Rorug02G0577300

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000237
Physical Location & Seq
Forward (+)
70141786 .. 70142778
993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0577300.1

Sequence Viewer

Length: 993 bp
ATGTTCGATGTTAGTCATAACCAATTGCAGGGGAAATTACCAAGGTCACTGGAAAATTGTGCAGCACTTGAGTTTCTTGTTCTGTCAAACAATGAATTTAATGATGTTTTCCCTTTTTGGTTGGGAACTCTTCAGAAGTTAAAAATTTTGGCAATGCGCCATAATGGGTTCTATGGTGTGATAGGGATCAAACCTAAATCAGGAAATCTTCATTTCCCTGATTTGCGCATTCTTGATTTGTCTTACAATAGTTTCACTGGTGAGTTTCCAATTGAATACATCTTCTCTGGGTATGCCATCAGAGGTATCTCTCTCACACATGAGAATAGTTCTTATGATAGCTATCACTATTATTTACAATGTTCAATCACGATAACAAACAAGGGCATTGAGATATCCTATCCAAAGATTCAAGAGGACCTTGTAGTCATCCATATCTCTTGCAACAAATTTGAAGGGAATATTCCTGAATTCATTGGGAAACTGAAAGGGCTTCGCTTGCTGAATATTTCCAATAACTTTTTCACCGGTTGCATCCCATCATCATTGGGTAACTTGACACTACTCGAATCATTGGACCTTTCACAGAACAAGCTCTCAGGAGAGATTCCTCAGCAATTCACACAGCTTACATTCCTTGCAAAGCTCAATGTCTCGCACAATTATCTCACAGGTCACATACCGGGTGGAGCTCAACTCTCTACATTTGACATCTCTTCATATGAAGGAAATCCACGATTATGTGGGGATCCGTTGCCAAAGAAATGTGGAAATCCTGAGGGCTCTGAGCTTCCACCTTCAACATCAGAAGAAAATTACCTGGGATATGGAATTGAATTGGACTGGATATTTGCTTTGGCAGGTTTAGGGAGTGGGTTGGTGGTGGGAGTAGTACTATCAGACGTTGCGATCACAAAGTGGGATGGGTGGTTCATTGAGATTGTTGGAATATTGATCAGACTAGCGAAAAGGATGAGAAGGAGCAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

330

Amino Acids

36.82

Weight (kDa)

6.25

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 139 - 221 1.3e-08 Leucine-rich repeat region
LRR_8 PF13855 141 - 199 1.2e-07 Leucine rich repeat
LRR_8 PF13855 165 - 223 2.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 425
Acc16I TGCGCA 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 851
AclWI GGATC 3 cut(s) 194, 743, 756
AcsI RAATTY 4 cut(s) 95, 144, 449, 470
AcuI CTGAAG 1 cut(s) 116
AdeI CACNNNGTG 1 cut(s) 918
AfaI GTAC 1 cut(s) 894
AfiI CCNNNNNNNGG 2 cut(s) 28, 200
AgeI ACCGGT 1 cut(s) 527
AgsI TTSAA 6 cut(s) 275, 366, 413, 455, 801, 836
AjnI CCWGG 1 cut(s) 819
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AloI GAACNNNNNNTCC 2 cut(s) 914, 946
AluBI AGCT 6 cut(s) 342, 595, 628, 646, 692, 790
AluI AGCT 6 cut(s) 342, 595, 628, 646, 692, 790
Alw21I GWGCWC 1 cut(s) 694
Alw26I GTCTC 1 cut(s) 658
AlwI GGATC 3 cut(s) 194, 743, 756
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 4 cut(s) 95, 144, 449, 470
ArsI GACNNNNNNTTYG 2 cut(s) 833, 865
AsiGI ACCGGT 1 cut(s) 527
AspLEI GCGC 2 cut(s) 159, 228
AspS9I GGNCC 2 cut(s) 418, 577
AsuC2I CCSGG 1 cut(s) 684
AsuHPI GGTGA 2 cut(s) 272, 517
AvaII GGWCC 2 cut(s) 418, 577
AxyI CCTNAGG 1 cut(s) 777
BamHI GGATCC 1 cut(s) 748
BanII GRGCYC 2 cut(s) 694, 785
Bbv12I GWGCWC 1 cut(s) 694
BbvCI CCTCAGC 1 cut(s) 612
BbvI GCAGC 1 cut(s) 74
BccI CCATC 3 cut(s) 305, 547, 917
BciT130I CCWGG 1 cut(s) 821
BclI TGATCA 1 cut(s) 954
BcnI CCSGG 1 cut(s) 684
BcoDI GTCTC 1 cut(s) 658
BfaI CTAG 1 cut(s) 962
BfuAI ACCTGC 1 cut(s) 851
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmcAI AGTACT 1 cut(s) 894
Bme1390I CCNGG 2 cut(s) 684, 821
Bme18I GGWCC 2 cut(s) 418, 577
BmgT120I GGNCC 2 cut(s) 418, 577
BmiI GGNNCC 1 cut(s) 750
BmrFI CCNGG 2 cut(s) 684, 821
BmsI GCATC 1 cut(s) 543
BplI GAGNNNNNCTC 2 cut(s) 681, 713
Bpu10I CCTNAGC 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 684
BsaBI GATNNNNATC 2 cut(s) 185, 342
BsaJI CCNNGG 2 cut(s) 41, 820
BsaWI WCCGGW 1 cut(s) 527
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 200
Bse118I RCCGGY 1 cut(s) 527
Bse1I ACTGG 3 cut(s) 54, 262, 848
Bse21I CCTNAGG 1 cut(s) 777
Bse3DI GCAATG 1 cut(s) 159
Bse8I GATNNNNATC 2 cut(s) 185, 342
BseBI CCWGG 1 cut(s) 821
BseDI CCNNGG 2 cut(s) 41, 820
BseGI GGATG 4 cut(s) 429, 534, 928, 978
BseJI GATNNNNATC 2 cut(s) 185, 342
BseLI CCNNNNNNNGG 2 cut(s) 28, 200
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 4 cut(s) 612, 626, 768, 777
BseNI ACTGG 3 cut(s) 54, 262, 848
BseXI GCAGC 1 cut(s) 74
BsgI GTGCAG 1 cut(s) 81
BshTI ACCGGT 1 cut(s) 527
BsiHKAI GWGCWC 1 cut(s) 694
BsiSI CCGG 2 cut(s) 528, 683
BslI CCNNNNNNNGG 2 cut(s) 28, 200
BsmAI GTCTC 1 cut(s) 658
BsmI GAATGC 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 694, 785
Bsp143I GATC 4 cut(s) 186, 748, 909, 954
BspCNI CTCAG 4 cut(s) 611, 625, 769, 778
BspLI GGNNCC 1 cut(s) 750
BspMI ACCTGC 1 cut(s) 851
BspPI GGATC 3 cut(s) 194, 743, 756
BsrDI GCAATG 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 527
BsrI ACTGG 3 cut(s) 54, 262, 848
BssAI RCCGGY 1 cut(s) 527
BssECI CCNNGG 2 cut(s) 41, 820
BssMI GATC 4 cut(s) 186, 748, 909, 954
BssT1I CCWWGG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 821
Bst6I CTCTTC 2 cut(s) 135, 721
BstC8I GCNNGC 1 cut(s) 500
BstDEI CTNAG 4 cut(s) 598, 612, 777, 786
BstENI CCTNNNNNAGG 1 cut(s) 198
BstF5I GGATG 4 cut(s) 429, 534, 928, 978
BstHHI GCGC 2 cut(s) 159, 228
BstKTI GATC 4 cut(s) 189, 751, 912, 957
BstMAI GTCTC 1 cut(s) 658
BstMBI GATC 4 cut(s) 186, 748, 909, 954
BstMWI GCNNNNNNNGC 1 cut(s) 499
BstNI CCWGG 1 cut(s) 821
BstSCI CCNGG 2 cut(s) 682, 819
BstV1I GCAGC 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 748
BstYI RGATCY 1 cut(s) 748
Bsu36I CCTNAGG 1 cut(s) 777
BtsCI GGATG 4 cut(s) 429, 534, 928, 978
BtsIMutI CAGTG 2 cut(s) 47, 255
BveI ACCTGC 1 cut(s) 851
Cac8I GCNNGC 1 cut(s) 500
CfoI GCGC 2 cut(s) 159, 228
Cfr10I RCCGGY 1 cut(s) 527
Cfr13I GGNCC 2 cut(s) 418, 577
Csp6I GTAC 1 cut(s) 893
CspAI ACCGGT 1 cut(s) 527
CviAII CATG 1 cut(s) 320
CviJI RGCY 8 cut(s) 342, 493, 595, 628, 646, 692, 783, 790
CviKI_1 RGCY 8 cut(s) 342, 493, 595, 628, 646, 692, 783, 790
CviQI GTAC 1 cut(s) 893
DdeI CTNAG 4 cut(s) 598, 612, 777, 786
DpnI GATC 4 cut(s) 188, 750, 911, 956
DpnII GATC 4 cut(s) 186, 748, 909, 954
DraIII CACNNNGTG 1 cut(s) 918
DrdI GACNNNNNNGTC 1 cut(s) 425
DseDI GACNNNNNNGTC 1 cut(s) 425
Eam1104I CTCTTC 2 cut(s) 135, 721
EarI CTCTTC 2 cut(s) 135, 721
Ecl136II GAGCTC 1 cut(s) 692
Eco130I CCWWGG 1 cut(s) 41
Eco24I GRGCYC 2 cut(s) 694, 785
Eco32I GATATC 1 cut(s) 396
Eco47I GGWCC 2 cut(s) 418, 577
Eco53kI GAGCTC 1 cut(s) 692
Eco57I CTGAAG 1 cut(s) 116
Eco81I CCTNAGG 1 cut(s) 777
EcoICRI GAGCTC 1 cut(s) 692
EcoNI CCTNNNNNAGG 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 418
EcoRI GAATTC 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 819
EcoRV GATATC 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 41
EcoT38I GRGCYC 2 cut(s) 694, 785
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 1 cut(s) 323
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FatI CATG 1 cut(s) 319
FauNDI CATATG 1 cut(s) 721
FbaI TGATCA 1 cut(s) 954
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 4 cut(s) 416, 521, 935, 985
FriOI GRGCYC 2 cut(s) 694, 785
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 962
FspI TGCGCA 1 cut(s) 227
GlaI GCGC 2 cut(s) 158, 227
GluI GCNGC 1 cut(s) 63
HapII CCGG 2 cut(s) 528, 683
HhaI GCGC 2 cut(s) 159, 228
Hin1II CATG 1 cut(s) 323
Hin6I GCGC 2 cut(s) 157, 226
HinP1I GCGC 2 cut(s) 157, 226
HinfI GANTC 3 cut(s) 409, 569, 607
HpaII CCGG 2 cut(s) 528, 683
HphI GGTGA 2 cut(s) 272, 517
Hpy188I TCNGA 6 cut(s) 135, 302, 787, 808, 901, 959
Hpy188III TCNNGA 7 cut(s) 201, 233, 370, 413, 467, 600, 776
HpyAV CCTTC 4 cut(s) 449, 719, 807, 972
HpyCH4IV ACGT 1 cut(s) 903
HpyCH4V TGCA 5 cut(s) 28, 62, 444, 534, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 499
HpyF3I CTNAG 4 cut(s) 598, 612, 777, 786
HpySE526I ACGT 1 cut(s) 903
Hsp92II CATG 1 cut(s) 323
HspAI GCGC 2 cut(s) 157, 226
Ksp22I TGATCA 1 cut(s) 954
Kzo9I GATC 4 cut(s) 186, 748, 909, 954
LmnI GCTCC 2 cut(s) 689, 981
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 543
MaeI CTAG 1 cut(s) 962
MaeII ACGT 1 cut(s) 903
MaeIII GTNAC 3 cut(s) 45, 551, 674
MalI GATC 4 cut(s) 188, 750, 911, 956
MboI GATC 4 cut(s) 186, 748, 909, 954
MboII GAAGA 5 cut(s) 122, 200, 274, 708, 821
MfeI CAATTG 2 cut(s) 23, 270
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 2 cut(s) 694, 785
MmeI TCCRAC 1 cut(s) 925
MnlI CCTC 4 cut(s) 296, 409, 621, 772
MseI TTAA 2 cut(s) 99, 140
MslI CAYNNNNRTG 1 cut(s) 739
MspI CCGG 2 cut(s) 528, 683
MspR9I CCNGG 2 cut(s) 684, 821
MunI CAATTG 2 cut(s) 23, 270
Mva1269I GAATGC 1 cut(s) 228
MvaI CCWGG 1 cut(s) 821
MwoI GCNNNNNNNGC 1 cut(s) 499
NciI CCSGG 1 cut(s) 684
NdeI CATATG 1 cut(s) 721
NdeII GATC 4 cut(s) 186, 748, 909, 954
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 1 cut(s) 750
NmuCI GTSAC 2 cut(s) 45, 674
NsbI TGCGCA 1 cut(s) 227
PctI GAATGC 1 cut(s) 228
PfeI GAWTC 3 cut(s) 409, 569, 607
PinAI ACCGGT 1 cut(s) 527
PkrI GCNGC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 418
Psp124BI GAGCTC 1 cut(s) 694
Psp5II RGGWCCY 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 819
PspGI CCWGG 1 cut(s) 819
PspN4I GGNNCC 1 cut(s) 750
PspPI GGNCC 2 cut(s) 418, 577
PspPPI RGGWCCY 1 cut(s) 418
PsuI RGATCY 1 cut(s) 748
RsaI GTAC 1 cut(s) 894
RsaNI GTAC 1 cut(s) 893
RseI CAYNNNNRTG 1 cut(s) 739
SacI GAGCTC 1 cut(s) 694
SaqAI TTAA 2 cut(s) 99, 140
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 4 cut(s) 186, 748, 909, 954
Sau96I GGNCC 2 cut(s) 418, 577
ScaI AGTACT 1 cut(s) 894
ScrFI CCNGG 2 cut(s) 684, 821
SduI GDGCHC 2 cut(s) 694, 785
SfaNI GCATC 1 cut(s) 543
SinI GGWCC 2 cut(s) 418, 577
SmiMI CAYNNNNRTG 1 cut(s) 739
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SspI AATATT 3 cut(s) 463, 508, 951
SspMI CTAG 1 cut(s) 962
SstI GAGCTC 1 cut(s) 694
StyD4I CCNGG 2 cut(s) 682, 819
StyI CCWWGG 1 cut(s) 41
TaiI ACGT 1 cut(s) 906
TaqI TCGA 2 cut(s) 6, 567
TatI WGTACW 1 cut(s) 892
TfiI GAWTC 3 cut(s) 409, 569, 607
Tru1I TTAA 2 cut(s) 99, 140
Tru9I TTAA 2 cut(s) 99, 140
TscAI CASTG 2 cut(s) 54, 262
TseFI GTSAC 2 cut(s) 45, 674
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 2 cut(s) 45, 674
TspDTI ATGAA 6 cut(s) 108, 200, 463, 708, 738, 922
TspGWI ACGGA 1 cut(s) 741
TspRI CASTG 2 cut(s) 54, 262
VpaK11BI GGWCC 2 cut(s) 418, 577
XagI CCTNNNNNAGG 1 cut(s) 198
XapI RAATTY 4 cut(s) 95, 144, 449, 470
XspI CTAG 1 cut(s) 962
ZrmI AGTACT 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.