RchiOBHm_Chr2g0174701

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000237
Physical Location & Seq
Forward (+)
87216863 .. 87217330
468 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54184

Sequence Viewer

Length: 468 bp
ATGGATAGTGAGATGTCGTACTATCACCTAGATGAAGAGCGTGTTGGATTTGTTAATGGTTCTCCTACGCCTTCGGAGAAGAATTTATTTTGGAGGTATTTTTGGGAGTCTCATGGTGGTGGCCATTTGCATCTTATTGATATGTATCGGCCTAATCTTACTGCATTTGAAGTGTTGGAGATGGGGAGAGACTACTCTGGTTGGTTTGTCAAGTACCGTGTTGATCTGGATCCCATATTCTCTACTTACCCGCAGCTTCCATGGTATTTTATTGTTGCTCTCTTTATTGCTCGAGAGGAAACTGAAGGAGAGGAAAGTTCATCTTTGTTGCTGCATATTCCTGGTAAAGTCATCTCTTATAATCTTAGGAGCAATACTTTCAAATCTTTTGAGTTACCTCCTGAGGCCGGCGGTAATGATCCTTGTAACAGAGTTGGCCATCAAAATTTTTGGCTTGTGTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

155

Amino Acids

18.14

Weight (kDa)

4.95

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
AciI CCGC 2 cut(s) 251, 411
AclWI GGATC 3 cut(s) 224, 237, 413
AcoI YGGCCR 2 cut(s) 121, 436
AcsI RAATTY 2 cut(s) 82, 445
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 2 cut(s) 20, 215
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 2 cut(s) 170, 382
AjnI CCWGG 1 cut(s) 340
AjuI GAANNNNNNNTTGG 2 cut(s) 27, 59
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
Alw26I GTCTC 2 cut(s) 114, 183
AlwI GGATC 3 cut(s) 224, 237, 413
Ama87I CYCGRG 1 cut(s) 291
AoxI GGCC 4 cut(s) 121, 149, 405, 436
ApeKI GCWGC 2 cut(s) 253, 331
ApoI RAATTY 2 cut(s) 82, 445
AsuHPI GGTGA 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 291
AxyI CCTNAGG 1 cut(s) 402
BalI TGGCCA 2 cut(s) 123, 438
BamHI GGATCC 1 cut(s) 229
BbvI GCAGC 2 cut(s) 265, 318
BccI CCATC 2 cut(s) 175, 447
BciT130I CCWGG 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 114, 183
BfaI CTAG 1 cut(s) 29
BisI GCNGC 2 cut(s) 254, 332
BlsI GCNGC 2 cut(s) 255, 333
Bme1390I CCNGG 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 139
BsaBI GATNNNNATC 2 cut(s) 144, 228
BsaJI CCNNGG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse118I RCCGGY 1 cut(s) 407
Bse21I CCTNAGG 1 cut(s) 402
Bse8I GATNNNNATC 2 cut(s) 144, 228
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 260
BseJI GATNNNNATC 2 cut(s) 144, 228
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 1 cut(s) 393
BseXI GCAGC 2 cut(s) 265, 318
BshFI GGCC 4 cut(s) 123, 151, 407, 438
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 2 cut(s) 114, 183
BsnI GGCC 4 cut(s) 123, 151, 407, 438
BsoBI CYCGRG 1 cut(s) 291
Bsp143I GATC 3 cut(s) 223, 229, 418
Bsp19I CCATGG 1 cut(s) 260
BspACI CCGC 2 cut(s) 251, 411
BspANI GGCC 4 cut(s) 123, 151, 407, 438
BspCNI CTCAG 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 3 cut(s) 224, 237, 413
BspQI GCTCTTC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 3 cut(s) 223, 229, 418
BssT1I CCWWGG 1 cut(s) 260
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 2 cut(s) 365, 402
BstDSI CCRYGG 1 cut(s) 260
BstKTI GATC 3 cut(s) 226, 232, 421
BstMAI GTCTC 2 cut(s) 114, 183
BstMBI GATC 3 cut(s) 223, 229, 418
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstV1I GCAGC 2 cut(s) 265, 318
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
Bsu36I CCTNAGG 1 cut(s) 402
BsuRI GGCC 4 cut(s) 123, 151, 407, 438
BtgI CCRYGG 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 409
Cfr10I RCCGGY 1 cut(s) 407
Csp6I GTAC 2 cut(s) 19, 214
CviAII CATG 2 cut(s) 113, 261
CviJI RGCY 6 cut(s) 123, 151, 256, 407, 438, 454
CviKI_1 RGCY 6 cut(s) 123, 151, 256, 407, 438, 454
CviQI GTAC 2 cut(s) 19, 214
DdeI CTNAG 2 cut(s) 365, 402
DpnI GATC 3 cut(s) 225, 231, 420
DpnII GATC 3 cut(s) 223, 229, 418
EaeI YGGCCR 2 cut(s) 121, 436
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 324
Eco81I CCTNAGG 1 cut(s) 402
Eco88I CYCGRG 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 2 cut(s) 116, 264
FaiI YATR 6 cut(s) 114, 143, 236, 262, 336, 360
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FatI CATG 2 cut(s) 112, 260
FauI CCCGC 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 254, 332
Fsp4HI GCNGC 2 cut(s) 254, 332
FspBI CTAG 1 cut(s) 29
GluI GCNGC 2 cut(s) 254, 332
HaeIII GGCC 4 cut(s) 123, 151, 407, 438
HapII CCGG 1 cut(s) 408
Hin1II CATG 2 cut(s) 116, 264
HinfI GANTC 1 cut(s) 107
HpaII CCGG 1 cut(s) 408
HphI GGTGA 1 cut(s) 17
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 3 cut(s) 227, 293, 401
HpyAV CCTTC 2 cut(s) 81, 299
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 3 cut(s) 130, 164, 334
HpyF3I CTNAG 2 cut(s) 365, 402
Hsp92II CATG 2 cut(s) 116, 264
KroI GCCGGC 1 cut(s) 407
KroNI GCCGGC 1 cut(s) 409
Kzo9I GATC 3 cut(s) 223, 229, 418
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 369
LpnPI CCDG 6 cut(s) 183, 212, 327, 354, 414, 421
Lsp1109I GCAGC 2 cut(s) 265, 318
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 2 cut(s) 393, 425
MalI GATC 3 cut(s) 225, 231, 420
MboI GATC 3 cut(s) 223, 229, 418
MboII GAAGA 2 cut(s) 47, 91
MflI RGATCY 1 cut(s) 229
MlsI TGGCCA 2 cut(s) 123, 438
MluCI AATT 2 cut(s) 82, 445
MluNI TGGCCA 2 cut(s) 123, 438
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 25, 156
MnlI CCTC 5 cut(s) 87, 289, 304, 397, 408
Mox20I TGGCCA 2 cut(s) 123, 438
MroNI GCCGGC 1 cut(s) 407
MscI TGGCCA 2 cut(s) 123, 438
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 2 cut(s) 30, 117
Msp20I TGGCCA 2 cut(s) 123, 438
MspI CCGG 1 cut(s) 408
MspR9I CCNGG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 342
NaeI GCCGGC 1 cut(s) 409
NcoI CCATGG 1 cut(s) 260
NdeII GATC 3 cut(s) 223, 229, 418
NgoMIV GCCGGC 1 cut(s) 407
NlaIII CATG 2 cut(s) 116, 264
NlaIV GGNNCC 1 cut(s) 231
PaeR7I CTCGAG 1 cut(s) 291
PciSI GCTCTTC 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 409
PkrI GCNGC 2 cut(s) 255, 333
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PsiI TTATAA 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 231
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 2 cut(s) 20, 215
RsaNI GTAC 2 cut(s) 19, 214
RseI CAYNNNNRTG 2 cut(s) 30, 117
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 2 cut(s) 254, 332
Sau3AI GATC 3 cut(s) 223, 229, 418
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 342
SetI ASST 4 cut(s) 30, 98, 258, 400
SfaNI GCATC 1 cut(s) 139
Sfr274I CTCGAG 1 cut(s) 291
SlaI CTCGAG 1 cut(s) 291
SmiMI CAYNNNNRTG 2 cut(s) 30, 117
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 2 cut(s) 82, 445
SsiI CCGC 2 cut(s) 251, 411
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 1 cut(s) 218
TaqI TCGA 1 cut(s) 292
TasI AATT 2 cut(s) 82, 445
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseI GCWGC 2 cut(s) 253, 331
TspDTI ATGAA 2 cut(s) 48, 309
XapI RAATTY 2 cut(s) 82, 445
XhoI CTCGAG 1 cut(s) 291
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.