s) 177, 272
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 219
Bse1I ACTGG 1 cut(s) 520
Bse3DI GCAATG 1 cut(s) 445
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 2 cut(s) 172, 219
BseMI GCAATG 1 cut(s) 445
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 271
BseXI GCAGC 6 cut(s) 72, 120, 365, 535, 538, 541
BseYI CCCAGC 1 cut(s) 544
Bsh1236I CGCG 1 cut(s) 376
BshFI GGCC 1 cut(s) 444
BshNI GGYRCC 1 cut(s) 175
BsiSI CCGG 1 cut(s) 366
BslI CCNNNNNNNGG 2 cut(s) 172, 219
BsmAI GTCTC 1 cut(s) 292
BsmBI CGTCTC 1 cut(s) 292
BsnI GGCC 1 cut(s) 444
Bsp143I GATC 3 cut(s) 308, 343, 368
BspACI CCGC 5 cut(s) 63, 172, 196, 256, 291
BspANI GGCC 1 cut(s) 444
BspFNI CGCG 1 cut(s) 376
BspHI TCATGA 2 cut(s) 340, 346
BspLI GGNNCC 2 cut(s) 177, 272
BspPI GGATC 2 cut(s) 303, 376
BspT107I GGYRCC 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 445
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 3 cut(s) 308, 343, 368
Bst6I CTCTTC 1 cut(s) 452
BstC8I GCNNGC 2 cut(s) 139, 180
BstF5I GGATG 1 cut(s) 457
BstFNI CGCG 1 cut(s) 376
BstHHI GCGC 2 cut(s) 38, 378
BstKTI GATC 3 cut(s) 311, 346, 371
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 3 cut(s) 308, 343, 368
BstMWI GCNNNNNNNGC 2 cut(s) 105, 554
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 82
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 6 cut(s) 72, 120, 365, 535, 538, 541
BstX2I RGATCY 1 cut(s) 308
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 1 cut(s) 308
BsuRI GGCC 1 cut(s) 444
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 1 cut(s) 457
Cac8I GCNNGC 2 cut(s) 139, 180
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 2 cut(s) 340, 346
CfoI GCGC 2 cut(s) 38, 378
Cfr13I GGNCC 1 cut(s) 193
Csp6I GTAC 2 cut(s) 87, 477
CspCI CAANNNNNGTGG 2 cut(s) 248, 283
CviAII CATG 3 cut(s) 142, 341, 347
CviJI RGCY 6 cut(s) 5, 137, 182, 223, 444, 548
CviKI_1 RGCY 6 cut(s) 5, 137, 182, 223, 444, 548
CviQI GTAC 2 cut(s) 87, 477
DpnI GATC 3 cut(s) 310, 345, 370
DpnII GATC 3 cut(s) 308, 343, 368
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Eco47I GGWCC 1 cut(s) 193
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 3 cut(s) 145, 344, 350
FaiI YATR 9 cut(s) 134, 143, 233, 342, 348, 354, 360, 493, 588
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 3 cut(s) 141, 340, 346
FauI CCCGC 2 cut(s) 56, 165
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 6 cut(s) 61, 109, 379, 549, 552, 555
FokI GGATG 1 cut(s) 444
Fsp4HI GCNGC 6 cut(s) 61, 109, 379, 549, 552, 555
FspBI CTAG 1 cut(s) 480
FspI TGCGCA 1 cut(s) 37
GlaI GCGC 2 cut(s) 37, 377
GluI GCNGC 6 cut(s) 61, 109, 379, 549, 552, 555
GsaI CCCAGC 1 cut(s) 548
HaeIII GGCC 1 cut(s) 444
HapII CCGG 1 cut(s) 366
HhaI GCGC 2 cut(s) 38, 378
Hin1II CATG 3 cut(s) 145, 344, 350
Hin6I GCGC 2 cut(s) 36, 376
HinP1I GCGC 2 cut(s) 36, 376
HincII GTYRAC 1 cut(s) 572
HindII GTYRAC 1 cut(s) 572
HpaII CCGG 1 cut(s) 366
HphI GGTGA 2 cut(s) 245, 314
Hpy166II GTNNAC 1 cut(s) 572
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 5 cut(s) 14, 341, 347, 421, 526
Hpy8I GTNNAC 1 cut(s) 572
HpyAV CCTTC 2 cut(s) 43, 627
HpyCH4V TGCA 3 cut(s) 381, 417, 438
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 554
Hsp92II CATG 3 cut(s) 145, 344, 350
HspAI GCGC 2 cut(s) 36, 376
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 3 cut(s) 308, 343, 368
Lsp1109I GCAGC 6 cut(s) 72, 120, 365, 535, 538, 541
LweI GCATC 1 cut(s) 426
MaeI CTAG 1 cut(s) 480
MaeIII GTNAC 3 cut(s) 52, 251, 302
MalI GATC 3 cut(s) 310, 345, 370
MboI GATC 3 cut(s) 308, 343, 368
MboII GAAGA 2 cut(s) 158, 439
MflI RGATCY 1 cut(s) 308
MluCI AATT 4 cut(s) 129, 245, 391, 537
MnlI CCTC 4 cut(s) 292, 348, 396, 455
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 2 cut(s) 63, 548
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 366
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 2 cut(s) 105, 554
NciI CCSGG 1 cut(s) 366
NdeII GATC 3 cut(s) 308, 343, 368
NlaIII CATG 3 cut(s) 145, 344, 350
NlaIV GGNNCC 2 cut(s) 177, 272
NmuCI GTSAC 2 cut(s) 251, 302
NsbI TGCGCA 1 cut(s) 37
PagI TCATGA 2 cut(s) 340, 346
PflMI CCANNNNNTGG 1 cut(s) 219
PkrI GCNGC 6 cut(s) 62, 110, 380, 550, 553, 556
PspFI CCCAGC 1 cut(s) 544
PspN4I GGNNCC 2 cut(s) 177, 272
PspPI GGNCC 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 2 cut(s) 88, 478
RsaNI GTAC 2 cut(s) 87, 477
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 6 cut(s) 61, 109, 379, 549, 552, 555
Sau3AI GATC 3 cut(s) 308, 343, 368
Sau96I GGNCC 1 cut(s) 193
ScaI AGTACT 1 cut(s) 478
ScrFI CCNGG 1 cut(s) 366
SetI ASST 4 cut(s) 54, 75, 184, 550
SfaNI GCATC 1 cut(s) 426
SfcI CTRYAG 1 cut(s) 82
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 345
SpeI ACTAGT 1 cut(s) 479
Sse9I AATT 4 cut(s) 129, 245, 391, 537
SsiI CCGC 5 cut(s) 63, 172, 196, 256, 291
SspMI CTAG 1 cut(s) 480
StyD4I CCNGG 1 cut(s) 364
TaqI TCGA 2 cut(s) 184, 420
TasI AATT 4 cut(s) 129, 245, 391, 537
TatI WGTACW 2 cut(s) 86, 476
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TseFI GTSAC 2 cut(s) 251, 302
TseI GCWGC 6 cut(s) 60, 108, 378, 548, 551, 554
Tsp45I GTSAC 2 cut(s) 251, 302
TspGWI ACGGA 1 cut(s) 274
Van91I CCANNNNNTGG 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XspI CTAG 1 cut(s) 480
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.